Wall clock time and date at job start Fri Apr 10 2020 18:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86806 * 120.00194 * 2 1 4 4 H 1.48496 * 109.47183 * 240.00392 * 3 2 1 5 5 H 1.48507 * 109.46976 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47203 * 119.99775 * 3 2 1 7 7 C 1.40028 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00313 * 180.02562 * 7 2 1 9 9 C 1.41339 * 119.99762 * 359.97438 * 7 2 1 10 10 C 1.40631 * 119.78422 * 180.02562 * 9 7 2 11 11 C 1.38303 * 119.13151 * 179.97438 * 10 9 7 12 12 C 1.38687 * 118.67428 * 359.75654 * 11 10 9 13 13 C 1.39663 * 119.49365 * 0.49348 * 12 11 10 14 14 N 1.39118 * 119.58258 * 179.77157 * 13 12 11 15 15 C 1.34771 * 120.00450 * 185.38599 * 14 13 12 16 16 O 1.21357 * 119.99839 * 354.86450 * 15 14 13 17 17 C 1.49366 * 120.00186 * 174.85112 * 15 14 13 18 18 O 1.21359 * 119.99833 * 0.02562 * 17 15 14 19 19 N 1.34781 * 120.00317 * 180.02562 * 17 15 14 20 20 C 1.47019 * 125.64444 * 0.03108 * 19 17 15 21 21 C 1.54319 * 107.27057 * 178.91430 * 20 19 17 22 22 C 1.55270 * 103.01020 * 337.88909 * 21 20 19 23 23 H 1.09005 * 110.95566 * 277.33535 * 22 21 20 24 24 C 1.53003 * 111.10457 * 153.44684 * 22 21 20 25 25 F 1.39902 * 109.47218 * 71.35868 * 24 22 21 26 26 C 1.47420 * 125.65190 * 180.02562 * 19 17 15 27 27 N 1.31960 * 120.84352 * 359.49083 * 13 12 11 28 28 H 0.97007 * 120.00029 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.43513 * 359.96167 * 10 9 7 30 30 H 1.08010 * 120.66267 * 180.02562 * 11 10 9 31 31 H 1.07997 * 120.25815 * 180.24211 * 12 11 10 32 32 H 0.97001 * 119.99407 * 5.39040 * 14 13 12 33 33 H 1.09005 * 109.88444 * 298.33462 * 20 19 17 34 34 H 1.09006 * 109.88520 * 59.50215 * 20 19 17 35 35 H 1.09005 * 110.72189 * 96.17279 * 21 20 19 36 36 H 1.08997 * 110.72484 * 219.26403 * 21 20 19 37 37 H 1.09005 * 109.47202 * 191.35960 * 24 22 21 38 38 H 1.09001 * 109.46616 * 311.35652 * 24 22 21 39 39 H 1.08999 * 110.36524 * 322.98802 * 26 19 17 40 40 H 1.08999 * 110.36929 * 85.19880 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0001 9 6 1.3008 -2.4367 -0.0005 10 6 2.0085 -3.6519 -0.0005 11 6 1.3034 -4.8417 0.0000 12 6 -0.0826 -4.7938 0.0057 13 6 -0.7279 -3.5552 0.0002 14 7 -2.1181 -3.5050 0.0011 15 6 -2.7498 -2.3200 -0.1137 16 8 -2.1092 -1.2894 -0.1239 17 6 -4.2384 -2.2752 -0.2285 18 8 -4.8791 -3.3059 -0.2180 19 7 -4.8701 -1.0902 -0.3438 20 6 -4.2201 0.2282 -0.3706 21 6 -5.3323 1.2840 -0.5426 22 6 -6.4952 0.4678 -1.1691 23 1 -6.3668 0.3707 -2.2472 24 6 -7.8505 1.0941 -0.8347 25 9 -8.0020 2.2872 -1.5493 26 6 -6.3272 -0.9014 -0.4639 27 7 -0.0356 -2.4317 -0.0002 28 1 -0.4850 0.8401 -0.0004 29 1 3.0885 -3.6561 -0.0012 30 1 1.8218 -5.7893 0.0004 31 1 -0.6587 -5.7073 0.0102 32 1 -2.6328 -4.3230 0.0844 33 1 -3.6886 0.3986 0.5657 34 1 -3.5252 0.2819 -1.2088 35 1 -5.6278 1.6938 0.4233 36 1 -5.0089 2.0790 -1.2144 37 1 -8.6477 0.4029 -1.1085 38 1 -7.9009 1.3017 0.2342 39 1 -6.7640 -1.6958 -1.0691 40 1 -6.7896 -0.8794 0.5229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891032508.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:23 Heat of formation + Delta-G solvation = -54.339053 kcal Electronic energy + Delta-G solvation = -27025.352459 eV Core-core repulsion = 22948.619720 eV Total energy + Delta-G solvation = -4076.732738 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.128 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.88040 -40.44447 -38.95498 -37.69949 -37.12763 -34.36075 -33.17909 -32.48007 -30.40073 -29.71282 -29.23772 -26.85209 -25.69155 -24.27525 -22.77830 -21.60444 -20.96508 -20.63064 -19.18466 -18.03584 -17.17138 -16.86120 -16.35470 -16.07555 -15.96371 -15.89276 -15.05701 -14.74770 -14.50637 -14.38410 -14.04438 -13.73645 -13.61682 -13.58360 -12.96585 -12.83166 -12.73876 -12.26637 -12.03668 -12.00337 -11.75561 -11.26582 -11.19849 -11.12757 -11.03336 -10.91574 -10.72881 -10.71289 -10.53407 -10.01416 -9.80893 -9.10753 -8.96222 -8.71814 -8.05148 -7.34805 -7.07576 -6.24136 -4.47189 1.88828 2.58096 2.80952 3.06824 3.10814 3.13754 3.22581 3.81355 3.91969 3.99949 4.05349 4.24621 4.32209 4.67210 4.78377 4.84644 4.94666 5.01632 5.13547 5.22154 5.35022 5.46453 5.68798 5.80349 5.95007 5.95883 6.04936 6.07452 6.23916 6.41687 6.56098 6.73623 6.77790 7.13639 7.27283 7.43460 7.50647 7.74473 7.80267 8.00341 8.13428 8.34764 8.61151 8.91462 8.99816 10.12475 10.39194 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.013109 B = 0.004098 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.484610 B = 6830.814597 C = 8883.043442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.663 5.663 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.424 4.424 8 H 0.083 0.917 9 C 0.272 3.728 10 C -0.300 4.300 11 C -0.036 4.036 12 C -0.349 4.349 13 C 0.369 3.631 14 N -0.639 5.639 15 C 0.468 3.532 16 O -0.380 6.380 17 C 0.523 3.477 18 O -0.536 6.536 19 N -0.595 5.595 20 C 0.108 3.892 21 C -0.129 4.129 22 C -0.139 4.139 23 H 0.098 0.902 24 C 0.075 3.925 25 F -0.215 7.215 26 C 0.114 3.886 27 N -0.475 5.475 28 H 0.272 0.728 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.411 0.589 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.407 3.117 -0.519 13.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.282 5.282 2 C -0.168 4.168 3 Si 0.722 3.278 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.455 4.455 8 H 0.101 0.899 9 C 0.147 3.853 10 C -0.323 4.323 11 C -0.060 4.060 12 C -0.375 4.375 13 C 0.131 3.869 14 N -0.287 5.287 15 C 0.244 3.756 16 O -0.243 6.243 17 C 0.307 3.693 18 O -0.413 6.413 19 N -0.330 5.330 20 C -0.014 4.014 21 C -0.167 4.167 22 C -0.159 4.159 23 H 0.117 0.883 24 C 0.020 3.980 25 F -0.196 7.196 26 C -0.009 4.009 27 N -0.194 5.194 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.246 0.754 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.878 4.318 -0.543 14.544 hybrid contribution 0.525 -0.570 -0.001 0.775 sum -13.353 3.748 -0.544 13.880 Atomic orbital electron populations 1.70301 1.05905 1.27376 1.24573 1.26142 0.95128 1.00591 0.94933 0.86559 0.80247 0.81290 0.79733 1.19157 1.20348 1.19153 1.19554 0.94107 0.89327 1.42473 0.89912 1.18354 0.86968 0.92026 0.87965 1.21657 0.98677 0.93479 1.18535 1.20584 0.93068 0.96682 0.95684 1.20509 0.94830 0.94950 1.27173 1.18526 0.82577 0.91241 0.94534 1.42977 1.05291 1.09115 1.71360 1.19981 0.86998 0.86100 0.82489 1.91197 1.64461 1.30483 1.38137 1.20606 0.89554 0.82238 0.76914 1.90699 1.68267 1.32414 1.49904 1.48175 1.07237 1.06524 1.71063 1.22233 0.94771 0.79778 1.04640 1.22835 0.94377 0.97772 1.01691 1.23042 0.95217 0.95441 1.02168 0.88339 1.21861 0.97117 0.82791 0.96235 1.92780 1.96818 1.49204 1.80812 1.22125 0.81658 0.96407 1.00661 1.68636 1.07268 1.23131 1.20385 0.91679 0.88382 0.88364 0.88735 0.75351 0.89656 0.89611 0.90380 0.89391 0.90351 0.90291 0.89785 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.12 8.99 55.55 0.50 -16.62 16 2 C 0.06 1.52 5.50 -17.35 -0.10 1.43 16 3 Si 0.90 18.40 29.56 -169.99 -5.02 13.38 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.42 -11.25 9.14 -37.73 -0.34 -11.60 16 8 H 0.08 2.06 7.85 -52.49 -0.41 1.64 16 9 C 0.27 7.42 6.55 -85.00 -0.56 6.87 16 10 C -0.30 -7.38 9.83 -38.65 -0.38 -7.76 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.35 -7.82 9.95 -38.88 -0.39 -8.21 16 13 C 0.37 8.96 7.42 -155.08 -1.15 7.81 16 14 N -0.64 -13.28 5.37 -11.84 -0.06 -13.35 16 15 C 0.47 9.64 7.81 -11.63 -0.09 9.55 16 16 O -0.38 -8.77 9.89 5.49 0.05 -8.71 16 17 C 0.52 9.18 7.91 -11.62 -0.09 9.09 16 18 O -0.54 -9.92 16.74 5.49 0.09 -9.83 16 19 N -0.59 -8.53 3.33 -171.05 -0.57 -9.10 16 20 C 0.11 1.45 5.49 -3.07 -0.02 1.43 16 21 C -0.13 -1.24 6.41 -24.84 -0.16 -1.40 16 22 C -0.14 -1.21 3.38 -88.40 -0.30 -1.51 16 23 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 24 C 0.08 0.52 6.98 37.16 0.26 0.78 16 25 F -0.22 -2.11 17.34 2.25 0.04 -2.07 16 26 C 0.11 1.19 6.37 -2.52 -0.02 1.17 16 27 N -0.47 -12.93 5.73 -10.28 -0.06 -12.99 16 28 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 29 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 30 H 0.10 1.86 8.06 -52.48 -0.42 1.43 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.41 7.36 8.18 -40.82 -0.33 7.02 16 33 H 0.09 1.27 7.69 -51.93 -0.40 0.87 16 34 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 35 H 0.08 0.66 7.94 -51.93 -0.41 0.25 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.44 8.01 -51.93 -0.42 0.02 16 39 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 40 H 0.07 0.67 8.03 -51.93 -0.42 0.25 16 LS Contribution 341.39 15.07 5.14 5.14 Total: -1.00 -31.37 341.39 -8.49 -39.86 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.87 Total: 7.84 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -3.73 Total: 6.45 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.19 Total: -52.06 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.15 Total: -18.54 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.37 -8.49 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891032508.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.478 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds