Wall clock time and date at job start Fri Apr 10 2020 18:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46940 * 2 1 4 4 C 1.50703 * 109.47134 * 240.00295 * 2 1 3 5 5 H 1.07999 * 119.99913 * 239.99492 * 4 2 1 6 6 C 1.37884 * 119.99673 * 60.00096 * 4 2 1 7 7 N 1.31508 * 120.00096 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99428 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47139 * 60.00074 * 8 6 4 10 10 H 1.48502 * 109.46838 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47433 * 299.99570 * 8 6 4 12 12 C 1.52997 * 109.47126 * 120.00528 * 2 1 3 13 13 S 1.81404 * 109.47119 * 299.99856 * 12 2 1 14 14 O 1.42103 * 110.53861 * 68.37538 * 13 12 2 15 15 O 1.42102 * 110.54387 * 291.62964 * 13 12 2 16 16 N 1.65592 * 104.44956 * 180.02562 * 13 12 2 17 17 C 1.46497 * 120.00275 * 65.00139 * 16 13 12 18 18 C 1.53004 * 109.47054 * 164.99867 * 17 16 13 19 19 O 1.42891 * 109.47229 * 65.00092 * 18 17 16 20 20 C 1.42902 * 114.00371 * 179.97438 * 19 18 17 21 21 H 1.08999 * 110.79649 * 26.37608 * 20 19 18 22 22 C 1.54807 * 110.90592 * 149.99788 * 20 19 18 23 23 C 1.54105 * 104.18504 * 139.12065 * 22 20 19 24 24 O 1.43746 * 107.42259 * 1.95340 * 23 22 20 25 25 C 1.44586 * 106.86832 * 333.67423 * 24 23 22 26 26 H 1.08996 * 109.47168 * 299.99499 * 1 2 3 27 27 H 1.08998 * 109.47335 * 60.00013 * 1 2 3 28 28 H 1.09008 * 109.47068 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46959 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47096 * 300.00133 * 3 2 1 31 31 H 1.09004 * 109.46479 * 60.00387 * 3 2 1 32 32 H 0.97005 * 119.99927 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46943 * 180.02562 * 12 2 1 34 34 H 1.08998 * 109.47322 * 59.99863 * 12 2 1 35 35 H 0.97008 * 119.99729 * 244.99564 * 16 13 12 36 36 H 1.09001 * 109.47359 * 45.00082 * 17 16 13 37 37 H 1.09000 * 109.47467 * 285.00180 * 17 16 13 38 38 H 1.08994 * 109.47237 * 304.99504 * 18 17 16 39 39 H 1.09000 * 109.46840 * 184.99978 * 18 17 16 40 40 H 1.08996 * 110.48875 * 20.44334 * 22 20 19 41 41 H 1.09003 * 110.60294 * 257.84825 * 22 20 19 42 42 H 1.09002 * 109.88076 * 121.45430 * 23 22 20 43 43 H 1.08996 * 109.87584 * 242.45546 * 23 22 20 44 44 H 1.08999 * 110.50225 * 281.37988 * 25 24 23 45 45 H 1.08994 * 110.77338 * 158.50734 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3225 -1.1193 -4.0080 9 1 1.8281 -2.5196 -4.0083 10 1 1.8269 -0.4196 -5.2205 11 1 3.8076 -1.1187 -4.0079 12 6 2.0400 -0.7213 1.2491 13 16 1.4354 0.1337 2.7304 14 8 0.0279 -0.0186 2.8543 15 8 2.0479 1.4099 2.8545 16 7 2.0541 -0.7403 3.9935 17 6 3.5026 -0.7966 4.2053 18 6 3.7923 -1.3325 5.6088 19 8 3.3435 -2.6858 5.7040 20 6 3.5686 -3.2844 6.9819 21 1 3.6016 -2.5260 7.7641 22 6 2.4888 -4.3499 7.2907 23 6 3.2737 -5.5052 7.9420 24 8 4.6486 -5.0954 8.0304 25 6 4.8674 -4.1302 6.9763 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8901 32 1 0.7081 1.1611 -3.4844 33 1 3.1300 -0.7209 1.2493 34 1 1.6767 -1.7490 1.2491 35 1 1.4574 -1.2149 4.5932 36 1 3.9238 0.2037 4.1043 37 1 3.9528 -1.4569 3.4641 38 1 3.2688 -0.7234 6.3456 39 1 4.8648 -1.2912 5.7992 40 1 2.0096 -4.6851 6.3709 41 1 1.7468 -3.9542 7.9842 42 1 2.8813 -5.7039 8.9393 43 1 3.1928 -6.4013 7.3268 44 1 4.9934 -4.6338 6.0178 45 1 5.7330 -3.5059 7.1973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921882945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:51 Heat of formation + Delta-G solvation = -190.980261 kcal Electronic energy + Delta-G solvation = -26060.521279 eV Core-core repulsion = 22204.474838 eV Total energy + Delta-G solvation = -3856.046440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.58962 -38.58363 -38.10682 -38.06296 -36.87825 -35.96156 -33.62320 -32.34825 -30.05131 -29.08376 -28.26884 -27.67340 -27.23613 -23.92425 -23.42589 -22.27377 -21.37088 -20.25651 -18.78274 -18.33579 -17.90236 -17.67535 -17.25167 -16.89653 -16.65607 -16.45128 -16.08201 -15.92078 -15.61755 -15.02014 -14.69110 -14.50276 -14.40718 -14.17804 -14.09592 -13.79126 -13.65195 -13.19659 -13.04221 -12.93534 -12.85413 -12.78749 -12.51106 -12.48535 -12.31379 -12.23669 -12.15322 -12.11874 -11.94293 -11.65071 -11.54746 -11.35532 -10.83330 -10.68768 -10.43269 -10.40266 -10.28399 -8.02205 -6.20923 -0.57012 1.45801 1.46246 1.53398 1.93366 2.42832 2.44906 2.88124 3.13490 3.19974 3.35759 3.53834 3.79591 3.89325 3.98506 4.04608 4.18167 4.21553 4.24538 4.31852 4.47461 4.58266 4.62622 4.68683 4.73890 4.79781 4.83978 4.87801 4.88777 4.97425 5.00223 5.03482 5.05136 5.10875 5.40514 5.52600 5.65414 5.76249 5.99308 6.12439 6.14738 6.23443 6.35552 6.83904 7.47395 8.97364 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018300 B = 0.002911 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.670388 B = 9614.990978 C =10395.363839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.587 4.587 13 S 2.617 3.383 14 O -0.995 6.995 15 O -0.989 6.989 16 N -1.112 6.112 17 C 0.104 3.896 18 C 0.054 3.946 19 O -0.384 6.384 20 C 0.054 3.946 21 H 0.094 0.906 22 C -0.158 4.158 23 C 0.044 3.956 24 O -0.397 6.397 25 C 0.024 3.976 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.261 0.739 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.423 0.577 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.229 -8.903 20.337 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.196 1.196 12 C -0.719 4.719 13 S 2.714 3.286 14 O -0.986 6.986 15 O -0.979 6.979 16 N -0.873 5.873 17 C -0.022 4.022 18 C -0.023 4.023 19 O -0.303 6.303 20 C -0.004 4.004 21 H 0.112 0.888 22 C -0.196 4.196 23 C -0.032 4.032 24 O -0.316 6.316 25 C -0.053 4.053 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.259 0.741 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.803 -8.082 20.201 22.797 hybrid contribution 0.099 -0.806 -1.178 1.430 sum 6.902 -8.888 19.023 22.102 Atomic orbital electron populations 1.22220 0.97935 1.00396 1.01349 1.17908 0.92209 0.92232 0.90909 1.22205 0.99929 0.98255 1.01379 1.21297 1.31721 1.12335 0.90506 0.91902 1.25675 0.95185 0.95646 1.01660 1.69938 1.37131 1.23705 1.23891 0.85680 0.78805 0.78678 0.78853 1.19831 1.21368 1.19587 1.30456 1.12640 1.13257 1.15583 1.04606 0.73428 0.74839 0.75745 1.93504 1.31695 1.87114 1.86242 1.93500 1.78470 1.39939 1.85993 1.55308 1.15320 1.70565 1.46151 1.21663 0.79427 1.02692 0.98379 1.22888 1.00946 0.82395 0.96122 1.87947 1.82837 1.27163 1.32399 1.23752 0.94646 0.95819 0.86216 0.88767 1.23033 0.98510 0.95401 1.02612 1.23262 0.80880 0.96739 1.02341 1.88913 1.28482 1.61107 1.53114 1.24126 0.98906 0.90729 0.91520 0.94825 0.91084 0.94294 0.93911 0.91189 0.94712 0.92934 0.84371 0.84809 0.74144 0.88191 0.89748 0.91200 0.88982 0.89809 0.88459 0.88156 0.91796 0.91652 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.04 7.77 71.98 0.56 -7.48 16 2 C 0.07 3.32 0.52 -52.93 -0.03 3.30 16 3 C -0.16 -7.83 7.78 71.98 0.56 -7.27 16 4 C -0.52 -26.96 8.01 25.60 0.21 -26.76 16 5 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 6 C 0.02 0.94 5.15 84.66 0.44 1.37 16 7 N -0.91 -50.31 9.35 21.45 0.20 -50.11 16 8 Si 0.95 42.02 29.54 68.60 2.03 44.05 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 C -0.59 -21.72 5.01 71.98 0.36 -21.36 16 13 S 2.62 91.52 4.49 -56.49 -0.25 91.27 16 14 O -1.00 -40.83 15.70 -127.65 -2.00 -42.84 16 15 O -0.99 -39.19 15.12 -127.65 -1.93 -41.12 16 16 N -1.11 -27.11 5.85 -187.49 -1.10 -28.20 16 17 C 0.10 1.95 6.52 86.38 0.56 2.51 16 18 C 0.05 0.74 5.96 71.98 0.43 1.17 16 19 O -0.38 -6.34 9.91 -148.98 -1.48 -7.82 16 20 C 0.05 0.72 3.63 31.89 0.12 0.84 16 21 H 0.09 1.00 7.83 -2.39 -0.02 0.98 16 22 C -0.16 -1.98 6.78 31.58 0.21 -1.76 16 23 C 0.04 0.57 7.69 72.36 0.56 1.12 16 24 O -0.40 -6.95 11.54 -148.98 -1.72 -8.67 16 25 C 0.02 0.34 7.45 72.66 0.54 0.88 16 26 H 0.03 1.59 5.46 -2.39 -0.01 1.58 16 27 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 28 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 31 H 0.03 1.61 5.46 -2.39 -0.01 1.60 16 32 H 0.26 13.90 8.31 -92.70 -0.77 13.13 16 33 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 34 H 0.13 4.52 8.14 -2.39 -0.02 4.50 16 35 H 0.42 9.21 8.47 -96.74 -0.82 8.39 16 36 H 0.10 1.82 7.69 -2.39 -0.02 1.80 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 41 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -69.29 363.97 -1.58 -70.86 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.16 Total: 26.00 kcal Atomic # 6 Polarization: -57.94 SS G_CDS: 4.51 Total: -53.42 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -0.90 Total: -78.31 kcal Atomic # 8 Polarization: -93.31 SS G_CDS: -7.13 Total: -100.44 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 91.52 SS G_CDS: -0.25 Total: 91.27 kcal Total: -69.29 -1.58 -70.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921882945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.119 kcal (2) G-P(sol) polarization free energy of solvation -69.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds