Wall clock time and date at job start Fri Apr 10 2020 18:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00146 * 2 1 4 4 C 1.52997 * 109.47214 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47203 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47072 * 176.39079 * 5 4 3 7 7 C 1.46905 * 110.99823 * 163.92620 * 6 5 4 8 8 C 1.53000 * 109.47231 * 284.24506 * 7 6 5 9 9 H 1.08993 * 109.46992 * 53.57010 * 8 7 6 10 10 O 1.42897 * 109.46856 * 293.57047 * 8 7 6 11 11 C 1.50702 * 109.46944 * 173.57455 * 8 7 6 12 12 H 1.08004 * 119.99749 * 359.97438 * 11 8 7 13 13 C 1.37872 * 120.00007 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00319 * 180.02562 * 13 11 8 15 15 Si 1.86802 * 120.00018 * 359.97438 * 13 11 8 16 16 H 1.48498 * 109.47178 * 90.00010 * 15 13 11 17 17 H 1.48499 * 109.47114 * 210.00474 * 15 13 11 18 18 H 1.48509 * 109.46841 * 330.00119 * 15 13 11 19 19 C 1.46894 * 111.00091 * 287.88197 * 6 5 4 20 20 H 1.09005 * 110.01331 * 46.12884 * 19 6 5 21 21 C 1.53881 * 110.03032 * 284.70258 * 19 6 5 22 22 C 1.54156 * 108.70629 * 193.52848 * 21 19 6 23 23 S 1.82912 * 105.08894 * 27.90662 * 22 21 19 24 24 O 1.42094 * 109.35597 * 244.47938 * 23 22 21 25 25 O 1.42101 * 109.47484 * 111.30641 * 23 22 21 26 26 C 1.55049 * 110.02937 * 167.51249 * 19 6 5 27 27 H 1.09004 * 109.47155 * 60.00005 * 1 2 3 28 28 H 1.08998 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46987 * 299.99864 * 1 2 3 30 30 H 1.09005 * 109.47219 * 59.99897 * 3 2 1 31 31 H 1.08993 * 109.47186 * 300.00226 * 3 2 1 32 32 H 1.09004 * 109.47316 * 60.00319 * 4 3 2 33 33 H 1.09000 * 109.47540 * 300.00064 * 4 3 2 34 34 H 1.08991 * 109.46965 * 56.38653 * 5 4 3 35 35 H 1.09006 * 109.46926 * 296.39017 * 5 4 3 36 36 H 1.09004 * 109.46907 * 44.24594 * 7 6 5 37 37 H 1.09001 * 109.47042 * 164.24216 * 7 6 5 38 38 H 0.96697 * 114.00697 * 304.89363 * 10 8 7 39 39 H 0.96993 * 120.00169 * 179.97438 * 14 13 11 40 40 H 1.09003 * 109.64073 * 313.38226 * 21 19 6 41 41 H 1.09000 * 109.64542 * 73.67090 * 21 19 6 42 42 H 1.08997 * 110.32074 * 269.00349 * 22 21 19 43 43 H 1.08999 * 110.32066 * 146.81449 * 22 21 19 44 44 H 1.09008 * 110.78510 * 279.99386 * 26 19 6 45 45 H 1.08991 * 110.79064 * 43.26206 * 26 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6197 2.4673 0.0866 7 6 6.2702 3.7301 -0.2883 8 6 6.2239 3.8960 -1.8085 9 1 5.1951 3.7950 -2.1539 10 8 7.0332 2.8907 -2.4222 11 6 6.7475 5.2591 -2.1812 12 1 7.0797 5.9391 -1.4107 13 6 6.8016 5.6383 -3.5057 14 7 7.2590 6.8277 -3.8310 15 14 6.2265 4.4623 -4.8382 16 1 4.7792 4.6740 -5.0943 17 1 6.9921 4.7147 -6.0853 18 1 6.4511 3.0631 -4.3941 19 6 6.0355 2.0391 1.4288 20 1 5.4186 1.2044 1.7618 21 6 5.9149 3.2122 2.4173 22 6 6.6657 2.8461 3.7129 23 16 7.9765 1.6821 3.1909 24 8 7.7387 0.4106 3.7790 25 8 9.2466 2.3027 3.3362 26 6 7.5291 1.6230 1.4145 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.8567 0.6438 -0.8909 33 1 3.8575 0.6435 0.8891 34 1 3.7862 3.1450 0.8563 35 1 3.8879 3.1006 -0.9202 36 1 5.7478 4.5620 0.1841 37 1 7.3081 3.7168 0.0444 38 1 7.9463 2.8726 -2.1044 39 1 7.2974 7.0943 -4.7628 40 1 6.3554 4.1076 1.9788 41 1 4.8641 3.3955 2.6419 42 1 5.9898 2.3633 4.4186 43 1 7.1067 3.7373 4.1595 44 1 7.6457 0.6138 1.0194 45 1 8.1230 2.3330 0.8391 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333137819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:29 Heat of formation + Delta-G solvation = -153.293737 kcal Electronic energy + Delta-G solvation = -26585.101438 eV Core-core repulsion = 22730.689208 eV Total energy + Delta-G solvation = -3854.412230 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.34787 -37.97571 -37.11849 -36.14234 -35.91459 -34.28316 -32.28915 -31.94609 -29.91248 -28.58470 -26.96741 -25.34962 -24.98812 -23.53291 -21.90252 -21.07544 -19.43605 -18.92938 -17.45566 -17.07436 -16.77418 -16.38520 -16.28957 -15.74348 -15.38945 -15.21358 -14.89196 -14.77722 -14.58479 -14.45351 -13.84788 -13.73084 -13.58940 -13.08350 -12.74855 -12.58421 -12.39122 -12.25706 -12.10758 -12.08200 -11.94840 -11.79413 -11.49032 -11.40019 -11.16131 -10.98365 -10.91852 -10.78954 -10.60297 -10.43557 -10.34550 -9.98683 -9.81247 -9.11980 -8.66934 -8.38651 -8.00980 -6.17937 -4.30244 -0.06180 2.39240 3.35441 3.46015 3.47437 3.48494 3.73617 3.83429 4.07384 4.27945 4.41508 4.50048 4.58573 4.64872 4.75531 4.92305 4.98608 5.12782 5.16858 5.19216 5.22938 5.28859 5.33164 5.38764 5.42053 5.45436 5.49152 5.64703 5.67574 5.79381 5.84148 5.86796 6.12113 6.12868 6.26479 6.43542 6.98622 7.06015 7.13706 7.35734 7.58339 8.23123 8.76801 9.03048 9.47206 10.92481 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.007705 B = 0.005375 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.054538 B = 5208.533220 C = 8147.676210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.061 3.939 4 C -0.116 4.116 5 C 0.053 3.947 6 N -0.507 5.507 7 C 0.029 3.971 8 C 0.205 3.795 9 H 0.053 0.947 10 O -0.569 6.569 11 C -0.569 4.569 12 H 0.071 0.929 13 C 0.086 3.914 14 N -0.892 5.892 15 Si 0.870 3.130 16 H -0.289 1.289 17 H -0.296 1.296 18 H -0.214 1.214 19 C 0.083 3.917 20 H 0.104 0.896 21 C -0.156 4.156 22 C -0.588 4.588 23 S 2.384 3.616 24 O -0.942 6.942 25 O -0.940 6.940 26 C -0.574 4.574 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.351 0.649 39 H 0.265 0.735 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.752 -10.223 13.083 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.016 4.016 4 C -0.153 4.153 5 C -0.075 4.075 6 N -0.230 5.230 7 C -0.098 4.098 8 C 0.147 3.853 9 H 0.071 0.929 10 O -0.374 6.374 11 C -0.606 4.606 12 H 0.089 0.911 13 C -0.119 4.119 14 N -0.529 5.529 15 Si 0.697 3.303 16 H -0.216 1.216 17 H -0.223 1.223 18 H -0.137 1.137 19 C -0.028 4.028 20 H 0.121 0.879 21 C -0.196 4.196 22 C -0.718 4.718 23 S 2.567 3.433 24 O -0.939 6.939 25 O -0.937 6.937 26 C -0.705 4.705 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.197 0.803 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.152 0.848 43 H 0.155 0.845 44 H 0.162 0.838 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.277 -11.212 12.817 18.934 hybrid contribution -0.952 1.266 -0.267 1.606 sum -9.229 -9.947 12.550 18.483 Atomic orbital electron populations 1.22723 0.81240 1.02593 0.99919 1.87875 1.19522 1.28279 1.95421 1.22524 0.94440 0.84440 1.00180 1.21513 0.91914 0.97794 1.04121 1.22077 0.87477 0.96001 1.01979 1.62172 1.06392 1.33234 1.21170 1.23063 0.98516 0.87623 1.00564 1.19705 0.92248 0.87304 0.86083 0.92892 1.86722 1.24484 1.58852 1.67357 1.21494 1.45787 0.99382 0.93986 0.91106 1.24962 0.93048 0.94711 0.99151 1.69952 1.44814 1.19653 1.18500 0.87034 0.77769 0.85619 0.79921 1.21579 1.22267 1.13677 1.22429 0.93164 0.97081 0.90145 0.87857 1.22766 1.02940 1.01656 0.92237 1.30403 1.17531 1.17061 1.06779 1.09169 0.77279 0.76831 0.80011 1.93608 1.86475 1.38622 1.75174 1.93622 1.37315 1.77436 1.85303 1.30765 1.05156 1.12169 1.22416 0.94053 0.89761 0.94249 0.93562 0.93033 0.89873 0.91282 0.94520 0.89529 0.93769 0.90783 0.80318 0.92544 0.88655 0.89121 0.84808 0.84541 0.83758 0.83615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.65 10.70 -35.23 -0.38 -5.03 16 3 C 0.06 0.66 5.94 37.16 0.22 0.88 16 4 C -0.12 -1.34 5.70 -26.73 -0.15 -1.50 16 5 C 0.05 0.66 4.71 -3.82 -0.02 0.64 16 6 N -0.51 -6.90 4.31 -224.80 -0.97 -7.87 16 7 C 0.03 0.48 2.98 -3.82 -0.01 0.47 16 8 C 0.20 4.33 2.40 -27.88 -0.07 4.26 16 9 H 0.05 1.17 6.05 -51.93 -0.31 0.86 16 10 O -0.57 -12.10 10.12 -35.23 -0.36 -12.46 16 11 C -0.57 -14.81 9.37 -34.44 -0.32 -15.14 16 12 H 0.07 1.99 7.99 -52.48 -0.42 1.57 16 13 C 0.09 2.39 5.47 -17.82 -0.10 2.29 16 14 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 15 Si 0.87 21.22 26.99 -169.99 -4.59 16.64 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 18 H -0.21 -5.13 5.31 56.52 0.30 -4.83 16 19 C 0.08 0.88 2.49 -66.17 -0.16 0.72 16 20 H 0.10 0.96 6.33 -51.93 -0.33 0.63 16 21 C -0.16 -1.44 5.12 -25.67 -0.13 -1.57 16 22 C -0.59 -4.59 7.26 37.76 0.27 -4.31 16 23 S 2.38 24.63 6.10 -107.50 -0.66 23.98 16 24 O -0.94 -12.48 18.14 -57.73 -1.05 -13.52 16 25 O -0.94 -13.26 18.15 -57.73 -1.05 -14.31 16 26 C -0.57 -5.88 6.74 38.24 0.26 -5.62 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.75 6.48 -51.93 -0.34 0.41 16 34 H 0.04 0.39 6.88 -51.93 -0.36 0.04 16 35 H 0.09 1.23 6.47 -51.93 -0.34 0.90 16 36 H 0.04 0.72 7.11 -51.93 -0.37 0.35 16 37 H 0.07 1.15 5.90 -51.93 -0.31 0.84 16 38 H 0.35 6.57 9.02 45.56 0.41 6.98 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.09 0.97 6.00 -51.93 -0.31 0.66 16 41 H 0.09 0.74 7.31 -51.93 -0.38 0.37 16 42 H 0.13 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.14 1.34 8.14 -51.92 -0.42 0.92 16 45 H 0.15 1.56 6.24 -51.93 -0.32 1.23 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -35.91 360.56 -8.35 -44.26 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.41 Total: 6.08 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 0.90 Total: -17.50 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: -0.20 Total: -33.57 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -2.83 Total: -45.32 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.59 Total: 16.64 kcal Atomic # 16 Polarization: 24.63 SS G_CDS: -0.66 Total: 23.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.91 -8.35 -44.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333137819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.035 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds