Wall clock time and date at job start Fri Apr 10 2020 18:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00231 * 2 1 4 4 H 1.48508 * 109.47297 * 270.00020 * 3 2 1 5 5 H 1.48502 * 109.47276 * 29.99875 * 3 2 1 6 6 H 1.48501 * 109.47351 * 150.00267 * 3 2 1 7 7 C 1.38812 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99943 * 163.08146 * 7 2 1 9 9 N 1.36942 * 120.00320 * 343.08411 * 7 2 1 10 10 C 1.46927 * 120.63286 * 151.83117 * 9 7 2 11 11 C 1.53184 * 108.77254 * 126.37197 * 10 9 7 12 12 C 1.53035 * 109.31692 * 54.63684 * 11 10 9 13 13 H 1.08992 * 109.46211 * 58.63651 * 12 11 10 14 14 N 1.46506 * 109.46131 * 178.61351 * 12 11 10 15 15 C 1.34768 * 119.99954 * 275.02454 * 14 12 11 16 16 O 1.21352 * 120.00292 * 359.97438 * 15 14 12 17 17 C 1.49443 * 120.00231 * 180.02562 * 15 14 12 18 18 O 1.21349 * 119.99934 * 359.97438 * 17 15 14 19 19 N 1.34778 * 120.00345 * 180.02562 * 17 15 14 20 20 C 1.46496 * 120.00187 * 180.27539 * 19 17 15 21 21 C 1.53002 * 109.47314 * 179.72594 * 20 19 17 22 22 F 1.39898 * 109.47132 * 299.99874 * 21 20 19 23 23 F 1.39899 * 109.47258 * 59.99998 * 21 20 19 24 24 C 1.53044 * 109.52437 * 298.62217 * 12 11 10 25 25 H 1.08998 * 109.49810 * 181.32250 * 24 12 11 26 26 O 1.42897 * 109.50020 * 301.42271 * 24 12 11 27 27 C 1.46930 * 120.62484 * 331.81037 * 9 7 2 28 28 H 0.97001 * 119.99794 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58291 * 6.57890 * 10 9 7 30 30 H 1.09005 * 109.58351 * 246.15667 * 10 9 7 31 31 H 1.09000 * 109.49786 * 294.67917 * 11 10 9 32 32 H 1.09001 * 109.52335 * 174.60380 * 11 10 9 33 33 H 0.97004 * 120.00030 * 95.02369 * 14 12 11 34 34 H 0.97004 * 119.99902 * 359.97438 * 19 17 15 35 35 H 1.09009 * 109.47215 * 299.72510 * 20 19 17 36 36 H 1.09003 * 109.47559 * 59.72580 * 20 19 17 37 37 H 1.08997 * 109.47063 * 180.02562 * 21 20 19 38 38 H 0.96697 * 114.00065 * 179.97438 * 26 24 12 39 39 H 1.08996 * 109.58753 * 353.41658 * 27 9 7 40 40 H 1.08994 * 109.58446 * 113.70061 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8139 -3.6530 -0.1978 11 6 2.0682 -4.6169 0.9653 12 6 0.8132 -4.7005 1.8371 13 1 -0.0271 -5.0408 1.2322 14 7 1.0415 -5.6469 2.9319 15 6 0.8377 -6.9647 2.7369 16 8 0.4645 -7.3675 1.6547 17 6 1.0700 -7.9301 3.8538 18 8 1.4427 -7.5274 4.9361 19 7 0.8666 -9.2481 3.6587 20 6 1.0886 -10.1938 4.7553 21 6 0.7817 -11.6135 4.2744 22 9 -0.5519 -11.6869 3.8582 23 9 1.6228 -11.9353 3.2038 24 6 0.4989 -3.3187 2.4150 25 1 -0.3813 -3.3834 3.0546 26 8 1.6132 -2.8574 3.1814 27 6 0.2264 -2.3400 1.2683 28 1 -0.4850 0.8401 0.0004 29 1 2.7344 -3.5134 -0.7647 30 1 1.0401 -4.0610 -0.8481 31 1 2.9033 -4.2527 1.5637 32 1 2.3055 -5.6060 0.5735 33 1 1.3395 -5.3250 3.7971 34 1 0.5690 -9.5700 2.7933 35 1 2.1277 -10.1367 5.0796 36 1 0.4333 -9.9432 5.5895 37 1 0.9464 -12.3170 5.0905 38 1 1.4837 -1.9851 3.5781 39 1 0.0994 -1.3342 1.6687 40 1 -0.6773 -2.6385 0.7370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099902136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:45 Heat of formation + Delta-G solvation = -196.298910 kcal Electronic energy + Delta-G solvation = -27584.924416 eV Core-core repulsion = 23071.266612 eV Total energy + Delta-G solvation = -4513.657804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.50166 -47.49164 -40.74541 -39.04779 -37.82442 -35.66371 -34.82346 -34.33747 -32.11344 -30.32079 -29.54462 -29.12387 -25.92469 -24.53750 -23.00060 -22.32048 -21.68061 -20.47668 -19.73069 -18.65281 -18.07585 -17.91730 -17.26966 -16.79410 -16.64208 -16.01956 -15.84231 -15.45636 -15.21644 -14.88131 -14.62561 -14.23096 -14.10186 -13.87596 -13.83851 -13.77355 -13.34916 -13.13363 -12.97461 -12.78469 -12.21599 -12.05436 -11.81364 -11.67472 -11.31363 -11.19207 -10.81164 -10.63216 -10.52542 -10.22560 -10.10728 -9.81964 -9.75426 -9.61879 -9.22591 -8.88105 -8.53473 -6.71474 -5.84589 -3.25562 1.32774 2.12332 3.10246 3.14600 3.34501 3.42257 3.45286 3.47490 3.61499 3.98342 4.20737 4.41720 4.45793 4.77986 4.90834 4.91813 5.23008 5.34569 5.40719 5.49061 5.68369 5.86606 5.97003 6.09792 6.17069 6.37127 6.45773 6.62106 6.73244 6.75654 6.92658 7.11784 7.30762 7.40583 7.62545 7.75777 8.02018 8.22452 8.40038 9.14787 9.77704 10.34342 11.24396 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.036806 B = 0.002479 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.558534 B =11290.893383 C =11482.880557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.001 4.001 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.066 0.934 9 N -0.583 5.583 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.159 3.841 13 H 0.096 0.904 14 N -0.682 5.682 15 C 0.503 3.497 16 O -0.523 6.523 17 C 0.514 3.486 18 O -0.516 6.516 19 N -0.705 5.705 20 C 0.068 3.932 21 C 0.255 3.745 22 F -0.199 7.199 23 F -0.199 7.199 24 C 0.073 3.927 25 H 0.046 0.954 26 O -0.559 6.559 27 C 0.146 3.854 28 H 0.254 0.746 29 H 0.059 0.941 30 H 0.021 0.979 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.414 0.586 34 H 0.419 0.581 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.377 0.623 39 H 0.097 0.903 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.247 -20.207 11.480 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.022 3.978 11 C -0.178 4.178 12 C 0.056 3.944 13 H 0.114 0.886 14 N -0.334 5.334 15 C 0.282 3.718 16 O -0.400 6.400 17 C 0.295 3.705 18 O -0.391 6.391 19 N -0.361 5.361 20 C -0.057 4.057 21 C 0.201 3.799 22 F -0.180 7.180 23 F -0.180 7.180 24 C 0.011 3.989 25 H 0.064 0.936 26 O -0.364 6.364 27 C 0.018 3.982 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.251 0.749 34 H 0.256 0.744 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.147 0.853 38 H 0.224 0.776 39 H 0.115 0.885 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.387 -20.612 11.245 23.483 hybrid contribution 0.069 1.297 0.102 1.303 sum 0.456 -19.315 11.347 22.406 Atomic orbital electron populations 1.70013 1.05228 1.25562 1.54416 1.25030 0.95300 0.98418 1.01095 0.86290 0.79165 0.83515 0.77770 1.21422 1.21631 1.20461 1.19168 0.92574 0.84646 1.40942 0.91662 1.43885 1.35475 1.01765 1.49371 1.20891 0.98053 0.86358 0.92519 1.22337 0.97363 0.99568 0.98532 1.21232 0.99788 0.86263 0.87109 0.88633 1.46084 1.65027 1.05105 1.17146 1.19867 0.79939 0.84050 0.87942 1.90779 1.45500 1.78146 1.25526 1.20395 0.78104 0.83217 0.88785 1.90774 1.44160 1.78267 1.25871 1.45502 1.68586 1.05961 1.16047 1.22620 1.05352 0.86183 0.91503 1.22231 0.72776 0.97819 0.87092 1.93042 1.35652 1.97407 1.91946 1.93044 1.71098 1.94013 1.59858 1.22843 0.87847 0.93697 0.94468 0.93632 1.86352 1.41673 1.38779 1.69639 1.21450 0.89738 0.98378 0.88603 0.93610 0.92255 0.96106 0.90905 0.92738 0.74916 0.74385 0.87718 0.87747 0.85266 0.77607 0.88500 0.95281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.36 11.20 55.49 0.62 -24.74 16 2 C 0.00 -0.02 4.92 -17.43 -0.09 -0.10 16 3 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.24 -6.50 9.58 -15.06 -0.14 -6.64 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.58 -14.09 2.93 -172.32 -0.51 -14.60 16 10 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 11 C -0.14 -2.55 5.51 -26.62 -0.15 -2.70 16 12 C 0.16 2.76 2.20 -67.89 -0.15 2.62 16 13 H 0.10 1.74 7.58 -51.93 -0.39 1.35 16 14 N -0.68 -10.42 5.04 -54.20 -0.27 -10.69 16 15 C 0.50 7.50 7.85 -11.59 -0.09 7.41 16 16 O -0.52 -8.84 16.14 5.50 0.09 -8.75 16 17 C 0.51 6.58 7.89 -11.59 -0.09 6.49 16 18 O -0.52 -7.37 16.48 5.50 0.09 -7.28 16 19 N -0.71 -6.97 5.41 -60.73 -0.33 -7.30 16 20 C 0.07 0.43 5.91 -4.04 -0.02 0.40 16 21 C 0.25 1.27 5.42 37.16 0.20 1.48 16 22 F -0.20 -1.52 17.20 2.25 0.04 -1.48 16 23 F -0.20 -1.53 17.20 2.25 0.04 -1.49 16 24 C 0.07 1.30 3.38 -26.61 -0.09 1.21 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 O -0.56 -9.84 12.08 -35.23 -0.43 -10.27 16 27 C 0.15 3.23 4.95 -3.71 -0.02 3.22 16 28 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.43 7.61 -51.93 -0.40 1.04 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.41 6.10 7.73 -40.82 -0.32 5.78 16 34 H 0.42 4.16 7.83 -40.82 -0.32 3.84 16 35 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.13 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.38 5.73 9.08 45.56 0.41 6.14 16 39 H 0.10 2.37 6.06 -51.93 -0.31 2.05 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 345.72 15.07 5.21 5.21 Total: -1.00 -32.25 345.72 -5.38 -37.63 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -4.24 Total: 11.11 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: -0.66 Total: 16.50 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.49 Total: -57.32 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.25 Total: -26.30 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.08 Total: -2.97 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.25 -5.38 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099902136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.670 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds