Wall clock time and date at job start Fri Apr 10 2020 18:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00102 * 2 1 4 4 H 1.09004 * 110.78242 * 26.75104 * 3 2 1 5 5 C 1.54935 * 110.72499 * 263.50127 * 3 2 1 6 6 N 1.48534 * 103.22753 * 204.22710 * 5 3 2 7 7 C 1.46894 * 111.00172 * 159.72068 * 6 5 3 8 8 C 1.50706 * 109.46993 * 69.87463 * 7 6 5 9 9 O 1.21289 * 119.99668 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99650 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99589 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00177 * 0.02562 * 11 10 8 13 13 C 1.38957 * 120.00081 * 180.02562 * 11 10 8 14 14 N 1.31408 * 120.00179 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99744 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46968 * 90.00020 * 15 13 11 17 17 H 1.48504 * 109.46865 * 209.99736 * 15 13 11 18 18 H 1.48494 * 109.47149 * 329.99844 * 15 13 11 19 19 C 1.48125 * 105.82146 * 39.26437 * 6 5 3 20 20 C 1.53992 * 106.94669 * 334.59298 * 19 6 5 21 21 H 1.09002 * 110.31330 * 120.26921 * 20 19 6 22 22 N 1.46506 * 110.31014 * 242.33764 * 20 19 6 23 23 C 1.34777 * 119.99873 * 272.21077 * 22 20 19 24 24 O 1.21284 * 119.99754 * 359.97438 * 23 22 20 25 25 C 1.50696 * 120.00137 * 179.97438 * 23 22 20 26 26 F 1.39902 * 109.47135 * 54.99442 * 25 23 22 27 27 F 1.39896 * 109.47531 * 174.99585 * 25 23 22 28 28 H 1.09003 * 109.47247 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47129 * 299.99792 * 1 2 3 30 30 H 1.09005 * 109.46991 * 59.99834 * 1 2 3 31 31 H 1.08996 * 110.67021 * 322.66549 * 5 3 2 32 32 H 1.09005 * 110.66346 * 85.79381 * 5 3 2 33 33 H 1.09004 * 109.47386 * 189.87665 * 7 6 5 34 34 H 1.08997 * 109.47292 * 309.87844 * 7 6 5 35 35 H 0.97001 * 120.00529 * 0.02562 * 10 8 7 36 36 H 0.96994 * 120.00120 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.95361 * 215.28764 * 19 6 5 38 38 H 1.09000 * 109.99646 * 93.91901 * 19 6 5 39 39 H 0.96995 * 120.00050 * 91.93192 * 22 20 19 40 40 H 1.09001 * 109.47093 * 294.99951 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3362 2.0290 0.4587 5 6 2.3831 1.7396 -1.4398 6 7 3.4568 2.7432 -1.2248 7 6 4.2632 2.9199 -2.4399 8 6 3.4399 3.6171 -3.4922 9 8 2.2943 3.9358 -3.2531 10 7 3.9770 3.8873 -4.6984 11 6 3.2278 4.5211 -5.6558 12 1 2.2075 4.8042 -5.4433 13 6 3.7813 4.7993 -6.8997 14 7 3.0631 5.4063 -7.8175 15 14 5.5459 4.3090 -7.2674 16 1 5.5699 2.9388 -7.8396 17 1 6.1316 5.2632 -8.2430 18 1 6.3388 4.3352 -6.0122 19 6 4.2828 2.2190 -0.1126 20 6 3.3767 1.2958 0.7230 21 1 3.7850 0.2855 0.7468 22 7 3.2354 1.8185 2.0843 23 6 4.1305 1.4787 3.0329 24 8 5.0527 0.7400 2.7596 25 6 3.9855 2.0168 4.4330 26 9 2.7126 1.7052 4.9229 27 9 4.9568 1.4390 5.2576 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.7583 0.8915 -2.0124 32 1 1.5267 2.1934 -1.9387 33 1 5.1421 3.5217 -2.2084 34 1 4.5781 1.9450 -2.8120 35 1 4.8933 3.6327 -4.8894 36 1 3.4493 5.6001 -8.6859 37 1 4.6429 3.0428 0.5037 38 1 5.1254 1.6524 -0.5090 39 1 2.4999 2.4122 2.3019 40 1 4.1155 3.0989 4.4217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211740853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:10 Heat of formation + Delta-G solvation = -219.503031 kcal Electronic energy + Delta-G solvation = -27388.289307 eV Core-core repulsion = 22873.625297 eV Total energy + Delta-G solvation = -4514.664011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.17298 -48.21425 -41.49495 -40.42787 -39.60055 -37.82459 -36.07990 -35.61409 -33.75182 -32.10180 -29.92836 -28.99968 -27.99743 -27.15610 -25.63258 -22.96700 -22.44039 -21.70621 -21.26013 -20.27181 -19.58856 -18.75722 -18.67938 -18.07482 -17.74527 -17.28908 -16.79015 -16.65246 -16.54634 -15.99071 -15.78462 -15.64134 -15.39994 -15.11767 -15.01283 -14.83488 -14.55008 -14.50281 -14.31768 -14.21411 -13.96029 -13.61208 -13.29615 -13.14016 -13.00322 -12.87576 -12.66132 -12.42377 -12.40628 -11.98250 -11.88384 -11.48581 -11.21677 -10.80902 -10.50638 -10.30851 -10.23318 -9.46516 -8.40726 -6.01087 0.98289 1.30699 1.35438 1.42694 1.44350 1.96161 2.23047 2.35622 2.71345 2.90097 3.06129 3.15105 3.23163 3.41641 3.50872 3.62949 3.77237 3.85312 4.08635 4.15766 4.22592 4.30988 4.42166 4.46443 4.52052 4.58772 4.64031 4.73374 4.84052 4.94201 5.13579 5.51812 5.65630 5.78168 5.97466 6.06927 6.13631 6.59983 6.74639 6.89116 7.40585 7.96990 8.76784 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.002721 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.591760 B =10289.148349 C =11110.258848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.090 3.910 4 H 0.100 0.900 5 C 0.023 3.977 6 N -0.501 5.501 7 C 0.043 3.957 8 C 0.454 3.546 9 O -0.603 6.603 10 N -0.593 5.593 11 C -0.325 4.325 12 H 0.058 0.942 13 C -0.015 4.015 14 N -0.935 5.935 15 Si 0.962 3.038 16 H -0.259 1.259 17 H -0.276 1.276 18 H -0.231 1.231 19 C 0.032 3.968 20 C 0.144 3.856 21 H 0.098 0.902 22 N -0.688 5.688 23 C 0.473 3.527 24 O -0.545 6.545 25 C 0.264 3.736 26 F -0.191 7.191 27 F -0.193 7.193 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.389 0.611 36 H 0.279 0.721 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.423 0.577 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 -8.520 23.382 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C 0.031 3.969 4 H 0.118 0.882 5 C -0.106 4.106 6 N -0.227 5.227 7 C -0.089 4.089 8 C 0.242 3.758 9 O -0.487 6.487 10 N -0.235 5.235 11 C -0.454 4.454 12 H 0.076 0.924 13 C -0.213 4.213 14 N -0.576 5.576 15 Si 0.782 3.218 16 H -0.184 1.184 17 H -0.201 1.201 18 H -0.154 1.154 19 C -0.097 4.097 20 C 0.038 3.962 21 H 0.116 0.884 22 N -0.341 5.341 23 C 0.256 3.744 24 O -0.422 6.422 25 C 0.208 3.792 26 F -0.172 7.172 27 F -0.174 7.174 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.142 0.858 34 H 0.099 0.901 35 H 0.224 0.776 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.262 0.738 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.142 -8.441 23.316 24.995 hybrid contribution 0.327 -0.381 -1.107 1.216 sum 3.469 -8.822 22.209 24.148 Atomic orbital electron populations 1.23031 0.79016 1.04137 1.01017 1.87888 1.21841 1.26657 1.94853 1.23143 0.94151 0.85551 0.94103 0.88189 1.23573 0.96541 0.93431 0.97007 1.64490 1.10412 1.42819 1.04946 1.22083 0.96156 1.01178 0.89465 1.20734 0.88354 0.83440 0.83303 1.90521 1.20645 1.57119 1.80419 1.42038 1.14283 1.54733 1.12450 1.18990 0.97641 1.35536 0.93235 0.92432 1.26074 1.04292 0.96411 0.94539 1.69794 1.39670 1.41979 1.06113 0.85406 0.77130 0.79122 0.80145 1.18367 1.20126 1.15401 1.23385 0.95260 0.98303 0.92733 1.21737 0.95082 0.98536 0.80797 0.88433 1.45819 1.29531 1.49799 1.08941 1.21588 0.82986 0.81531 0.88280 1.90822 1.33185 1.36032 1.82121 1.21990 0.72019 1.01731 0.83500 1.93063 1.40108 1.95146 1.88920 1.93034 1.63369 1.87792 1.73237 0.88074 0.92069 0.94033 0.93195 0.90695 0.85816 0.90146 0.77591 0.91197 0.88080 0.91359 0.73844 0.78975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.85 113.37 1.23 1.63 16 2 O -0.39 -8.82 10.44 -148.98 -1.56 -10.37 16 3 C 0.09 1.91 3.26 31.80 0.10 2.01 16 4 H 0.10 1.81 7.44 -2.38 -0.02 1.79 16 5 C 0.02 0.66 5.58 86.65 0.48 1.14 16 6 N -0.50 -13.79 4.96 -886.96 -4.40 -18.19 16 7 C 0.04 1.25 5.18 85.56 0.44 1.69 16 8 C 0.45 19.72 7.58 87.66 0.66 20.38 16 9 O -0.60 -31.79 14.42 -3.06 -0.04 -31.83 16 10 N -0.59 -27.26 5.09 -306.98 -1.56 -28.83 16 11 C -0.32 -18.66 10.16 84.04 0.85 -17.80 16 12 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 13 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 14 N -0.93 -55.81 13.96 21.66 0.30 -55.51 16 15 Si 0.96 38.33 27.74 68.60 1.90 40.24 16 16 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 17 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 18 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 19 C 0.03 0.65 6.49 86.40 0.56 1.21 16 20 C 0.14 2.80 3.08 45.87 0.14 2.95 16 21 H 0.10 2.25 7.53 -2.39 -0.02 2.24 16 22 N -0.69 -9.77 5.01 -438.36 -2.20 -11.96 16 23 C 0.47 8.03 7.63 87.66 0.67 8.70 16 24 O -0.55 -14.28 16.29 -3.04 -0.05 -14.33 16 25 C 0.26 2.86 5.72 71.23 0.41 3.27 16 26 F -0.19 -2.39 17.32 44.97 0.78 -1.61 16 27 F -0.19 -3.41 16.95 44.97 0.76 -2.64 16 28 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 0.80 8.11 -2.39 -0.02 0.78 16 30 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.05 1.44 7.85 -2.39 -0.02 1.42 16 32 H 0.07 2.64 6.92 -2.38 -0.02 2.63 16 33 H 0.12 2.95 8.11 -2.39 -0.02 2.93 16 34 H 0.08 2.01 7.90 -2.39 -0.02 1.99 16 35 H 0.39 14.82 5.76 -92.71 -0.53 14.29 16 36 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.10 1.83 7.92 -2.39 -0.02 1.81 16 38 H 0.07 1.32 7.78 -2.39 -0.02 1.30 16 39 H 0.42 3.60 8.37 -92.71 -0.78 2.82 16 40 H 0.19 0.08 8.14 -2.39 -0.02 0.06 16 Total: -1.00 -81.85 347.77 -0.30 -82.15 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.26 Total: 28.05 kcal Atomic # 6 Polarization: 18.82 SS G_CDS: 6.03 Total: 24.85 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -7.86 Total: -114.49 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -1.65 Total: -56.53 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 1.54 Total: -4.26 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.24 kcal Total: -81.85 -0.30 -82.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211740853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.351 kcal (2) G-P(sol) polarization free energy of solvation -81.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds