Wall clock time and date at job start Fri Apr 10 2020 18:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00146 * 2 1 4 4 C 1.52997 * 109.47214 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47203 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47072 * 176.39079 * 5 4 3 7 7 C 1.46905 * 110.99823 * 163.92620 * 6 5 4 8 8 C 1.53000 * 109.47231 * 284.24506 * 7 6 5 9 9 H 1.08993 * 109.46992 * 53.57010 * 8 7 6 10 10 O 1.42897 * 109.46856 * 293.57047 * 8 7 6 11 11 C 1.50702 * 109.46944 * 173.57455 * 8 7 6 12 12 H 1.08004 * 119.99749 * 359.97438 * 11 8 7 13 13 C 1.37872 * 120.00007 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00319 * 180.02562 * 13 11 8 15 15 Si 1.86802 * 120.00018 * 359.97438 * 13 11 8 16 16 H 1.48498 * 109.47178 * 90.00010 * 15 13 11 17 17 H 1.48499 * 109.47114 * 210.00474 * 15 13 11 18 18 H 1.48509 * 109.46841 * 330.00119 * 15 13 11 19 19 C 1.46894 * 111.00091 * 287.88197 * 6 5 4 20 20 H 1.09005 * 110.01331 * 46.12884 * 19 6 5 21 21 C 1.53881 * 110.03032 * 284.70258 * 19 6 5 22 22 C 1.54156 * 108.70629 * 193.52848 * 21 19 6 23 23 S 1.82912 * 105.08894 * 27.90662 * 22 21 19 24 24 O 1.42094 * 109.35597 * 244.47938 * 23 22 21 25 25 O 1.42101 * 109.47484 * 111.30641 * 23 22 21 26 26 C 1.55049 * 110.02937 * 167.51249 * 19 6 5 27 27 H 1.09004 * 109.47155 * 60.00005 * 1 2 3 28 28 H 1.08998 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46987 * 299.99864 * 1 2 3 30 30 H 1.09005 * 109.47219 * 59.99897 * 3 2 1 31 31 H 1.08993 * 109.47186 * 300.00226 * 3 2 1 32 32 H 1.09004 * 109.47316 * 60.00319 * 4 3 2 33 33 H 1.09000 * 109.47540 * 300.00064 * 4 3 2 34 34 H 1.08991 * 109.46965 * 56.38653 * 5 4 3 35 35 H 1.09006 * 109.46926 * 296.39017 * 5 4 3 36 36 H 1.09004 * 109.46907 * 44.24594 * 7 6 5 37 37 H 1.09001 * 109.47042 * 164.24216 * 7 6 5 38 38 H 0.96697 * 114.00697 * 304.89363 * 10 8 7 39 39 H 0.96993 * 120.00169 * 179.97438 * 14 13 11 40 40 H 1.09003 * 109.64073 * 313.38226 * 21 19 6 41 41 H 1.09000 * 109.64542 * 73.67090 * 21 19 6 42 42 H 1.08997 * 110.32074 * 269.00349 * 22 21 19 43 43 H 1.08999 * 110.32066 * 146.81449 * 22 21 19 44 44 H 1.09008 * 110.78510 * 279.99386 * 26 19 6 45 45 H 1.08991 * 110.79064 * 43.26206 * 26 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6197 2.4673 0.0866 7 6 6.2702 3.7301 -0.2883 8 6 6.2239 3.8960 -1.8085 9 1 5.1951 3.7950 -2.1539 10 8 7.0332 2.8907 -2.4222 11 6 6.7475 5.2591 -2.1812 12 1 7.0797 5.9391 -1.4107 13 6 6.8016 5.6383 -3.5057 14 7 7.2590 6.8277 -3.8310 15 14 6.2265 4.4623 -4.8382 16 1 4.7792 4.6740 -5.0943 17 1 6.9921 4.7147 -6.0853 18 1 6.4511 3.0631 -4.3941 19 6 6.0355 2.0391 1.4288 20 1 5.4186 1.2044 1.7618 21 6 5.9149 3.2122 2.4173 22 6 6.6657 2.8461 3.7129 23 16 7.9765 1.6821 3.1909 24 8 7.7387 0.4106 3.7790 25 8 9.2466 2.3027 3.3362 26 6 7.5291 1.6230 1.4145 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.8567 0.6438 -0.8909 33 1 3.8575 0.6435 0.8891 34 1 3.7862 3.1450 0.8563 35 1 3.8879 3.1006 -0.9202 36 1 5.7478 4.5620 0.1841 37 1 7.3081 3.7168 0.0444 38 1 7.9463 2.8726 -2.1044 39 1 7.2974 7.0943 -4.7628 40 1 6.3554 4.1076 1.9788 41 1 4.8641 3.3955 2.6419 42 1 5.9898 2.3633 4.4186 43 1 7.1067 3.7373 4.1595 44 1 7.6457 0.6138 1.0194 45 1 8.1230 2.3330 0.8391 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333137819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:28 Heat of formation + Delta-G solvation = -184.824758 kcal Electronic energy + Delta-G solvation = -26586.468725 eV Core-core repulsion = 22730.689208 eV Total energy + Delta-G solvation = -3855.779518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.37119 -38.78499 -38.06929 -37.54114 -37.04189 -35.18644 -34.37333 -32.95785 -30.89719 -29.93763 -27.88074 -26.72351 -25.78361 -24.53886 -22.91467 -22.49417 -20.53153 -19.77933 -19.23238 -18.02092 -17.70757 -17.22107 -17.09715 -16.78942 -16.67579 -16.43093 -16.17695 -15.99357 -15.71156 -15.40549 -15.08709 -14.78352 -14.66538 -14.51468 -14.07218 -13.60369 -13.32644 -13.26210 -13.17221 -13.07694 -12.95381 -12.85744 -12.77841 -12.60425 -12.41350 -12.14996 -12.09299 -11.94506 -11.79521 -11.64834 -11.37530 -11.23863 -10.97981 -10.76908 -10.57969 -10.10612 -9.12894 -8.32531 -6.45816 -0.87478 1.39705 1.46981 1.60707 1.77588 2.45881 2.62985 2.68062 3.03130 3.07238 3.19024 3.48522 3.60480 3.80082 3.93347 3.98966 4.06482 4.15492 4.23025 4.26817 4.37293 4.47174 4.54055 4.55744 4.59219 4.60209 4.66210 4.76482 4.78866 4.85883 4.88167 4.93699 5.04881 5.11308 5.20633 5.31476 5.50671 5.53884 6.08298 6.14379 6.18906 6.28733 6.67845 7.27578 7.44391 8.81465 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.007705 B = 0.005375 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.054538 B = 5208.533220 C = 8147.676210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.061 3.939 4 C -0.108 4.108 5 C 0.052 3.948 6 N -0.517 5.517 7 C 0.043 3.957 8 C 0.208 3.792 9 H 0.048 0.952 10 O -0.576 6.576 11 C -0.562 4.562 12 H 0.041 0.959 13 C 0.031 3.969 14 N -0.941 5.941 15 Si 0.932 3.068 16 H -0.287 1.287 17 H -0.303 1.303 18 H -0.205 1.205 19 C 0.079 3.921 20 H 0.124 0.876 21 C -0.157 4.157 22 C -0.562 4.562 23 S 2.395 3.605 24 O -0.973 6.973 25 O -0.984 6.984 26 C -0.575 4.575 27 H 0.045 0.955 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.363 0.637 39 H 0.265 0.735 40 H 0.085 0.915 41 H 0.111 0.889 42 H 0.162 0.838 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.529 -11.499 14.596 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.015 4.015 4 C -0.146 4.146 5 C -0.076 4.076 6 N -0.239 5.239 7 C -0.085 4.085 8 C 0.150 3.850 9 H 0.066 0.934 10 O -0.382 6.382 11 C -0.600 4.600 12 H 0.059 0.941 13 C -0.169 4.169 14 N -0.581 5.581 15 Si 0.757 3.243 16 H -0.213 1.213 17 H -0.230 1.230 18 H -0.127 1.127 19 C -0.032 4.032 20 H 0.142 0.858 21 C -0.197 4.197 22 C -0.695 4.695 23 S 2.583 3.417 24 O -0.970 6.970 25 O -0.981 6.981 26 C -0.706 4.706 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.210 0.790 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.130 0.870 42 H 0.180 0.820 43 H 0.171 0.829 44 H 0.170 0.830 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.035 -12.528 14.347 21.529 hybrid contribution -0.442 1.678 -0.677 1.863 sum -10.478 -10.850 13.671 20.357 Atomic orbital electron populations 1.22912 0.79635 1.03725 1.00786 1.87830 1.21378 1.28877 1.95608 1.22525 0.93694 0.84351 1.00974 1.21408 0.92701 0.96919 1.03529 1.22086 0.86828 0.96683 1.01966 1.61999 1.07043 1.31378 1.23519 1.22683 0.99496 0.89327 0.96985 1.19542 0.91392 0.84579 0.89499 0.93450 1.86647 1.25443 1.58197 1.67899 1.21907 1.44008 1.01143 0.92951 0.94091 1.25766 0.93589 0.95904 1.01596 1.70080 1.47458 1.21693 1.18831 0.86083 0.77085 0.84031 0.77068 1.21337 1.22994 1.12706 1.22598 0.93370 0.98265 0.88953 0.85842 1.22773 1.04308 1.00397 0.92235 1.30240 1.15963 1.16503 1.06758 1.08665 0.77107 0.76411 0.79565 1.93563 1.86913 1.40745 1.75743 1.93564 1.40598 1.78019 1.85876 1.30739 1.05092 1.12549 1.22227 0.93670 0.88624 0.92868 0.91627 0.93368 0.92103 0.90187 0.92130 0.91638 0.93662 0.90174 0.78987 0.92666 0.89664 0.87043 0.82012 0.82923 0.83020 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.05 10.70 -148.98 -1.59 -10.64 16 3 C 0.06 1.17 5.94 71.98 0.43 1.60 16 4 C -0.11 -2.26 5.70 30.59 0.17 -2.08 16 5 C 0.05 1.18 4.71 86.30 0.41 1.59 16 6 N -0.52 -12.92 4.31 -865.14 -3.73 -16.65 16 7 C 0.04 1.34 2.98 86.30 0.26 1.59 16 8 C 0.21 8.64 2.40 29.85 0.07 8.72 16 9 H 0.05 2.05 6.05 -2.39 -0.01 2.04 16 10 O -0.58 -23.70 10.12 -148.98 -1.51 -25.20 16 11 C -0.56 -29.53 9.37 25.60 0.24 -29.29 16 12 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 13 C 0.03 1.74 5.47 84.65 0.46 2.20 16 14 N -0.94 -57.13 13.96 21.45 0.30 -56.83 16 15 Si 0.93 44.28 26.99 68.60 1.85 46.14 16 16 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 18 H -0.21 -9.35 5.31 99.48 0.53 -8.82 16 19 C 0.08 1.44 2.49 45.91 0.11 1.56 16 20 H 0.12 1.82 6.33 -2.38 -0.02 1.81 16 21 C -0.16 -2.32 5.12 31.28 0.16 -2.16 16 22 C -0.56 -6.68 7.26 72.37 0.53 -6.15 16 23 S 2.39 45.76 6.10 -56.49 -0.34 45.41 16 24 O -0.97 -24.36 18.14 -127.47 -2.31 -26.68 16 25 O -0.98 -27.32 18.15 -127.47 -2.31 -29.64 16 26 C -0.58 -10.79 6.74 72.68 0.49 -10.30 16 27 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.08 1.49 6.48 -2.39 -0.02 1.47 16 34 H 0.06 1.08 6.88 -2.39 -0.02 1.07 16 35 H 0.07 1.77 6.47 -2.38 -0.02 1.76 16 36 H 0.05 1.40 7.11 -2.38 -0.02 1.39 16 37 H 0.08 2.40 5.90 -2.39 -0.01 2.38 16 38 H 0.36 13.13 9.02 -74.06 -0.67 12.46 16 39 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.08 1.49 6.00 -2.39 -0.01 1.48 16 41 H 0.11 1.27 7.31 -2.39 -0.02 1.26 16 42 H 0.16 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.15 2.59 8.14 -2.38 -0.02 2.57 16 45 H 0.14 2.83 6.24 -2.39 -0.01 2.82 16 Total: -1.00 -78.08 360.56 -4.92 -83.00 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.15 Total: 22.21 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 4.58 Total: -31.12 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -3.43 Total: -73.48 kcal Atomic # 8 Polarization: -84.43 SS G_CDS: -7.73 Total: -92.16 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.85 Total: 46.14 kcal Atomic # 16 Polarization: 45.76 SS G_CDS: -0.34 Total: 45.41 kcal Total: -78.08 -4.92 -83.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333137819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.825 kcal (2) G-P(sol) polarization free energy of solvation -78.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds