Wall clock time and date at job start Fri Apr 10 2020 18:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48499 * 109.47369 * 240.00262 * 3 2 1 5 5 H 1.48494 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47275 * 120.00304 * 3 2 1 7 7 C 1.38654 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00272 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00013 * 185.05824 * 9 7 2 11 11 C 1.38874 * 120.06890 * 354.46142 * 10 9 7 12 12 C 1.38104 * 119.93265 * 180.29770 * 11 10 9 13 13 C 1.38306 * 120.06267 * 359.43007 * 12 11 10 14 14 C 1.50703 * 119.92975 * 180.29756 * 13 12 11 15 15 C 1.50697 * 109.47047 * 270.29820 * 14 13 12 16 16 O 1.21275 * 120.00030 * 359.97438 * 15 14 13 17 17 N 1.34782 * 120.00012 * 179.97438 * 15 14 13 18 18 C 1.48120 * 127.03044 * 359.68363 * 17 15 14 19 19 C 1.54600 * 103.41904 * 219.28684 * 18 17 15 20 20 H 1.08996 * 110.73077 * 81.24422 * 19 18 17 21 21 O 1.42899 * 110.82867 * 204.44894 * 19 18 17 22 22 C 1.54616 * 102.91076 * 322.86612 * 19 18 17 23 23 H 1.08998 * 110.41860 * 262.76083 * 22 19 18 24 24 C 1.53003 * 110.32467 * 140.59355 * 22 19 18 25 25 O 1.42898 * 109.46790 * 177.92624 * 24 22 19 26 26 C 1.47480 * 127.03513 * 179.97438 * 17 15 14 27 27 C 1.38302 * 120.13835 * 0.59213 * 13 12 11 28 28 C 1.38094 * 120.07102 * 359.68476 * 27 13 12 29 29 H 0.97006 * 119.99724 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.03972 * 0.02808 * 11 10 9 31 31 H 1.07990 * 119.96890 * 179.72053 * 12 11 10 32 32 H 1.09007 * 109.46898 * 30.29838 * 14 13 12 33 33 H 1.08998 * 109.47237 * 150.29459 * 14 13 12 34 34 H 1.08998 * 110.66384 * 337.76617 * 18 17 15 35 35 H 1.08999 * 110.66251 * 100.88636 * 18 17 15 36 36 H 0.96700 * 114.00070 * 293.55922 * 21 19 18 37 37 H 1.09001 * 109.47371 * 297.92573 * 24 22 19 38 38 H 1.08996 * 109.47112 * 57.92397 * 24 22 19 39 39 H 0.96709 * 113.99247 * 180.02562 * 25 24 22 40 40 H 1.09002 * 109.90945 * 273.88078 * 26 17 15 41 41 H 1.09002 * 109.91586 * 34.96214 * 26 17 15 42 42 H 1.08006 * 119.96376 * 179.69808 * 27 13 12 43 43 H 1.08005 * 120.03539 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4570 -3.4395 0.0920 12 6 4.2023 -4.5978 0.1940 13 6 3.5685 -5.8205 0.3213 14 6 4.3848 -7.0818 0.4391 15 6 4.6500 -7.6387 -0.9359 16 8 4.2183 -7.0679 -1.9150 17 7 5.3670 -8.7712 -1.0775 18 6 5.9698 -9.5862 0.0024 19 6 7.3337 -10.0119 -0.5882 20 1 8.0674 -9.2133 -0.4793 21 8 7.8013 -11.2136 0.0277 22 6 7.0042 -10.2533 -2.0794 23 1 6.8319 -11.3136 -2.2640 24 6 8.1409 -9.7386 -2.9649 25 8 7.8399 -10.0139 -4.3344 26 6 5.7167 -9.4491 -2.3397 27 6 2.1872 -5.8886 0.3346 28 6 1.4365 -4.7345 0.2274 29 1 -0.4850 0.8401 0.0004 30 1 3.9526 -2.4846 -0.0025 31 1 5.2809 -4.5483 0.1790 32 1 5.3322 -6.8570 0.9291 33 1 3.8360 -7.8160 1.0288 34 1 6.1113 -8.9880 0.9025 35 1 5.3545 -10.4609 0.2133 36 1 8.0217 -11.1157 0.9641 37 1 8.2511 -8.6631 -2.8262 38 1 9.0702 -10.2374 -2.6897 39 1 8.5192 -9.7147 -4.9542 40 1 4.9117 -10.1220 -2.6351 41 1 5.8889 -8.7104 -3.1226 42 1 1.6952 -6.8454 0.4293 43 1 0.3578 -4.7885 0.2374 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362531512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:38 Heat of formation + Delta-G solvation = -128.320194 kcal Electronic energy + Delta-G solvation = -26257.392116 eV Core-core repulsion = 22268.618869 eV Total energy + Delta-G solvation = -3988.773247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 3.13 seconds Orbital eigenvalues (eV) -40.47358 -39.12447 -38.34609 -37.00046 -36.48068 -35.66756 -32.56960 -32.15417 -31.05247 -30.11703 -28.85929 -27.24601 -25.70576 -24.85401 -23.35434 -21.94045 -21.06680 -20.46890 -19.36719 -18.25378 -17.94570 -17.65319 -17.06454 -16.91864 -16.05040 -15.70189 -15.26368 -14.97442 -14.56207 -14.51136 -14.29558 -14.01347 -13.78147 -13.60861 -13.49403 -13.23781 -12.97141 -12.69160 -12.66864 -12.45605 -11.98478 -11.83418 -11.58610 -11.48804 -11.24205 -11.22029 -10.81530 -10.72609 -10.68449 -10.61499 -10.41410 -10.39602 -9.72995 -9.29900 -8.85783 -8.78994 -8.11596 -7.13338 -6.41616 -4.00244 2.25075 2.28838 2.70980 2.80309 3.15114 3.16317 3.18930 3.43738 3.81644 3.99542 4.03249 4.33118 4.45772 4.53980 4.72220 4.81293 4.87283 4.94388 5.07119 5.13919 5.19028 5.21956 5.27212 5.33618 5.34848 5.40715 5.64737 5.66286 5.72571 5.75190 5.88092 6.06914 6.25198 6.45097 6.73560 6.94804 7.06228 7.08567 7.20999 7.27174 7.39305 7.39861 7.48456 7.87319 8.03561 8.23993 9.03889 9.74773 10.76460 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.002291 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.158081 B =12220.048227 C =12629.378537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.157 3.843 11 C -0.233 4.233 12 C -0.056 4.056 13 C -0.173 4.173 14 C -0.073 4.073 15 C 0.529 3.471 16 O -0.513 6.513 17 N -0.631 5.631 18 C 0.071 3.929 19 C 0.096 3.904 20 H 0.075 0.925 21 O -0.556 6.556 22 C -0.095 4.095 23 H 0.103 0.897 24 C 0.085 3.915 25 O -0.571 6.571 26 C 0.116 3.884 27 C -0.058 4.058 28 C -0.191 4.191 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.384 0.616 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.383 0.617 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.943 -20.769 1.239 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.104 3.896 11 C -0.252 4.252 12 C -0.074 4.074 13 C -0.174 4.174 14 C -0.113 4.113 15 C 0.318 3.682 16 O -0.387 6.387 17 N -0.369 5.369 18 C -0.053 4.053 19 C 0.036 3.964 20 H 0.093 0.907 21 O -0.361 6.361 22 C -0.114 4.114 23 H 0.121 0.879 24 C 0.007 3.993 25 O -0.376 6.376 26 C -0.007 4.007 27 C -0.077 4.077 28 C -0.211 4.211 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.232 0.768 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.543 -20.599 0.348 26.422 hybrid contribution 1.189 1.191 0.311 1.711 sum 17.732 -19.409 0.659 26.297 Atomic orbital electron populations 1.70032 1.05952 1.27726 1.46115 1.25283 0.95838 0.98807 0.96596 0.85785 0.78694 0.79813 0.79152 1.19515 1.20289 1.19531 1.21280 0.91771 0.80869 1.52865 0.89144 1.83978 1.34330 1.11449 1.78336 1.19387 0.90285 0.88032 0.91939 1.21094 0.93808 0.98767 1.11520 1.20490 0.97983 0.91824 0.97098 1.18633 0.93245 0.92480 1.13056 1.20383 1.01069 0.96791 0.93072 1.20822 0.76732 0.78015 0.92597 1.90766 1.49129 1.57791 1.40974 1.48849 1.55018 1.25333 1.07717 1.23119 0.94169 0.96196 0.91807 1.22736 0.94303 0.87135 0.92220 0.90702 1.86542 1.87236 1.33446 1.28908 1.22034 0.94768 1.02281 0.92334 0.87899 1.22175 0.96387 0.98798 0.81933 1.86474 1.50097 1.84659 1.16416 1.21966 0.95022 0.95967 0.87752 1.20396 0.92735 0.96619 0.97925 1.20156 0.99507 0.90318 1.11087 0.91998 0.85582 0.87898 0.89153 0.88996 0.89392 0.89924 0.76830 0.93239 0.93011 0.77005 0.91309 0.89703 0.87384 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -11.20 9.49 30.89 0.29 -10.91 16 8 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 9 O -0.18 -5.22 9.76 0.04 0.00 -5.22 16 10 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 11 C -0.23 -5.28 9.17 -39.40 -0.36 -5.64 16 12 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 13 C -0.17 -3.07 4.38 -104.57 -0.46 -3.53 16 14 C -0.07 -0.94 4.76 -29.04 -0.14 -1.08 16 15 C 0.53 7.75 7.88 -10.98 -0.09 7.66 16 16 O -0.51 -10.17 16.37 5.56 0.09 -10.08 16 17 N -0.63 -6.95 3.29 -169.97 -0.56 -7.51 16 18 C 0.07 0.49 6.65 -2.31 -0.02 0.47 16 19 C 0.10 0.60 3.98 -25.04 -0.10 0.50 16 20 H 0.08 0.41 7.86 -51.93 -0.41 0.00 16 21 O -0.56 -3.17 13.40 -35.23 -0.47 -3.64 16 22 C -0.10 -0.77 3.05 -89.24 -0.27 -1.05 16 23 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 24 C 0.09 0.62 6.12 37.16 0.23 0.85 16 25 O -0.57 -4.69 13.41 -35.23 -0.47 -5.17 16 26 C 0.12 1.24 6.47 -2.97 -0.02 1.22 16 27 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 28 C -0.19 -4.26 9.99 -39.40 -0.39 -4.65 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 31 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.09 0.92 7.84 -51.93 -0.41 0.51 16 33 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.09 0.43 7.23 -51.93 -0.38 0.06 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.38 0.49 9.12 45.56 0.42 0.91 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.38 1.46 9.12 45.56 0.42 1.88 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.08 7.52 -51.93 -0.39 0.69 16 42 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 43 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -37.50 364.99 -6.88 -44.38 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.25 Total: 5.29 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -2.45 Total: -14.39 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.20 Total: -32.50 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.85 Total: -24.10 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.50 -6.88 -44.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362531512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.938 kcal (2) G-P(sol) polarization free energy of solvation -37.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds