Wall clock time and date at job start Fri Apr 10 2020 18:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 H 1.09002 * 109.54407 * 30.17632 * 3 2 1 5 5 C 1.53182 * 109.54182 * 270.00082 * 3 2 1 6 6 C 1.53088 * 109.16213 * 183.15017 * 5 3 2 7 7 O 1.42901 * 109.41591 * 57.60769 * 6 5 3 8 8 C 1.42910 * 114.09730 * 298.84384 * 7 6 5 9 9 C 1.53086 * 109.41475 * 61.15744 * 8 7 6 10 10 H 1.09000 * 109.52447 * 62.29832 * 9 8 7 11 11 N 1.46499 * 109.52123 * 182.48757 * 9 8 7 12 12 S 1.65604 * 119.99866 * 264.99797 * 11 9 8 13 13 O 1.42098 * 104.27634 * 181.06747 * 12 11 9 14 14 O 1.42095 * 104.27564 * 308.92707 * 12 11 9 15 15 C 1.81407 * 104.44983 * 64.99905 * 12 11 9 16 16 C 1.52995 * 109.46931 * 179.97438 * 15 12 11 17 17 C 1.53002 * 109.47381 * 299.99808 * 16 15 12 18 18 C 1.53002 * 109.47246 * 60.00195 * 16 15 12 19 19 C 1.50700 * 109.47008 * 179.97438 * 16 15 12 20 20 H 1.08007 * 119.99979 * 357.70233 * 19 16 15 21 21 C 1.37877 * 120.00215 * 177.69135 * 19 16 15 22 22 N 1.31515 * 119.99937 * 6.59164 * 21 19 16 23 23 Si 1.86794 * 120.00154 * 186.58149 * 21 19 16 24 24 H 1.48508 * 109.47136 * 85.00184 * 23 21 19 25 25 H 1.48500 * 109.47527 * 204.99644 * 23 21 19 26 26 H 1.48495 * 109.47761 * 325.00257 * 23 21 19 27 27 H 1.09000 * 109.46923 * 300.00054 * 1 2 3 28 28 H 1.08992 * 109.47082 * 59.99984 * 1 2 3 29 29 H 1.08993 * 109.46944 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.52093 * 63.24623 * 5 3 2 31 31 H 1.08999 * 109.51951 * 303.05624 * 5 3 2 32 32 H 1.09003 * 109.47970 * 297.62647 * 6 5 3 33 33 H 1.08996 * 109.48369 * 177.59180 * 6 5 3 34 34 H 1.09005 * 109.47576 * 181.13853 * 8 7 6 35 35 H 1.08997 * 109.47600 * 301.16661 * 8 7 6 36 36 H 0.96996 * 120.00581 * 84.99628 * 11 9 8 37 37 H 1.09000 * 109.47061 * 300.00062 * 15 12 11 38 38 H 1.08999 * 109.46668 * 59.99816 * 15 12 11 39 39 H 1.08997 * 109.46881 * 66.67418 * 17 16 15 40 40 H 1.08997 * 109.46735 * 186.66713 * 17 16 15 41 41 H 1.08996 * 109.47268 * 306.67223 * 17 16 15 42 42 H 1.09000 * 109.47090 * 59.99593 * 18 16 15 43 43 H 1.08998 * 109.47455 * 179.97438 * 18 16 15 44 44 H 1.09001 * 109.47062 * 300.00037 * 18 16 15 45 45 H 0.96999 * 120.00037 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3474 1.9998 0.5163 5 6 2.2187 1.7735 -1.4436 6 6 2.9131 3.1378 -1.4342 7 8 4.1525 3.0351 -0.7303 8 6 4.0159 2.6468 0.6382 9 6 3.3658 1.2628 0.7120 10 1 4.0103 0.5312 0.2249 11 7 3.1704 0.8879 2.1147 12 16 4.3030 -0.0391 2.8895 13 8 3.7746 -0.2184 4.1963 14 8 4.5025 -1.1465 2.0216 15 6 5.7853 1.0054 2.9400 16 6 6.9168 0.2513 3.6413 17 6 6.4896 -0.0972 5.0686 18 6 7.2254 -1.0352 2.8728 19 6 8.1484 1.1187 3.6827 20 1 8.1377 2.0943 3.2193 21 6 9.2888 0.6672 4.3124 22 7 9.3464 -0.5671 4.7629 23 14 10.7522 1.8084 4.5255 24 1 10.5692 2.6243 5.7527 25 1 11.9942 1.0034 4.6471 26 1 10.8569 2.7048 3.3463 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.2529 1.8599 -1.9415 31 1 2.8400 1.0522 -1.9743 32 1 2.2732 3.8680 -0.9388 33 1 3.1025 3.4564 -2.4592 34 1 4.9999 2.6117 1.1060 35 1 3.3905 3.3707 1.1607 36 1 2.3777 1.1827 2.5896 37 1 6.0894 1.2540 1.9232 38 1 5.5655 1.9217 3.4878 39 1 5.6731 -0.8186 5.0375 40 1 7.3346 -0.5278 5.6057 41 1 6.1568 0.8065 5.5791 42 1 7.5297 -0.7869 1.8560 43 1 8.0318 -1.5722 3.3722 44 1 6.3347 -1.6628 2.8424 45 1 10.1488 -0.8849 5.2056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907840663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:28 Heat of formation + Delta-G solvation = -190.275609 kcal Electronic energy + Delta-G solvation = -27468.208504 eV Core-core repulsion = 23612.192619 eV Total energy + Delta-G solvation = -3856.015884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89316 -38.37831 -38.12580 -38.10889 -36.90736 -36.13281 -33.63814 -32.95820 -30.25666 -28.44582 -27.72704 -27.69213 -27.22839 -25.13810 -24.27637 -21.82383 -21.33843 -20.25536 -18.92751 -18.19828 -17.83049 -17.57132 -17.25508 -16.83049 -16.75086 -16.59586 -16.18860 -15.93930 -15.52649 -14.98760 -14.78050 -14.69365 -14.44861 -14.28254 -14.14434 -13.78351 -13.41612 -13.19168 -13.05440 -12.92165 -12.83885 -12.78830 -12.70999 -12.49827 -12.25857 -12.17976 -12.13320 -11.96658 -11.86414 -11.65608 -11.56307 -11.40954 -11.04754 -10.63922 -10.54891 -10.37716 -10.20084 -8.01907 -6.19778 -0.64318 1.46301 1.47861 1.55931 1.80380 2.45996 2.64966 2.83658 2.95790 3.20235 3.31412 3.53173 3.75150 3.80501 3.95461 3.99540 4.11213 4.18682 4.32968 4.37314 4.45173 4.52979 4.56488 4.57875 4.69437 4.79128 4.83775 4.86170 4.87196 4.88643 4.97590 5.03712 5.09054 5.20317 5.38920 5.49541 5.66310 5.97365 6.04348 6.12205 6.19551 6.25609 6.35410 6.84760 7.48237 8.98023 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.004187 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.393719 B = 6685.764829 C = 7679.466684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.404 6.404 3 C 0.084 3.916 4 H 0.095 0.905 5 C -0.173 4.173 6 C 0.054 3.946 7 O -0.393 6.393 8 C 0.039 3.961 9 C 0.111 3.889 10 H 0.083 0.917 11 N -1.097 6.097 12 S 2.610 3.390 13 O -0.990 6.990 14 O -0.991 6.991 15 C -0.587 4.587 16 C 0.070 3.930 17 C -0.157 4.157 18 C -0.160 4.160 19 C -0.515 4.515 20 H 0.066 0.934 21 C 0.018 3.982 22 N -0.908 5.908 23 Si 0.954 3.046 24 H -0.276 1.276 25 H -0.289 1.289 26 H -0.267 1.267 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.425 0.575 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.026 0.974 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.029 0.971 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.037 9.657 -11.349 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.323 6.323 3 C 0.025 3.975 4 H 0.113 0.887 5 C -0.212 4.212 6 C -0.022 4.022 7 O -0.310 6.310 8 C -0.039 4.039 9 C 0.003 3.997 10 H 0.102 0.898 11 N -0.858 5.858 12 S 2.707 3.293 13 O -0.980 6.980 14 O -0.981 6.981 15 C -0.720 4.720 16 C 0.068 3.932 17 C -0.215 4.215 18 C -0.218 4.218 19 C -0.554 4.554 20 H 0.084 0.916 21 C -0.182 4.182 22 N -0.546 5.546 23 Si 0.780 3.220 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.192 1.192 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.134 0.866 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.261 0.739 37 H 0.153 0.847 38 H 0.164 0.836 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.047 0.953 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.654 8.446 -11.135 22.517 hybrid contribution 0.582 0.736 0.499 1.063 sum -17.072 9.182 -10.636 22.111 Atomic orbital electron populations 1.23020 0.79538 1.03663 1.01298 1.88026 1.21432 1.27750 1.95118 1.22510 0.93178 0.85707 0.96147 0.88691 1.22772 1.03478 0.98733 0.96226 1.22874 0.85200 0.95317 0.98831 1.88006 1.31467 1.88610 1.22948 1.23343 1.03037 0.93511 0.84034 1.21753 0.98616 0.98440 0.80916 0.89845 1.55217 1.37524 1.72984 1.20065 1.04855 0.76108 0.75580 0.72722 1.93511 1.78413 1.85861 1.40262 1.93513 1.86465 1.50751 1.67393 1.30594 1.15919 1.14805 1.10642 1.17917 0.91770 0.92461 0.91039 1.22142 0.99972 0.99685 0.99680 1.22246 1.01310 0.98790 0.99484 1.21275 0.96103 1.02280 1.35780 0.91593 1.25675 1.00932 0.96178 0.95370 1.69958 1.29002 1.16129 1.39539 0.85633 0.78704 0.78959 0.78699 1.20154 1.21527 1.19188 0.92850 0.92054 0.89464 0.87731 0.91379 0.90540 0.86574 0.88004 0.89200 0.73933 0.84660 0.83630 0.95515 0.91128 0.93585 0.94335 0.90819 0.95258 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.40 -9.47 10.28 -148.98 -1.53 -11.01 16 3 C 0.08 1.56 2.25 30.71 0.07 1.63 16 4 H 0.10 1.22 7.79 -2.39 -0.02 1.20 16 5 C -0.17 -2.56 5.76 30.68 0.18 -2.39 16 6 C 0.05 0.72 6.84 72.01 0.49 1.21 16 7 O -0.39 -8.27 10.77 -148.98 -1.60 -9.87 16 8 C 0.04 0.80 6.40 72.01 0.46 1.26 16 9 C 0.11 2.65 2.57 45.08 0.12 2.77 16 10 H 0.08 2.46 7.49 -2.39 -0.02 2.44 16 11 N -1.10 -28.51 5.29 -169.03 -0.89 -29.41 16 12 S 2.61 96.65 4.47 -56.49 -0.25 96.40 16 13 O -0.99 -41.35 15.84 -127.65 -2.02 -43.37 16 14 O -0.99 -43.75 15.02 -127.65 -1.92 -45.67 16 15 C -0.59 -21.95 4.22 71.98 0.30 -21.65 16 16 C 0.07 3.39 0.52 -52.93 -0.03 3.36 16 17 C -0.16 -7.79 7.58 71.98 0.55 -7.24 16 18 C -0.16 -8.16 7.79 71.98 0.56 -7.60 16 19 C -0.52 -26.63 8.01 25.60 0.20 -26.42 16 20 H 0.07 3.24 7.75 -2.91 -0.02 3.22 16 21 C 0.02 0.94 5.09 84.65 0.43 1.38 16 22 N -0.91 -50.48 9.39 21.45 0.20 -50.28 16 23 Si 0.95 42.06 29.54 68.60 2.03 44.08 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H 0.05 0.65 8.09 -2.39 -0.02 0.63 16 28 H 0.06 0.63 7.96 -2.39 -0.02 0.61 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.10 1.01 7.96 -2.39 -0.02 0.99 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 2.23 5.84 -2.38 -0.01 2.21 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.42 8.68 8.80 -96.75 -0.85 7.83 16 37 H 0.14 4.57 6.73 -2.39 -0.02 4.55 16 38 H 0.15 4.63 8.14 -2.39 -0.02 4.61 16 39 H 0.03 1.28 5.96 -2.39 -0.01 1.26 16 40 H 0.07 3.83 5.99 -2.39 -0.01 3.81 16 41 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 4.08 6.01 -2.39 -0.01 4.07 16 44 H 0.03 1.43 5.47 -2.39 -0.01 1.42 16 45 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -72.36 355.04 -1.29 -73.65 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.14 Total: 27.62 kcal Atomic # 6 Polarization: -56.72 SS G_CDS: 4.56 Total: -52.16 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -0.69 Total: -79.69 kcal Atomic # 8 Polarization: -102.84 SS G_CDS: -7.07 Total: -109.91 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 96.65 SS G_CDS: -0.25 Total: 96.40 kcal Total: -72.36 -1.29 -73.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907840663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.623 kcal (2) G-P(sol) polarization free energy of solvation -72.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds