Wall clock time and date at job start Fri Apr 10 2020 18:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99722 * 2 1 4 4 C 1.53004 * 109.46762 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.67715 * 182.23699 * 4 3 2 6 6 C 1.53292 * 109.68006 * 61.71933 * 4 3 2 7 7 O 1.42972 * 109.26047 * 187.90905 * 6 4 3 8 8 C 1.43057 * 114.10706 * 62.54938 * 7 6 4 9 9 C 1.53285 * 109.25377 * 297.45725 * 8 7 6 10 10 N 1.47151 * 108.39034 * 52.30678 * 9 8 7 11 11 S 1.65601 * 120.98460 * 129.43972 * 10 9 8 12 12 O 1.42101 * 104.27542 * 28.86140 * 11 10 9 13 13 O 1.42100 * 104.27247 * 156.72083 * 11 10 9 14 14 C 1.81395 * 104.44944 * 272.78905 * 11 10 9 15 15 C 1.52995 * 109.47132 * 176.34693 * 14 11 10 16 16 C 1.52996 * 109.47490 * 300.00162 * 15 14 11 17 17 C 1.53005 * 109.47011 * 60.00550 * 15 14 11 18 18 C 1.50703 * 109.47422 * 180.02562 * 15 14 11 19 19 H 1.08001 * 119.99730 * 0.02562 * 18 15 14 20 20 C 1.37873 * 120.00240 * 180.02562 * 18 15 14 21 21 N 1.31517 * 120.00220 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 120.00224 * 180.02562 * 20 18 15 23 23 H 1.48492 * 109.47508 * 89.99468 * 22 20 18 24 24 H 1.48500 * 109.47175 * 209.99672 * 22 20 18 25 25 H 1.48505 * 109.46949 * 329.99479 * 22 20 18 26 26 H 1.08999 * 109.47039 * 299.99752 * 1 2 3 27 27 H 1.08996 * 109.46964 * 60.00023 * 1 2 3 28 28 H 1.08998 * 109.46817 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47181 * 60.00568 * 3 2 1 30 30 H 1.09003 * 109.47332 * 300.00101 * 3 2 1 31 31 H 1.08996 * 109.51621 * 307.85587 * 6 4 3 32 32 H 1.08997 * 109.51226 * 67.96664 * 6 4 3 33 33 H 1.09005 * 109.49102 * 177.52542 * 8 7 6 34 34 H 1.09001 * 109.54219 * 57.41777 * 8 7 6 35 35 H 1.09003 * 109.68361 * 292.58074 * 9 8 7 36 36 H 1.08999 * 109.71618 * 172.05144 * 9 8 7 37 37 H 1.09001 * 109.47231 * 296.35196 * 14 11 10 38 38 H 1.09006 * 109.47069 * 56.35158 * 14 11 10 39 39 H 1.09008 * 109.46879 * 59.99678 * 16 15 14 40 40 H 1.09006 * 109.47597 * 179.97438 * 16 15 14 41 41 H 1.08995 * 109.47483 * 300.00293 * 16 15 14 42 42 H 1.08991 * 109.47132 * 59.99664 * 17 15 14 43 43 H 1.08999 * 109.46977 * 180.02562 * 17 15 14 44 44 H 1.09008 * 109.46719 * 299.99930 * 17 15 14 45 45 H 0.97000 * 120.00488 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9824 2.1781 0.0394 6 6 3.9955 0.4624 -1.2721 7 8 5.3961 0.1903 -1.1793 8 6 5.7518 -0.6817 -0.1024 9 6 5.3815 -0.0180 1.2288 10 7 3.9715 0.3978 1.1639 11 16 2.9067 -0.0084 2.3654 12 8 3.7144 -0.1084 3.5303 13 8 1.8793 0.9684 2.2679 14 6 2.2808 -1.6410 1.8826 15 6 1.3452 -2.1708 2.9711 16 6 2.1118 -2.2881 4.2899 17 6 0.1707 -1.2062 3.1478 18 6 0.8256 -3.5275 2.5703 19 1 1.1324 -3.9680 1.6332 20 6 -0.0414 -4.2063 3.4000 21 7 -0.4147 -3.6701 4.5415 22 14 -0.6849 -5.8883 2.9036 23 1 0.2321 -6.9393 3.4131 24 1 -2.0384 -6.0903 3.4801 25 1 -0.7600 -5.9722 1.4229 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8465 -0.8900 31 1 3.4488 -0.4747 -1.3766 32 1 3.8042 1.0944 -2.1393 33 1 6.8247 -0.8725 -0.1282 34 1 5.2120 -1.6234 -0.2023 35 1 6.0143 0.8543 1.3927 36 1 5.5176 -0.7284 2.0442 37 1 1.7346 -1.5575 0.9430 38 1 3.1175 -2.3283 1.7567 39 1 2.4879 -1.3069 4.5800 40 1 1.4450 -2.6651 5.0655 41 1 2.9484 -2.9752 4.1641 42 1 -0.3754 -1.1227 2.2083 43 1 -0.4957 -1.5834 3.9236 44 1 0.5468 -0.2251 3.4379 45 1 -1.0244 -4.1479 5.1254 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922059041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:57 Heat of formation + Delta-G solvation = -148.346179 kcal Electronic energy + Delta-G solvation = -29005.268219 eV Core-core repulsion = 25151.070531 eV Total energy + Delta-G solvation = -3854.197688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.61449 -39.11533 -38.15213 -37.56160 -36.88409 -35.75599 -33.59374 -33.05471 -28.96940 -28.28208 -27.80492 -27.37188 -27.17508 -26.37087 -23.89401 -22.32665 -21.15527 -19.90156 -18.94433 -17.96329 -17.91096 -17.43860 -16.94119 -16.63845 -16.56922 -16.39983 -16.32769 -16.07797 -15.72955 -15.27710 -14.92555 -14.81666 -14.36804 -14.30498 -13.97259 -13.63721 -13.39275 -13.14835 -12.92323 -12.86259 -12.76169 -12.62758 -12.56744 -12.37516 -12.24072 -12.17149 -12.11065 -11.94115 -11.77881 -11.51076 -11.40423 -11.30124 -11.01550 -10.55895 -10.38995 -10.09057 -9.71499 -8.00845 -6.18839 -0.51750 1.42862 1.45237 1.53479 1.75206 2.44816 2.78196 2.93644 2.96621 3.21085 3.31361 3.53799 3.76124 4.00950 4.15858 4.19358 4.23205 4.36724 4.40066 4.49137 4.61414 4.63345 4.66443 4.70283 4.74524 4.85245 4.89654 4.98180 5.01682 5.04033 5.07179 5.10964 5.21984 5.31494 5.48524 5.52175 5.62176 5.66988 6.01445 6.14857 6.16237 6.24259 6.38573 6.85744 7.49009 8.98665 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017552 B = 0.005268 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.851645 B = 5314.116419 C = 5405.768681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.410 6.410 3 C -0.005 4.005 4 C 0.128 3.872 5 H 0.111 0.889 6 C 0.054 3.946 7 O -0.388 6.388 8 C 0.047 3.953 9 C 0.079 3.921 10 N -1.002 6.002 11 S 2.613 3.387 12 O -1.005 7.005 13 O -0.969 6.969 14 C -0.581 4.581 15 C 0.076 3.924 16 C -0.164 4.164 17 C -0.151 4.151 18 C -0.511 4.511 19 H 0.058 0.942 20 C 0.020 3.980 21 N -0.908 5.908 22 Si 0.949 3.051 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.267 1.267 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.159 0.841 38 H 0.111 0.889 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.022 0.978 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.898 9.216 -12.860 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.330 6.330 3 C -0.083 4.083 4 C 0.022 3.978 5 H 0.128 0.872 6 C -0.024 4.024 7 O -0.306 6.306 8 C -0.031 4.031 9 C -0.046 4.046 10 N -0.841 5.841 11 S 2.715 3.285 12 O -0.996 6.996 13 O -0.960 6.960 14 C -0.714 4.714 15 C 0.074 3.926 16 C -0.221 4.221 17 C -0.209 4.209 18 C -0.550 4.550 19 H 0.076 0.924 20 C -0.179 4.179 21 N -0.547 5.547 22 Si 0.776 3.224 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.191 1.191 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.136 0.864 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.176 0.824 38 H 0.129 0.871 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.041 0.959 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.862 9.663 -12.049 17.331 hybrid contribution -0.864 -1.520 0.133 1.753 sum 6.999 8.143 -11.916 16.040 Atomic orbital electron populations 1.22852 0.79547 1.03027 1.01088 1.87639 1.21732 1.28118 1.95526 1.23951 0.91129 0.87190 1.05992 1.21988 0.93548 0.96342 0.85927 0.87160 1.23105 0.81642 1.00790 0.96903 1.87930 1.24239 1.67964 1.50444 1.23117 1.02926 0.92112 0.84959 1.22279 0.80903 1.01525 0.99856 1.57789 1.20331 1.68133 1.37860 1.04907 0.73276 0.77790 0.72521 1.93449 1.69623 1.88432 1.48074 1.93343 1.59373 1.57762 1.85481 1.30715 1.10296 1.18873 1.11473 1.17842 0.90533 0.95319 0.88879 1.22280 0.99311 0.99060 1.01497 1.22158 1.00827 0.95558 1.02345 1.21256 1.26937 1.01870 1.04954 0.92379 1.25620 0.96506 1.00805 0.94984 1.69947 1.34584 1.38863 1.11312 0.85693 0.77478 0.80608 0.78665 1.20680 1.21144 1.19142 0.93910 0.91456 0.90053 0.86441 0.88959 0.92235 0.85387 0.85064 0.92621 0.89175 0.89069 0.82408 0.87072 0.94831 0.91196 0.94867 0.92769 0.91604 0.95876 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.21 113.37 1.04 1.87 16 2 O -0.41 -11.57 4.99 -128.11 -0.64 -12.21 16 3 C -0.01 -0.12 4.62 71.98 0.33 0.21 16 4 C 0.13 2.90 3.45 44.97 0.15 3.06 16 5 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 6 C 0.05 1.06 6.24 72.08 0.45 1.51 16 7 O -0.39 -8.36 10.75 -148.98 -1.60 -9.96 16 8 C 0.05 0.93 6.98 72.08 0.50 1.44 16 9 C 0.08 1.90 6.49 86.35 0.56 2.46 16 10 N -1.00 -28.46 3.23 -489.38 -1.58 -30.04 16 11 S 2.61 98.26 3.68 -56.49 -0.21 98.05 16 12 O -1.01 -44.00 14.26 -127.65 -1.82 -45.82 16 13 O -0.97 -37.35 10.34 -119.27 -1.23 -38.59 16 14 C -0.58 -23.22 4.69 71.98 0.34 -22.89 16 15 C 0.08 3.71 0.52 -52.93 -0.03 3.68 16 16 C -0.16 -8.38 7.77 71.98 0.56 -7.82 16 17 C -0.15 -7.30 7.79 71.98 0.56 -6.74 16 18 C -0.51 -26.70 8.01 25.60 0.21 -26.49 16 19 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 20 C 0.02 1.06 5.15 84.65 0.44 1.50 16 21 N -0.91 -50.28 9.35 21.45 0.20 -50.08 16 22 Si 0.95 42.15 29.54 68.60 2.03 44.18 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H 0.04 1.28 7.35 -2.39 -0.02 1.27 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 2.34 7.85 -2.39 -0.02 2.33 16 29 H 0.12 3.39 5.03 -58.83 -0.30 3.09 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.31 7.54 -2.39 -0.02 1.29 16 32 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.13 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 2.29 7.31 -2.39 -0.02 2.27 16 37 H 0.16 5.95 4.69 -2.39 -0.01 5.94 16 38 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 39 H 0.03 1.66 5.29 -2.38 -0.01 1.65 16 40 H 0.07 3.88 6.07 -2.38 -0.01 3.86 16 41 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.05 2.39 5.79 -2.39 -0.01 2.38 16 43 H 0.07 3.52 6.07 -2.39 -0.01 3.50 16 44 H 0.02 1.06 5.64 -2.38 -0.01 1.04 16 45 H 0.26 13.83 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -65.98 336.34 0.97 -65.01 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.71 Total: 27.68 kcal Atomic # 6 Polarization: -53.34 SS G_CDS: 5.12 Total: -48.22 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.38 Total: -80.12 kcal Atomic # 8 Polarization: -101.28 SS G_CDS: -5.29 Total: -106.58 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 98.26 SS G_CDS: -0.21 Total: 98.05 kcal Total: -65.98 0.97 -65.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922059041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.333 kcal (2) G-P(sol) polarization free energy of solvation -65.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds