Wall clock time and date at job start Fri Apr 10 2020 18:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.54454 * 112.29750 * 2 1 4 4 N 1.48336 * 104.32555 * 96.98382 * 3 2 1 5 5 C 1.36928 * 128.19909 * 221.80342 * 4 3 2 6 6 H 1.08003 * 119.99858 * 164.10561 * 5 4 3 7 7 C 1.38809 * 120.00587 * 344.11521 * 5 4 3 8 8 N 1.31626 * 119.99745 * 350.52945 * 7 5 4 9 9 Si 1.86805 * 120.00592 * 170.52736 * 7 5 4 10 10 H 1.48503 * 109.46785 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47127 * 119.99946 * 9 7 5 12 12 H 1.48497 * 109.47158 * 239.99945 * 9 7 5 13 13 C 1.48335 * 103.59868 * 41.80920 * 4 3 2 14 14 C 1.54451 * 104.32563 * 318.19295 * 13 4 3 15 15 H 1.09005 * 112.29657 * 263.01389 * 14 13 4 16 16 C 1.53741 * 109.01299 * 137.92839 * 14 13 4 17 17 N 1.48247 * 105.90288 * 229.74469 * 16 14 13 18 18 C 1.34775 * 126.41900 * 211.08951 * 17 16 14 19 19 O 1.21280 * 119.99926 * 179.69177 * 18 17 16 20 20 C 1.50697 * 119.99745 * 359.69492 * 18 17 16 21 21 C 1.50696 * 109.47175 * 180.02562 * 20 18 17 22 22 C 1.33647 * 126.03965 * 89.71050 * 21 20 18 23 23 N 1.31776 * 114.49935 * 179.79264 * 22 21 20 24 24 C 1.29030 * 117.12805 * 0.52024 * 23 22 21 25 25 S 1.70976 * 110.16309 * 359.71522 * 24 23 22 26 26 C 1.47196 * 106.87667 * 30.83153 * 17 16 14 27 27 H 1.08994 * 109.47069 * 302.35114 * 1 2 3 28 28 H 1.09002 * 109.47068 * 62.35014 * 1 2 3 29 29 H 1.08998 * 109.46567 * 182.34677 * 1 2 3 30 30 H 1.08998 * 110.46389 * 338.27707 * 3 2 1 31 31 H 1.09004 * 110.57076 * 215.75123 * 3 2 1 32 32 H 0.97000 * 120.00038 * 180.02562 * 8 7 5 33 33 H 1.08998 * 110.46154 * 199.47930 * 13 4 3 34 34 H 1.09004 * 110.57026 * 76.96104 * 13 4 3 35 35 H 1.08999 * 110.06546 * 348.12638 * 16 14 13 36 36 H 1.09000 * 110.06023 * 109.64570 * 16 14 13 37 37 H 1.09008 * 109.47173 * 299.99825 * 20 18 17 38 38 H 1.08995 * 109.47499 * 59.99590 * 20 18 17 39 39 H 1.07992 * 122.74754 * 359.97438 * 22 21 20 40 40 H 1.07996 * 124.92179 * 179.68626 * 24 23 22 41 41 H 1.09005 * 110.06442 * 209.64248 * 26 17 16 42 42 H 1.09006 * 110.11377 * 88.15448 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1160 1.4290 0.0000 4 7 2.4170 1.7023 1.4266 5 6 2.2026 2.8567 2.1311 6 1 2.2277 2.8429 3.2108 7 6 1.9527 4.0446 1.4579 8 7 2.1047 4.1053 0.1518 9 14 1.4009 5.5571 2.4052 10 1 1.3062 5.2286 3.8504 11 1 2.3861 6.6508 2.2091 12 1 0.0711 5.9939 1.9093 13 6 3.0053 0.4290 1.9090 14 6 2.1222 -0.6659 1.2712 15 1 1.3493 -1.0226 1.9520 16 6 3.0232 -1.8039 0.7643 17 7 2.6009 -2.0649 -0.6326 18 6 2.6419 -3.2502 -1.2727 19 8 2.2598 -3.3329 -2.4207 20 6 3.1627 -4.4727 -0.5619 21 6 3.1034 -5.6575 -1.4912 22 6 4.0689 -6.0496 -2.3280 23 7 3.7767 -7.1224 -3.0352 24 6 2.6146 -7.6512 -2.8492 25 16 1.7460 -6.7662 -1.6721 26 6 2.1239 -0.7849 -1.1810 27 1 -0.3633 0.5499 0.8681 28 1 -0.3633 0.4769 -0.9103 29 1 -0.3632 -1.0268 0.0421 30 1 1.3829 2.1416 -0.3780 31 1 3.0276 1.4692 -0.5963 32 1 1.9304 4.9355 -0.3186 33 1 2.9547 0.3738 2.9965 34 1 4.0370 0.3314 1.5710 35 1 4.0666 -1.4891 0.7780 36 1 2.8912 -2.6900 1.3851 37 1 4.1950 -4.3029 -0.2556 38 1 2.5505 -4.6697 0.3181 39 1 5.0124 -5.5314 -2.4151 40 1 2.2439 -8.5258 -3.3630 41 1 1.3570 -0.9635 -1.9348 42 1 2.9552 -0.2312 -1.6178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091761212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:10 Heat of formation + Delta-G solvation = 46.868851 kcal Electronic energy + Delta-G solvation = -24831.637138 eV Core-core repulsion = 21325.506280 eV Total energy + Delta-G solvation = -3506.130858 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.125 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.39011 -39.70244 -38.34590 -35.00021 -33.13195 -32.41515 -31.37259 -29.63307 -28.27927 -26.48647 -25.73379 -25.17448 -24.38642 -22.44815 -20.63802 -20.37877 -19.33775 -18.54442 -18.05538 -17.15604 -16.59773 -16.06233 -15.68875 -15.11760 -14.73750 -14.46098 -14.34852 -14.16229 -13.92920 -13.60743 -13.40440 -13.11826 -12.84166 -12.50134 -12.42554 -12.21552 -11.75059 -11.60229 -11.42355 -11.40519 -10.94850 -10.84350 -10.78670 -10.24771 -10.07292 -10.01143 -9.92581 -9.86700 -9.80047 -9.65276 -9.39394 -9.08492 -8.74032 -8.53535 -6.92186 -5.84634 -3.19674 0.49940 1.16580 1.55389 2.62408 2.64284 3.11008 3.34014 3.40418 3.42600 4.13048 4.40622 4.42278 4.54225 4.76617 4.84664 5.02047 5.04866 5.15629 5.17316 5.37578 5.49643 5.51055 5.58531 5.61272 5.67649 5.88973 5.94596 6.00353 6.07082 6.17739 6.22260 6.27454 6.43810 6.59883 6.66346 6.71907 6.88205 7.22282 7.47798 7.50230 7.62948 7.66794 8.14488 8.18726 9.04392 9.68001 10.45521 11.29068 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.039794 B = 0.002576 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.458036 B =10867.637230 C =10948.624623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.094 4.094 3 C 0.166 3.834 4 N -0.593 5.593 5 C -0.226 4.226 6 H 0.077 0.923 7 C -0.005 4.005 8 N -0.913 5.913 9 Si 0.910 3.090 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.289 1.289 13 C 0.131 3.869 14 C -0.110 4.110 15 H 0.084 0.916 16 C 0.104 3.896 17 N -0.614 5.614 18 C 0.527 3.473 19 O -0.538 6.538 20 C -0.061 4.061 21 C -0.195 4.195 22 C 0.042 3.958 23 N -0.470 5.470 24 C 0.012 3.988 25 S 0.133 5.867 26 C 0.119 3.881 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.024 0.976 32 H 0.254 0.746 33 H 0.049 0.951 34 H 0.027 0.973 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.174 0.826 40 H 0.198 0.802 41 H 0.074 0.926 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 -20.443 -0.039 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.097 4.097 3 C 0.040 3.960 4 N -0.316 5.316 5 C -0.354 4.354 6 H 0.094 0.906 7 C -0.202 4.202 8 N -0.559 5.559 9 Si 0.741 3.259 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.216 1.216 13 C 0.004 3.996 14 C -0.131 4.131 15 H 0.103 0.897 16 C -0.018 4.018 17 N -0.347 5.347 18 C 0.315 3.685 19 O -0.416 6.416 20 C -0.103 4.103 21 C -0.316 4.316 22 C -0.109 4.109 23 N -0.183 5.183 24 C -0.285 4.285 25 S 0.385 5.615 26 C -0.003 4.003 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.191 0.809 40 H 0.214 0.786 41 H 0.092 0.908 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.558 -20.673 -0.690 20.692 hybrid contribution 0.596 1.258 0.307 1.425 sum 0.038 -19.416 -0.383 19.419 Atomic orbital electron populations 1.21538 0.93536 1.00046 1.02262 1.22535 0.95800 0.99017 0.92316 1.21780 0.97979 0.89747 0.86476 1.45053 1.69798 1.09148 1.07555 1.19003 1.42301 0.84120 0.89994 0.90573 1.24893 1.01948 0.97368 0.95975 1.69892 1.53324 1.26197 1.06513 0.86079 0.78066 0.82850 0.78936 1.20386 1.21712 1.21620 1.21856 0.93888 0.86798 0.97057 1.23086 0.97808 0.94820 0.97385 0.89745 1.22526 0.99165 0.98726 0.81423 1.48914 1.63078 1.08238 1.14471 1.19979 0.78975 0.83005 0.86581 1.90726 1.48531 1.84873 1.17424 1.20030 1.04676 0.88692 0.96906 1.25328 0.97358 1.02877 1.06063 1.21683 1.01180 0.94154 0.93864 1.66299 1.17374 1.10314 1.24343 1.28328 0.93363 1.04876 1.01924 1.83976 1.19284 1.20903 1.37310 1.22212 0.99025 0.82443 0.96643 0.91785 0.92830 0.94060 0.89055 0.95784 0.93580 0.93278 0.95537 0.90777 0.90906 0.86684 0.87599 0.80907 0.78551 0.90783 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 8.61 37.16 0.32 -1.60 16 2 C -0.09 -1.62 1.08 -152.17 -0.16 -1.79 16 3 C 0.17 3.69 5.11 -2.27 -0.01 3.68 16 4 N -0.59 -14.02 3.37 -168.47 -0.57 -14.59 16 5 C -0.23 -5.95 10.37 -15.06 -0.16 -6.11 16 6 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 7 C 0.00 -0.12 5.40 -17.43 -0.09 -0.22 16 8 N -0.91 -25.79 10.89 55.49 0.60 -25.19 16 9 Si 0.91 21.24 29.56 -169.99 -5.03 16.22 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 C 0.13 2.41 6.76 -2.27 -0.02 2.40 16 14 C -0.11 -1.68 3.71 -88.29 -0.33 -2.01 16 15 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 16 C 0.10 1.27 6.42 -2.70 -0.02 1.25 16 17 N -0.61 -8.63 3.34 -170.80 -0.57 -9.20 16 18 C 0.53 7.38 7.87 -10.99 -0.09 7.30 16 19 O -0.54 -9.64 16.26 5.56 0.09 -9.55 16 20 C -0.06 -0.59 5.23 -29.04 -0.15 -0.74 16 21 C -0.19 -2.13 5.09 -35.92 -0.18 -2.31 16 22 C 0.04 0.49 11.25 -19.18 -0.22 0.27 16 23 N -0.47 -5.69 10.54 -15.75 -0.17 -5.85 16 24 C 0.01 0.12 12.23 51.59 0.63 0.75 16 25 S 0.13 1.27 23.22 -107.50 -2.50 -1.23 16 26 C 0.12 1.93 6.24 -3.28 -0.02 1.91 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.31 6.24 -51.93 -0.32 1.99 16 31 H 0.02 0.57 7.17 -51.93 -0.37 0.20 16 32 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.49 7.17 -51.93 -0.37 0.11 16 35 H 0.07 0.88 7.11 -51.93 -0.37 0.51 16 36 H 0.07 0.66 7.38 -51.93 -0.38 0.27 16 37 H 0.12 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.11 0.82 7.87 -51.93 -0.41 0.41 16 39 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.20 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.07 1.25 7.63 -51.93 -0.40 0.85 16 42 H 0.07 1.22 7.11 -51.93 -0.37 0.85 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -32.38 352.46 -9.23 -41.61 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.91 Total: -0.32 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.49 Total: 2.78 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.70 Total: -54.82 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.50 Total: -1.23 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.38 -9.23 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091761212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.476 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds