Wall clock time and date at job start Fri Apr 10 2020 18:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46940 * 2 1 4 4 C 1.50703 * 109.47134 * 240.00295 * 2 1 3 5 5 H 1.07999 * 119.99913 * 239.99492 * 4 2 1 6 6 C 1.37884 * 119.99673 * 60.00096 * 4 2 1 7 7 N 1.31508 * 120.00096 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99428 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47139 * 60.00074 * 8 6 4 10 10 H 1.48502 * 109.46838 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47433 * 299.99570 * 8 6 4 12 12 C 1.52997 * 109.47126 * 120.00528 * 2 1 3 13 13 S 1.81404 * 109.47119 * 299.99856 * 12 2 1 14 14 O 1.42103 * 110.53861 * 68.37538 * 13 12 2 15 15 O 1.42102 * 110.54387 * 291.62964 * 13 12 2 16 16 N 1.65592 * 104.44956 * 180.02562 * 13 12 2 17 17 C 1.46497 * 120.00275 * 65.00139 * 16 13 12 18 18 C 1.53004 * 109.47054 * 164.99867 * 17 16 13 19 19 O 1.42891 * 109.47229 * 65.00092 * 18 17 16 20 20 C 1.42902 * 114.00371 * 179.97438 * 19 18 17 21 21 H 1.08999 * 110.79649 * 26.37608 * 20 19 18 22 22 C 1.54807 * 110.90592 * 149.99788 * 20 19 18 23 23 C 1.54105 * 104.18504 * 139.12065 * 22 20 19 24 24 O 1.43746 * 107.42259 * 1.95340 * 23 22 20 25 25 C 1.44586 * 106.86832 * 333.67423 * 24 23 22 26 26 H 1.08996 * 109.47168 * 299.99499 * 1 2 3 27 27 H 1.08998 * 109.47335 * 60.00013 * 1 2 3 28 28 H 1.09008 * 109.47068 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46959 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47096 * 300.00133 * 3 2 1 31 31 H 1.09004 * 109.46479 * 60.00387 * 3 2 1 32 32 H 0.97005 * 119.99927 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46943 * 180.02562 * 12 2 1 34 34 H 1.08998 * 109.47322 * 59.99863 * 12 2 1 35 35 H 0.97008 * 119.99729 * 244.99564 * 16 13 12 36 36 H 1.09001 * 109.47359 * 45.00082 * 17 16 13 37 37 H 1.09000 * 109.47467 * 285.00180 * 17 16 13 38 38 H 1.08994 * 109.47237 * 304.99504 * 18 17 16 39 39 H 1.09000 * 109.46840 * 184.99978 * 18 17 16 40 40 H 1.08996 * 110.48875 * 20.44334 * 22 20 19 41 41 H 1.09003 * 110.60294 * 257.84825 * 22 20 19 42 42 H 1.09002 * 109.88076 * 121.45430 * 23 22 20 43 43 H 1.08996 * 109.87584 * 242.45546 * 23 22 20 44 44 H 1.08999 * 110.50225 * 281.37988 * 25 24 23 45 45 H 1.08994 * 110.77338 * 158.50734 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3225 -1.1193 -4.0080 9 1 1.8281 -2.5196 -4.0083 10 1 1.8269 -0.4196 -5.2205 11 1 3.8076 -1.1187 -4.0079 12 6 2.0400 -0.7213 1.2491 13 16 1.4354 0.1337 2.7304 14 8 0.0279 -0.0186 2.8543 15 8 2.0479 1.4099 2.8545 16 7 2.0541 -0.7403 3.9935 17 6 3.5026 -0.7966 4.2053 18 6 3.7923 -1.3325 5.6088 19 8 3.3435 -2.6858 5.7040 20 6 3.5686 -3.2844 6.9819 21 1 3.6016 -2.5260 7.7641 22 6 2.4888 -4.3499 7.2907 23 6 3.2737 -5.5052 7.9420 24 8 4.6486 -5.0954 8.0304 25 6 4.8674 -4.1302 6.9763 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8901 32 1 0.7081 1.1611 -3.4844 33 1 3.1300 -0.7209 1.2493 34 1 1.6767 -1.7490 1.2491 35 1 1.4574 -1.2149 4.5932 36 1 3.9238 0.2037 4.1043 37 1 3.9528 -1.4569 3.4641 38 1 3.2688 -0.7234 6.3456 39 1 4.8648 -1.2912 5.7992 40 1 2.0096 -4.6851 6.3709 41 1 1.7468 -3.9542 7.9842 42 1 2.8813 -5.7039 8.9393 43 1 3.1928 -6.4013 7.3268 44 1 4.9934 -4.6338 6.0178 45 1 5.7330 -3.5059 7.1973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921882945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:52 Heat of formation + Delta-G solvation = -166.552266 kcal Electronic energy + Delta-G solvation = -26059.462002 eV Core-core repulsion = 22204.474838 eV Total energy + Delta-G solvation = -3854.987163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.99206 -37.88583 -36.53560 -36.26531 -35.34210 -34.97418 -31.73017 -31.65919 -29.38566 -28.34357 -26.61000 -25.70963 -25.22308 -23.28499 -22.71592 -21.70124 -19.62088 -18.81037 -17.68964 -17.37030 -16.98488 -16.37574 -15.96621 -15.67391 -15.52701 -15.23357 -15.11800 -14.74272 -14.47859 -13.90296 -13.50391 -13.47035 -13.05750 -12.95984 -12.70278 -12.49747 -12.31597 -12.07434 -11.90589 -11.69293 -11.46044 -11.39511 -11.13801 -11.05214 -11.02034 -10.92357 -10.69470 -10.40117 -10.27046 -10.24533 -10.10949 -9.82562 -9.65219 -9.62771 -9.25033 -8.67174 -8.39698 -6.03122 -4.15196 0.88116 3.00208 3.24059 3.27149 3.32628 3.34296 3.70468 4.08812 4.29874 4.35112 4.38949 4.49499 4.62918 4.73430 4.74712 4.87631 4.94278 5.04765 5.22105 5.24944 5.29741 5.34525 5.40411 5.47015 5.52435 5.59833 5.69243 5.71924 5.97123 6.33668 6.39130 6.71117 6.80363 6.81851 6.91278 7.03029 7.16478 7.32149 7.51017 7.68017 7.98629 8.10015 8.33486 8.83167 9.50177 10.98143 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018300 B = 0.002911 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.670388 B = 9614.990978 C =10395.363839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.581 4.581 13 S 2.595 3.405 14 O -0.965 6.965 15 O -0.966 6.966 16 N -1.127 6.127 17 C 0.118 3.882 18 C 0.053 3.947 19 O -0.367 6.367 20 C 0.056 3.944 21 H 0.081 0.919 22 C -0.158 4.158 23 C 0.048 3.952 24 O -0.376 6.376 25 C 0.026 3.974 26 H 0.028 0.972 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.414 0.586 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.999 -7.867 19.043 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.715 4.715 13 S 2.692 3.308 14 O -0.955 6.955 15 O -0.956 6.956 16 N -0.885 5.885 17 C -0.008 4.008 18 C -0.024 4.024 19 O -0.286 6.286 20 C -0.003 4.003 21 H 0.099 0.901 22 C -0.196 4.196 23 C -0.029 4.029 24 O -0.295 6.295 25 C -0.051 4.051 26 H 0.046 0.954 27 H 0.113 0.887 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.248 0.752 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.570 -7.036 18.909 20.931 hybrid contribution 0.460 -1.103 -0.846 1.464 sum 6.030 -8.139 18.064 20.710 Atomic orbital electron populations 1.22278 0.96941 1.00652 1.02312 1.17920 0.92816 0.92179 0.89082 1.22278 0.99682 0.97834 1.02356 1.20921 1.31785 1.12107 0.89447 0.92353 1.24938 0.94888 0.94976 0.98917 1.69791 1.36234 1.22590 1.23579 0.86596 0.79140 0.79724 0.82150 1.20278 1.21198 1.20273 1.30513 1.11172 1.12941 1.16877 1.05572 0.74400 0.75173 0.75628 1.93553 1.29532 1.86691 1.85753 1.93533 1.78211 1.38286 1.85594 1.55760 1.13745 1.71110 1.47916 1.21313 0.81450 1.01790 0.96275 1.22839 0.99201 0.82753 0.97643 1.87975 1.82534 1.26679 1.31430 1.23658 0.94663 0.95480 0.86487 0.90144 1.23014 0.98380 0.95494 1.02694 1.23134 0.81676 0.96696 1.01389 1.88938 1.27293 1.60628 1.52613 1.24059 0.98157 0.90789 0.92121 0.95354 0.88662 0.94468 0.94494 0.88681 0.95296 0.92690 0.86520 0.86214 0.75224 0.88645 0.90787 0.92036 0.91647 0.88970 0.89707 0.89582 0.91895 0.90872 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 7.77 37.16 0.29 -3.76 16 2 C 0.08 1.99 0.52 -155.66 -0.08 1.90 16 3 C -0.16 -4.00 7.78 37.16 0.29 -3.71 16 4 C -0.50 -13.20 8.01 -34.44 -0.28 -13.48 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.13 9.35 55.43 0.52 -23.61 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 C -0.58 -11.20 5.01 37.16 0.19 -11.02 16 13 S 2.59 47.10 4.49 -107.50 -0.48 46.62 16 14 O -0.96 -20.17 15.70 -57.54 -0.90 -21.07 16 15 O -0.97 -19.71 15.12 -57.54 -0.87 -20.58 16 16 N -1.13 -15.00 5.85 -10.61 -0.06 -15.06 16 17 C 0.12 1.27 6.52 -4.04 -0.03 1.25 16 18 C 0.05 0.45 5.96 37.16 0.22 0.67 16 19 O -0.37 -3.50 9.91 -35.23 -0.35 -3.85 16 20 C 0.06 0.44 3.63 -24.73 -0.09 0.35 16 21 H 0.08 0.54 7.83 -51.93 -0.41 0.14 16 22 C -0.16 -1.13 6.78 -25.20 -0.17 -1.30 16 23 C 0.05 0.34 7.69 37.73 0.29 0.63 16 24 O -0.38 -3.57 11.54 -35.23 -0.41 -3.98 16 25 C 0.03 0.21 7.45 38.21 0.28 0.49 16 26 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 27 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 28 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 31 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 34 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 35 H 0.41 4.97 8.47 -34.46 -0.29 4.68 16 36 H 0.10 0.99 7.69 -51.93 -0.40 0.59 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -32.67 363.97 -8.59 -41.26 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.33 Total: 5.54 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 0.83 Total: -26.35 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.46 Total: -38.67 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -2.53 Total: -49.48 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 47.10 SS G_CDS: -0.48 Total: 46.62 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.67 -8.59 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921882945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.287 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds