Wall clock time and date at job start Fri Apr 10 2020 18:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00231 * 2 1 4 4 H 1.48508 * 109.47297 * 270.00020 * 3 2 1 5 5 H 1.48502 * 109.47276 * 29.99875 * 3 2 1 6 6 H 1.48501 * 109.47351 * 150.00267 * 3 2 1 7 7 C 1.38812 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99943 * 163.08146 * 7 2 1 9 9 N 1.36942 * 120.00320 * 343.08411 * 7 2 1 10 10 C 1.46927 * 120.63286 * 151.83117 * 9 7 2 11 11 C 1.53184 * 108.77254 * 126.37197 * 10 9 7 12 12 C 1.53035 * 109.31692 * 54.63684 * 11 10 9 13 13 H 1.08992 * 109.46211 * 58.63651 * 12 11 10 14 14 N 1.46506 * 109.46131 * 178.61351 * 12 11 10 15 15 C 1.34768 * 119.99954 * 275.02454 * 14 12 11 16 16 O 1.21352 * 120.00292 * 359.97438 * 15 14 12 17 17 C 1.49443 * 120.00231 * 180.02562 * 15 14 12 18 18 O 1.21349 * 119.99934 * 359.97438 * 17 15 14 19 19 N 1.34778 * 120.00345 * 180.02562 * 17 15 14 20 20 C 1.46496 * 120.00187 * 180.27539 * 19 17 15 21 21 C 1.53002 * 109.47314 * 179.72594 * 20 19 17 22 22 F 1.39898 * 109.47132 * 299.99874 * 21 20 19 23 23 F 1.39899 * 109.47258 * 59.99998 * 21 20 19 24 24 C 1.53044 * 109.52437 * 298.62217 * 12 11 10 25 25 H 1.08998 * 109.49810 * 181.32250 * 24 12 11 26 26 O 1.42897 * 109.50020 * 301.42271 * 24 12 11 27 27 C 1.46930 * 120.62484 * 331.81037 * 9 7 2 28 28 H 0.97001 * 119.99794 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58291 * 6.57890 * 10 9 7 30 30 H 1.09005 * 109.58351 * 246.15667 * 10 9 7 31 31 H 1.09000 * 109.49786 * 294.67917 * 11 10 9 32 32 H 1.09001 * 109.52335 * 174.60380 * 11 10 9 33 33 H 0.97004 * 120.00030 * 95.02369 * 14 12 11 34 34 H 0.97004 * 119.99902 * 359.97438 * 19 17 15 35 35 H 1.09009 * 109.47215 * 299.72510 * 20 19 17 36 36 H 1.09003 * 109.47559 * 59.72580 * 20 19 17 37 37 H 1.08997 * 109.47063 * 180.02562 * 21 20 19 38 38 H 0.96697 * 114.00065 * 179.97438 * 26 24 12 39 39 H 1.08996 * 109.58753 * 353.41658 * 27 9 7 40 40 H 1.08994 * 109.58446 * 113.70061 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8139 -3.6530 -0.1978 11 6 2.0682 -4.6169 0.9653 12 6 0.8132 -4.7005 1.8371 13 1 -0.0271 -5.0408 1.2322 14 7 1.0415 -5.6469 2.9319 15 6 0.8377 -6.9647 2.7369 16 8 0.4645 -7.3675 1.6547 17 6 1.0700 -7.9301 3.8538 18 8 1.4427 -7.5274 4.9361 19 7 0.8666 -9.2481 3.6587 20 6 1.0886 -10.1938 4.7553 21 6 0.7817 -11.6135 4.2744 22 9 -0.5519 -11.6869 3.8582 23 9 1.6228 -11.9353 3.2038 24 6 0.4989 -3.3187 2.4150 25 1 -0.3813 -3.3834 3.0546 26 8 1.6132 -2.8574 3.1814 27 6 0.2264 -2.3400 1.2683 28 1 -0.4850 0.8401 0.0004 29 1 2.7344 -3.5134 -0.7647 30 1 1.0401 -4.0610 -0.8481 31 1 2.9033 -4.2527 1.5637 32 1 2.3055 -5.6060 0.5735 33 1 1.3395 -5.3250 3.7971 34 1 0.5690 -9.5700 2.7933 35 1 2.1277 -10.1367 5.0796 36 1 0.4333 -9.9432 5.5895 37 1 0.9464 -12.3170 5.0905 38 1 1.4837 -1.9851 3.5781 39 1 0.0994 -1.3342 1.6687 40 1 -0.6773 -2.6385 0.7370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099902136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:44 Heat of formation + Delta-G solvation = -223.182873 kcal Electronic energy + Delta-G solvation = -27586.090192 eV Core-core repulsion = 23071.266612 eV Total energy + Delta-G solvation = -4514.823580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.133 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.97572 -47.98520 -41.87167 -40.32061 -39.20475 -36.65638 -36.41434 -35.63526 -33.89985 -31.35878 -30.88726 -30.70763 -27.45260 -25.82509 -24.15255 -23.71202 -23.03187 -21.56393 -21.17836 -19.88139 -19.01245 -18.65795 -18.39875 -17.83399 -17.45834 -17.21741 -17.05412 -16.96703 -16.57051 -16.08090 -15.65211 -15.54818 -15.39210 -15.16828 -14.98571 -14.85078 -14.50635 -14.35236 -13.91941 -13.78593 -13.66432 -13.45312 -13.16608 -12.96197 -12.77711 -12.62255 -12.40205 -12.26313 -12.12460 -12.02019 -11.85590 -11.47563 -10.86790 -10.72489 -10.58437 -10.54424 -10.21747 -8.67143 -7.87659 -5.31489 0.23981 1.15564 1.48195 1.50721 1.60190 2.04069 2.45434 2.52376 2.69214 3.23472 3.29976 3.32066 3.38263 3.56366 3.65819 3.81924 3.89168 3.96756 4.31536 4.36277 4.45945 4.48867 4.59145 4.65665 4.81843 4.90219 4.90869 5.06079 5.16315 5.26144 5.42398 5.55925 5.65830 5.74872 6.22389 6.38026 6.58964 6.84232 6.91674 7.15260 7.83065 8.35634 9.18942 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.036806 B = 0.002479 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.558534 B =11290.893383 C =11482.880557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.966 3.034 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.254 4.254 8 H 0.061 0.939 9 N -0.599 5.599 10 C 0.146 3.854 11 C -0.122 4.122 12 C 0.165 3.835 13 H 0.088 0.912 14 N -0.677 5.677 15 C 0.502 3.498 16 O -0.545 6.545 17 C 0.520 3.480 18 O -0.532 6.532 19 N -0.696 5.696 20 C 0.061 3.939 21 C 0.255 3.745 22 F -0.215 7.215 23 F -0.216 7.216 24 C 0.089 3.911 25 H 0.071 0.929 26 O -0.563 6.563 27 C 0.151 3.849 28 H 0.251 0.749 29 H 0.057 0.943 30 H 0.017 0.983 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.419 0.581 34 H 0.418 0.582 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.181 0.819 38 H 0.388 0.612 39 H 0.073 0.927 40 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 -21.622 13.096 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.241 4.241 3 Si 0.794 3.206 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.385 4.385 8 H 0.079 0.921 9 N -0.322 5.322 10 C 0.019 3.981 11 C -0.162 4.162 12 C 0.061 3.939 13 H 0.106 0.894 14 N -0.329 5.329 15 C 0.283 3.717 16 O -0.422 6.422 17 C 0.301 3.699 18 O -0.408 6.408 19 N -0.350 5.350 20 C -0.062 4.062 21 C 0.201 3.799 22 F -0.197 7.197 23 F -0.197 7.197 24 C 0.027 3.973 25 H 0.088 0.912 26 O -0.370 6.370 27 C 0.024 3.976 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.257 0.743 34 H 0.256 0.744 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.198 0.802 38 H 0.237 0.763 39 H 0.091 0.909 40 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 1.044 -22.076 12.885 25.582 hybrid contribution -0.137 1.654 -0.435 1.716 sum 0.907 -20.422 12.450 23.935 Atomic orbital electron populations 1.70151 1.06434 1.25912 1.55604 1.25689 0.95990 1.01125 1.01322 0.85309 0.78108 0.79782 0.77375 1.21632 1.21687 1.19771 1.19406 0.92625 0.85846 1.40583 0.92096 1.44108 1.35727 1.02099 1.50243 1.20970 0.97701 0.85833 0.93553 1.22114 0.97565 0.99053 0.97502 1.20965 0.98855 0.86583 0.87506 0.89398 1.45873 1.65196 1.05128 1.16653 1.20290 0.79005 0.84109 0.88342 1.90770 1.46338 1.78487 1.26646 1.19871 0.78574 0.83797 0.87704 1.90774 1.45472 1.78599 1.25998 1.45581 1.66953 1.05451 1.17059 1.22986 1.06567 0.85976 0.90690 1.22726 0.71496 0.98073 0.87568 1.93011 1.37006 1.97455 1.92224 1.93012 1.71588 1.94088 1.61026 1.22546 0.88943 0.92651 0.93119 0.91156 1.86329 1.41605 1.39678 1.69345 1.21320 0.88521 0.98305 0.89462 0.93989 0.92411 0.96496 0.91755 0.91751 0.74302 0.74438 0.86430 0.86341 0.80238 0.76333 0.90860 0.97296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.09 11.20 21.65 0.24 -52.85 16 2 C -0.05 -2.49 4.92 84.86 0.42 -2.07 16 3 Si 0.97 43.80 29.59 68.60 2.03 45.83 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.25 -13.68 9.58 84.03 0.81 -12.88 16 8 H 0.06 3.26 7.89 -2.91 -0.02 3.24 16 9 N -0.60 -29.28 2.93 -699.08 -2.05 -31.33 16 10 C 0.15 6.18 6.52 86.36 0.56 6.75 16 11 C -0.12 -4.45 5.51 30.67 0.17 -4.28 16 12 C 0.17 5.59 2.20 45.02 0.10 5.69 16 13 H 0.09 3.16 7.58 -2.39 -0.02 3.14 16 14 N -0.68 -19.75 5.04 -443.75 -2.24 -21.99 16 15 C 0.50 14.37 7.85 87.27 0.69 15.05 16 16 O -0.54 -17.94 16.14 -3.25 -0.05 -17.99 16 17 C 0.52 12.45 7.89 87.27 0.69 13.14 16 18 O -0.53 -14.16 16.48 -3.24 -0.05 -14.21 16 19 N -0.70 -12.48 5.41 -464.41 -2.51 -14.99 16 20 C 0.06 0.60 5.91 86.38 0.51 1.11 16 21 C 0.25 1.84 5.42 71.98 0.39 2.23 16 22 F -0.22 -2.85 17.20 44.97 0.77 -2.08 16 23 F -0.22 -2.89 17.20 44.97 0.77 -2.12 16 24 C 0.09 3.09 3.38 30.68 0.10 3.20 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 O -0.56 -19.08 12.08 -148.98 -1.80 -20.88 16 27 C 0.15 6.79 4.95 86.36 0.43 7.21 16 28 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 30 H 0.02 0.73 8.14 -2.38 -0.02 0.72 16 31 H 0.06 2.47 7.61 -2.39 -0.02 2.45 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.42 11.61 7.73 -92.71 -0.72 10.89 16 34 H 0.42 7.74 7.83 -92.71 -0.73 7.01 16 35 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.18 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.39 11.32 9.08 -74.06 -0.67 10.65 16 39 H 0.07 3.65 6.06 -2.39 -0.01 3.63 16 40 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -69.27 345.72 -1.02 -70.29 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.99 Total: 27.17 kcal Atomic # 6 Polarization: 30.30 SS G_CDS: 4.86 Total: 35.15 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -6.56 Total: -121.16 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -1.91 Total: -53.09 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 1.55 Total: -4.20 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -69.27 -1.02 -70.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099902136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.890 kcal (2) G-P(sol) polarization free energy of solvation -69.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds