Wall clock time and date at job start Fri Apr 10 2020 18:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00102 * 2 1 4 4 H 1.09004 * 110.78242 * 26.75104 * 3 2 1 5 5 C 1.54935 * 110.72499 * 263.50127 * 3 2 1 6 6 N 1.48534 * 103.22753 * 204.22710 * 5 3 2 7 7 C 1.46894 * 111.00172 * 159.72068 * 6 5 3 8 8 C 1.50706 * 109.46993 * 69.87463 * 7 6 5 9 9 O 1.21289 * 119.99668 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99650 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99589 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00177 * 0.02562 * 11 10 8 13 13 C 1.38957 * 120.00081 * 180.02562 * 11 10 8 14 14 N 1.31408 * 120.00179 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99744 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46968 * 90.00020 * 15 13 11 17 17 H 1.48504 * 109.46865 * 209.99736 * 15 13 11 18 18 H 1.48494 * 109.47149 * 329.99844 * 15 13 11 19 19 C 1.48125 * 105.82146 * 39.26437 * 6 5 3 20 20 C 1.53992 * 106.94669 * 334.59298 * 19 6 5 21 21 H 1.09002 * 110.31330 * 120.26921 * 20 19 6 22 22 N 1.46506 * 110.31014 * 242.33764 * 20 19 6 23 23 C 1.34777 * 119.99873 * 272.21077 * 22 20 19 24 24 O 1.21284 * 119.99754 * 359.97438 * 23 22 20 25 25 C 1.50696 * 120.00137 * 179.97438 * 23 22 20 26 26 F 1.39902 * 109.47135 * 54.99442 * 25 23 22 27 27 F 1.39896 * 109.47531 * 174.99585 * 25 23 22 28 28 H 1.09003 * 109.47247 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47129 * 299.99792 * 1 2 3 30 30 H 1.09005 * 109.46991 * 59.99834 * 1 2 3 31 31 H 1.08996 * 110.67021 * 322.66549 * 5 3 2 32 32 H 1.09005 * 110.66346 * 85.79381 * 5 3 2 33 33 H 1.09004 * 109.47386 * 189.87665 * 7 6 5 34 34 H 1.08997 * 109.47292 * 309.87844 * 7 6 5 35 35 H 0.97001 * 120.00529 * 0.02562 * 10 8 7 36 36 H 0.96994 * 120.00120 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.95361 * 215.28764 * 19 6 5 38 38 H 1.09000 * 109.99646 * 93.91901 * 19 6 5 39 39 H 0.96995 * 120.00050 * 91.93192 * 22 20 19 40 40 H 1.09001 * 109.47093 * 294.99951 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3362 2.0290 0.4587 5 6 2.3831 1.7396 -1.4398 6 7 3.4568 2.7432 -1.2248 7 6 4.2632 2.9199 -2.4399 8 6 3.4399 3.6171 -3.4922 9 8 2.2943 3.9358 -3.2531 10 7 3.9770 3.8873 -4.6984 11 6 3.2278 4.5211 -5.6558 12 1 2.2075 4.8042 -5.4433 13 6 3.7813 4.7993 -6.8997 14 7 3.0631 5.4063 -7.8175 15 14 5.5459 4.3090 -7.2674 16 1 5.5699 2.9388 -7.8396 17 1 6.1316 5.2632 -8.2430 18 1 6.3388 4.3352 -6.0122 19 6 4.2828 2.2190 -0.1126 20 6 3.3767 1.2958 0.7230 21 1 3.7850 0.2855 0.7468 22 7 3.2354 1.8185 2.0843 23 6 4.1305 1.4787 3.0329 24 8 5.0527 0.7400 2.7596 25 6 3.9855 2.0168 4.4330 26 9 2.7126 1.7052 4.9229 27 9 4.9568 1.4390 5.2576 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.7583 0.8915 -2.0124 32 1 1.5267 2.1934 -1.9387 33 1 5.1421 3.5217 -2.2084 34 1 4.5781 1.9450 -2.8120 35 1 4.8933 3.6327 -4.8894 36 1 3.4493 5.6001 -8.6859 37 1 4.6429 3.0428 0.5037 38 1 5.1254 1.6524 -0.5090 39 1 2.4999 2.4122 2.3019 40 1 4.1155 3.0989 4.4217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211740853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:11 Heat of formation + Delta-G solvation = -188.902199 kcal Electronic energy + Delta-G solvation = -27386.962356 eV Core-core repulsion = 22873.625297 eV Total energy + Delta-G solvation = -4513.337059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.133 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -49.57976 -47.60507 -40.57634 -39.21277 -38.22897 -36.78414 -34.89015 -33.93246 -31.75045 -31.03764 -29.05636 -27.95573 -27.05802 -25.98669 -24.05373 -21.99962 -21.53989 -20.80907 -19.45261 -18.94902 -18.35468 -18.18807 -17.97890 -17.13078 -16.55067 -16.04328 -15.74539 -15.56155 -15.15020 -14.95105 -14.79929 -14.51653 -14.38213 -14.08419 -13.93488 -13.88927 -13.64787 -13.18520 -13.10667 -12.84979 -12.58429 -12.50600 -12.24227 -12.02244 -11.91613 -11.76681 -11.46612 -11.17305 -10.89545 -10.62480 -10.44748 -10.01625 -9.96264 -9.61210 -9.54565 -8.71179 -8.25243 -8.18563 -6.34719 -3.86313 1.71624 2.11681 3.00266 3.04457 3.13011 3.29385 3.38384 3.62230 3.68678 3.97946 4.07498 4.10232 4.18195 4.32811 4.47754 4.71660 4.77845 5.02557 5.07996 5.16776 5.21161 5.25078 5.41315 5.50582 5.52442 5.56737 5.60423 5.75858 5.86527 5.94172 6.14740 6.69933 6.76823 6.89704 7.01567 7.42171 7.53982 8.09870 8.55919 8.91115 9.38421 9.78384 10.78302 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.002721 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.591760 B =10289.148349 C =11110.258848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.079 3.921 4 H 0.086 0.914 5 C 0.024 3.976 6 N -0.486 5.486 7 C 0.033 3.967 8 C 0.454 3.546 9 O -0.561 6.561 10 N -0.590 5.590 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.042 3.958 14 N -0.881 5.881 15 Si 0.879 3.121 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 C 0.026 3.974 20 C 0.136 3.864 21 H 0.111 0.889 22 N -0.700 5.700 23 C 0.474 3.526 24 O -0.499 6.499 25 C 0.258 3.742 26 F -0.188 7.188 27 F -0.176 7.176 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.370 0.630 36 H 0.274 0.726 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.408 0.592 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 -7.894 21.432 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.020 3.980 4 H 0.104 0.896 5 C -0.105 4.105 6 N -0.212 5.212 7 C -0.099 4.099 8 C 0.239 3.761 9 O -0.443 6.443 10 N -0.230 5.230 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.521 5.521 15 Si 0.706 3.294 16 H -0.196 1.196 17 H -0.201 1.201 18 H -0.195 1.195 19 C -0.103 4.103 20 C 0.031 3.969 21 H 0.129 0.871 22 N -0.353 5.353 23 C 0.255 3.745 24 O -0.373 6.373 25 C 0.201 3.799 26 F -0.169 7.169 27 F -0.157 7.157 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.244 0.756 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.791 -7.819 21.320 22.723 hybrid contribution 1.260 -0.577 -0.548 1.490 sum 2.051 -8.396 20.773 22.499 Atomic orbital electron populations 1.22850 0.80311 1.02957 1.00510 1.87904 1.20343 1.26499 1.94907 1.23275 0.93465 0.85242 0.96002 0.89637 1.23706 0.97583 0.93990 0.95196 1.64564 1.09823 1.42040 1.04741 1.22142 0.96628 1.00299 0.90822 1.19536 0.88466 0.85157 0.82928 1.90532 1.18271 1.55932 1.79555 1.42201 1.13739 1.54352 1.12669 1.19413 0.99158 1.33629 0.91158 0.86263 1.25038 0.98282 0.97178 0.95618 1.69614 1.36702 1.40430 1.05323 0.86679 0.84508 0.79369 0.78889 1.19627 1.20147 1.19464 1.23358 0.95465 0.97716 0.93768 1.21992 0.95869 0.99219 0.79800 0.87090 1.45954 1.29339 1.50087 1.09942 1.21067 0.83834 0.82466 0.87151 1.90838 1.31280 1.34004 1.81135 1.21660 0.72762 0.99559 0.85889 1.93065 1.39886 1.94914 1.89077 1.93068 1.62530 1.87195 1.72882 0.89484 0.93907 0.93222 0.92644 0.87235 0.88876 0.92710 0.79692 0.91577 0.89403 0.92205 0.75591 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.37 16 2 O -0.38 -4.43 10.44 -35.23 -0.37 -4.80 16 3 C 0.08 0.89 3.26 -24.87 -0.08 0.81 16 4 H 0.09 0.84 7.44 -51.93 -0.39 0.46 16 5 C 0.02 0.34 5.58 -1.90 -0.01 0.33 16 6 N -0.49 -7.11 4.96 -231.70 -1.15 -8.26 16 7 C 0.03 0.52 5.18 -4.98 -0.03 0.50 16 8 C 0.45 9.87 7.58 -10.98 -0.08 9.79 16 9 O -0.56 -14.24 14.42 5.55 0.08 -14.16 16 10 N -0.59 -13.66 5.09 -10.96 -0.06 -13.72 16 11 C -0.30 -8.43 10.16 -14.93 -0.15 -8.58 16 12 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 13 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 14 N -0.88 -25.37 13.96 55.50 0.77 -24.59 16 15 Si 0.88 19.07 27.74 -169.99 -4.71 14.35 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 19 C 0.03 0.30 6.49 -2.63 -0.02 0.28 16 20 C 0.14 1.46 3.08 -66.57 -0.20 1.25 16 21 H 0.11 1.36 7.53 -51.93 -0.39 0.97 16 22 N -0.70 -5.89 5.01 -52.49 -0.26 -6.16 16 23 C 0.47 4.57 7.63 -10.99 -0.08 4.49 16 24 O -0.50 -6.89 16.29 5.55 0.09 -6.80 16 25 C 0.26 1.79 5.72 36.00 0.21 2.00 16 26 F -0.19 -1.44 17.32 2.25 0.04 -1.40 16 27 F -0.18 -1.72 16.95 2.25 0.04 -1.68 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.32 8.11 -51.93 -0.42 -0.10 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.80 7.85 -51.93 -0.41 0.40 16 32 H 0.11 1.85 6.92 -51.93 -0.36 1.49 16 33 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 34 H 0.05 0.78 7.90 -51.93 -0.41 0.37 16 35 H 0.37 7.55 5.76 -40.82 -0.24 7.31 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.09 0.95 7.92 -51.93 -0.41 0.54 16 38 H 0.06 0.68 7.78 -51.93 -0.40 0.27 16 39 H 0.41 2.38 8.37 -40.82 -0.34 2.04 16 40 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 347.77 15.07 5.24 5.24 Total: -1.00 -34.76 347.77 -4.75 -39.51 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.01 Total: 9.20 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 0.55 Total: 13.26 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.69 Total: -52.72 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.20 Total: -25.76 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.08 Total: -3.09 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.76 -4.75 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211740853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.392 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds