Wall clock time and date at job start Fri Apr 10 2020 18:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48494 * 109.47164 * 270.00123 * 3 2 1 5 5 H 1.48499 * 109.47014 * 30.00665 * 3 2 1 6 6 H 1.48506 * 109.46904 * 150.00091 * 3 2 1 7 7 C 1.38653 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99765 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00325 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99766 * 185.05796 * 9 7 2 11 11 C 1.38880 * 120.06310 * 174.19245 * 10 9 7 12 12 C 1.38102 * 119.92774 * 179.76605 * 11 10 9 13 13 C 1.38304 * 120.06899 * 0.48540 * 12 11 10 14 14 C 1.50701 * 119.93110 * 179.74393 * 13 12 11 15 15 C 1.50700 * 109.47133 * 270.02178 * 14 13 12 16 16 O 1.21283 * 120.00069 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99615 * 180.02562 * 15 14 13 18 18 C 1.47415 * 125.65086 * 359.68743 * 17 15 14 19 19 C 1.55133 * 104.72245 * 155.82231 * 18 17 15 20 20 H 1.09007 * 111.19081 * 279.19349 * 19 18 17 21 21 O 1.42892 * 110.94066 * 155.29418 * 19 18 17 22 22 C 1.55154 * 101.48506 * 37.29612 * 19 18 17 23 23 H 1.09000 * 110.71795 * 82.69886 * 22 19 18 24 24 C 1.53004 * 110.71891 * 205.97245 * 22 19 18 25 25 O 1.42899 * 109.47146 * 179.97438 * 24 22 19 26 26 C 1.47022 * 125.64455 * 179.97438 * 17 15 14 27 27 C 1.38302 * 120.13789 * 359.76939 * 13 12 11 28 28 C 1.38105 * 120.06695 * 359.97438 * 27 13 12 29 29 H 0.97003 * 120.00171 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03810 * 359.97438 * 11 10 9 31 31 H 1.07994 * 119.96815 * 180.22560 * 12 11 10 32 32 H 1.08992 * 109.47296 * 30.02375 * 14 13 12 33 33 H 1.09000 * 109.46833 * 150.02416 * 14 13 12 34 34 H 1.09002 * 110.37023 * 274.75482 * 18 17 15 35 35 H 1.08999 * 110.36812 * 37.07472 * 18 17 15 36 36 H 0.96703 * 114.00422 * 67.95513 * 21 19 18 37 37 H 1.09000 * 109.46978 * 299.97299 * 24 22 19 38 38 H 1.08998 * 109.47024 * 59.97751 * 24 22 19 39 39 H 0.96700 * 114.00265 * 179.97438 * 25 24 22 40 40 H 1.08996 * 109.88243 * 300.44080 * 26 17 15 41 41 H 1.08999 * 109.88256 * 61.44946 * 26 17 15 42 42 H 1.08001 * 119.96675 * 179.97438 * 27 13 12 43 43 H 1.07996 * 120.03107 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 1.4366 -4.7339 0.2335 12 6 2.1874 -5.8885 0.3364 13 6 3.5687 -5.8204 0.3222 14 6 4.3850 -7.0816 0.4405 15 6 4.6643 -7.3648 1.8940 16 8 4.2425 -6.6158 2.7497 17 7 5.3838 -8.4497 2.2430 18 6 5.9496 -9.4417 1.3109 19 6 7.1400 -10.0719 2.0806 20 1 8.0235 -9.4354 2.0296 21 8 7.4279 -11.3831 1.5911 22 6 6.5781 -10.1286 3.5257 23 1 5.9558 -11.0128 3.6631 24 6 7.7145 -10.1001 4.5499 25 8 7.1681 -10.1528 5.8692 26 6 5.7291 -8.8431 3.6169 27 6 4.2024 -4.5972 0.2002 28 6 3.4571 -3.4396 0.0917 29 1 -0.4850 0.8401 0.0004 30 1 0.3580 -4.7873 0.2491 31 1 1.6955 -6.8451 0.4322 32 1 3.8311 -7.9148 0.0080 33 1 5.3272 -6.9559 -0.0928 34 1 5.2067 -10.2016 1.0684 35 1 6.3022 -8.9516 0.4034 36 1 7.7815 -11.3982 0.6912 37 1 8.3671 -10.9589 4.3923 38 1 8.2881 -9.1810 4.4306 39 1 7.8330 -10.1388 6.5712 40 1 6.3052 -8.0512 4.0955 41 1 4.8203 -9.0363 4.1868 42 1 5.2812 -4.5472 0.1899 43 1 3.9526 -2.4846 -0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362531520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:47 Heat of formation + Delta-G solvation = -161.491969 kcal Electronic energy + Delta-G solvation = -26173.114668 eV Core-core repulsion = 22182.902985 eV Total energy + Delta-G solvation = -3990.211683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.41350 -40.68816 -39.45062 -38.14675 -37.51625 -36.43010 -34.41222 -33.36595 -32.29686 -31.78354 -29.51502 -28.55736 -27.31686 -26.11500 -23.87353 -23.64817 -22.44014 -21.42922 -20.38035 -19.84153 -18.84598 -18.72910 -18.21258 -17.97191 -17.10556 -16.71731 -16.36457 -16.25725 -15.91245 -15.84142 -15.50659 -15.42991 -15.00596 -14.72996 -14.58990 -14.38589 -14.17153 -13.96191 -13.68293 -13.60574 -13.56093 -12.96227 -12.86450 -12.71051 -12.48345 -12.33568 -12.26732 -12.15555 -12.11972 -11.68239 -11.25124 -11.18584 -10.93472 -10.88718 -10.74106 -9.77630 -9.73013 -8.91620 -8.47760 -6.16083 0.60468 0.64793 1.33469 1.43221 1.51768 1.63498 1.90219 2.17378 2.81392 2.99291 3.10914 3.22690 3.40772 3.51642 3.79845 3.82914 3.98932 4.03288 4.05462 4.18711 4.20370 4.27877 4.37655 4.44717 4.51332 4.57151 4.61316 4.67375 4.75045 4.78760 4.80627 4.87880 5.06525 5.11652 5.14006 5.24833 5.29609 5.55479 5.70655 5.76132 6.02244 6.20878 6.44948 6.87980 6.90530 6.96623 7.17822 7.77863 8.75761 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024357 B = 0.002232 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.274140 B =12541.239033 C =12933.942792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.112 3.888 11 C -0.207 4.207 12 C -0.058 4.058 13 C -0.148 4.148 14 C -0.069 4.069 15 C 0.523 3.477 16 O -0.581 6.581 17 N -0.621 5.621 18 C 0.065 3.935 19 C 0.111 3.889 20 H 0.098 0.902 21 O -0.565 6.565 22 C -0.091 4.091 23 H 0.088 0.912 24 C 0.088 3.912 25 O -0.596 6.596 26 C 0.118 3.882 27 C -0.058 4.058 28 C -0.243 4.243 29 H 0.273 0.727 30 H 0.112 0.888 31 H 0.144 0.856 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.405 0.595 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.400 0.600 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.140 0.860 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.961 -24.660 1.659 33.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.062 3.938 11 C -0.226 4.226 12 C -0.076 4.076 13 C -0.149 4.149 14 C -0.108 4.108 15 C 0.313 3.687 16 O -0.459 6.459 17 N -0.357 5.357 18 C -0.057 4.057 19 C 0.051 3.949 20 H 0.115 0.885 21 O -0.373 6.373 22 C -0.110 4.110 23 H 0.107 0.893 24 C 0.010 3.990 25 O -0.405 6.405 26 C -0.005 4.005 27 C -0.076 4.076 28 C -0.263 4.263 29 H 0.082 0.918 30 H 0.130 0.870 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.257 0.743 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.250 0.750 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.158 0.842 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 20.523 -24.223 2.314 31.832 hybrid contribution 0.263 1.299 0.135 1.332 sum 20.786 -22.924 2.449 31.041 Atomic orbital electron populations 1.70192 1.08053 1.28801 1.48963 1.26636 0.96909 1.02813 0.95856 0.84565 0.77686 0.74393 0.79396 1.18401 1.19562 1.17858 1.21832 0.92508 0.81493 1.53229 0.88208 1.83939 1.35957 1.12586 1.81529 1.19935 0.91710 0.87948 0.94190 1.20434 0.99892 0.90744 1.11538 1.20866 0.93601 0.96902 0.96254 1.19252 0.93317 0.94581 1.07763 1.20505 1.02659 0.96388 0.91266 1.21054 0.76473 0.78797 0.92339 1.90765 1.52530 1.48678 1.53958 1.48473 1.53789 1.25005 1.08442 1.23362 0.96548 0.91753 0.94035 1.22787 0.96239 0.84919 0.90989 0.88455 1.86504 1.87003 1.26205 1.37599 1.22176 0.97128 0.97085 0.94619 0.89315 1.22160 0.93825 1.01313 0.81687 1.86453 1.39833 1.97643 1.16600 1.21843 0.98613 0.96107 0.83967 1.20934 0.99762 0.91013 0.95899 1.21232 0.93075 1.00044 1.11907 0.91827 0.87031 0.83804 0.85358 0.84948 0.89511 0.86665 0.74299 0.91240 0.92234 0.75013 0.92164 0.93334 0.84185 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.43 13.67 21.61 0.30 -58.13 16 2 C -0.03 -1.47 5.49 84.83 0.47 -1.01 16 3 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.41 -25.21 9.49 67.92 0.64 -24.57 16 8 H 0.10 5.59 5.20 -2.91 -0.02 5.58 16 9 O -0.23 -14.77 9.76 -22.78 -0.22 -15.00 16 10 C 0.11 5.98 6.65 22.58 0.15 6.13 16 11 C -0.21 -9.54 9.99 22.39 0.22 -9.32 16 12 C -0.06 -2.12 9.69 22.25 0.22 -1.91 16 13 C -0.15 -4.84 4.38 -19.83 -0.09 -4.93 16 14 C -0.07 -1.43 4.83 29.10 0.14 -1.29 16 15 C 0.52 13.95 7.84 87.66 0.69 14.64 16 16 O -0.58 -22.80 16.36 -3.04 -0.05 -22.84 16 17 N -0.62 -11.96 3.32 -811.37 -2.70 -14.66 16 18 C 0.07 0.59 6.44 86.94 0.56 1.15 16 19 C 0.11 0.86 3.89 32.06 0.12 0.98 16 20 H 0.10 0.45 8.05 -2.38 -0.02 0.43 16 21 O -0.56 -3.65 13.47 -148.98 -2.01 -5.65 16 22 C -0.09 -1.25 2.97 -9.61 -0.03 -1.28 16 23 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 24 C 0.09 0.97 6.36 71.98 0.46 1.43 16 25 O -0.60 -8.57 13.50 -148.98 -2.01 -10.58 16 26 C 0.12 2.41 6.31 86.73 0.55 2.95 16 27 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 28 C -0.24 -11.31 9.17 22.39 0.21 -11.11 16 29 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 31 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 32 H 0.13 1.85 8.08 -2.39 -0.02 1.83 16 33 H 0.13 1.76 7.79 -2.39 -0.02 1.75 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.12 0.37 7.48 -2.39 -0.02 0.36 16 36 H 0.41 -1.19 9.12 -74.06 -0.68 -1.86 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.06 0.53 8.06 -2.39 -0.02 0.52 16 39 H 0.40 2.04 9.12 -74.06 -0.68 1.36 16 40 H 0.06 1.36 7.76 -2.39 -0.02 1.34 16 41 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.12 5.55 5.64 -2.91 -0.02 5.54 16 Total: -1.00 -91.18 365.50 -0.44 -91.62 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.29 Total: 18.92 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 4.52 Total: -30.02 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -2.40 Total: -72.79 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -4.29 Total: -54.08 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -91.18 -0.44 -91.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362531520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.872 kcal (2) G-P(sol) polarization free energy of solvation -91.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds