Wall clock time and date at job start Fri Apr 10 2020 18:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47273 * 2 1 4 4 N 1.46501 * 109.47031 * 179.97438 * 3 2 1 5 5 C 1.36811 * 119.99877 * 265.79969 * 4 3 2 6 6 H 1.07998 * 119.99380 * 143.52023 * 5 4 3 7 7 C 1.39036 * 119.99999 * 323.52139 * 5 4 3 8 8 N 1.31379 * 120.00314 * 339.86174 * 7 5 4 9 9 Si 1.86801 * 119.99790 * 159.86718 * 7 5 4 10 10 H 1.48502 * 109.47174 * 89.99808 * 9 7 5 11 11 H 1.48502 * 109.47254 * 209.99675 * 9 7 5 12 12 H 1.48493 * 109.47140 * 329.99716 * 9 7 5 13 13 C 1.34770 * 119.99760 * 85.80420 * 4 3 2 14 14 O 1.21822 * 120.00226 * 4.93187 * 13 4 3 15 15 C 1.41447 * 119.99983 * 184.93666 * 13 4 3 16 16 C 1.35447 * 120.00509 * 175.25856 * 15 13 4 17 17 C 1.46518 * 119.99644 * 353.68150 * 16 15 13 18 18 C 1.38386 * 120.98234 * 113.42238 * 17 16 15 19 19 N 1.35967 * 119.26804 * 179.97438 * 18 17 16 20 20 C 1.46504 * 119.24662 * 180.02562 * 19 18 17 21 21 C 1.34218 * 121.50711 * 359.97438 * 19 18 17 22 22 O 1.21557 * 118.91135 * 180.02562 * 21 19 18 23 23 N 1.34388 * 122.18583 * 359.97438 * 21 19 18 24 24 C 1.46503 * 119.75667 * 180.02562 * 23 21 19 25 25 C 1.34971 * 120.48451 * 359.74040 * 23 21 19 26 26 O 1.21667 * 120.74488 * 180.28230 * 25 23 21 27 27 H 1.09002 * 109.47464 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47645 * 299.99655 * 1 2 3 29 29 H 1.08999 * 109.47042 * 60.00296 * 1 2 3 30 30 H 1.08998 * 109.47192 * 239.99731 * 2 1 3 31 31 H 1.09004 * 109.47073 * 120.00191 * 2 1 3 32 32 H 1.09003 * 109.46395 * 60.00010 * 3 2 1 33 33 H 1.08990 * 109.47034 * 300.00007 * 3 2 1 34 34 H 0.97000 * 119.99987 * 179.97438 * 8 7 5 35 35 H 1.08002 * 119.99781 * 354.98421 * 15 13 4 36 36 H 1.08001 * 120.00588 * 173.67652 * 16 15 13 37 37 H 1.07996 * 120.36709 * 0.02562 * 18 17 16 38 38 H 1.08994 * 109.47236 * 0.02562 * 20 19 18 39 39 H 1.09002 * 109.46844 * 120.00957 * 20 19 18 40 40 H 1.08999 * 109.47286 * 240.00144 * 20 19 18 41 41 H 1.09005 * 109.47164 * 90.00410 * 24 23 21 42 42 H 1.09005 * 109.47052 * 209.99824 * 24 23 21 43 43 H 1.08994 * 109.47186 * 329.99886 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1886 1.5294 1.1825 6 1 5.1097 0.9814 1.3150 7 6 3.6972 2.3230 2.2130 8 7 2.8327 3.2773 1.9522 9 14 4.2666 2.0326 3.9683 10 1 5.4709 2.8576 4.2409 11 1 3.1827 2.4128 4.9096 12 1 4.5988 0.5967 4.1497 13 6 4.1793 1.3568 -1.1631 14 8 3.5740 1.3701 -2.2203 15 6 5.5898 1.2515 -1.1571 16 6 6.2604 1.0689 -2.3197 17 6 5.5208 0.8421 -3.5641 18 6 5.5451 1.7737 -4.5871 19 7 4.8464 1.5274 -5.7272 20 6 4.8729 2.5137 -6.8102 21 6 4.1337 0.4009 -5.8836 22 8 3.5270 0.2288 -6.9227 23 7 4.0694 -0.5437 -4.9298 24 6 3.2754 -1.7537 -5.1572 25 6 4.7356 -0.3883 -3.7662 26 8 4.6848 -1.2428 -2.9016 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 2.4897 3.8307 2.6712 35 1 6.1326 1.3210 -0.2260 36 1 7.3401 1.0906 -2.3296 37 1 6.1135 2.6859 -4.4814 38 1 5.4955 3.3589 -6.5167 39 1 5.2839 2.0549 -7.7094 40 1 3.8593 2.8609 -7.0103 41 1 3.9016 -2.5180 -5.6176 42 1 2.8937 -2.1221 -4.2049 43 1 2.4404 -1.5215 -5.8180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056484901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:20 Heat of formation + Delta-G solvation = -34.823919 kcal Electronic energy + Delta-G solvation = -28437.653613 eV Core-core repulsion = 24485.227419 eV Total energy + Delta-G solvation = -3952.426194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.80892 -39.03550 -38.37109 -37.02311 -35.34573 -34.82926 -33.30957 -32.75480 -31.38386 -29.97749 -27.98575 -26.68750 -25.97789 -24.88452 -23.49397 -23.14694 -21.58945 -20.18194 -19.01589 -18.71721 -17.53073 -16.90912 -16.82562 -16.23617 -15.82289 -15.30612 -14.84978 -14.62273 -14.57492 -14.30196 -14.03039 -13.70266 -13.35769 -13.30268 -13.11601 -12.86516 -12.67459 -12.57503 -12.28233 -12.22453 -11.77173 -11.43423 -11.41175 -11.24622 -11.07704 -10.96756 -10.66119 -10.62572 -10.36676 -10.26673 -9.84107 -9.71982 -9.46124 -9.18549 -8.89373 -8.52874 -7.55013 -7.42763 -6.42729 -4.07996 1.40509 1.95564 2.20572 2.39269 3.08999 3.18017 3.22805 3.38808 3.85025 4.05116 4.48339 4.60974 4.76887 4.87609 5.05303 5.09907 5.22440 5.42624 5.49627 5.50710 5.59801 5.73820 5.80313 5.82336 5.84357 5.91647 6.04508 6.16133 6.32143 6.43594 6.53119 6.56629 6.63801 6.70641 6.86269 6.93995 7.05429 7.24235 7.33018 7.48513 7.55742 7.85119 7.92002 8.31883 8.34431 9.02781 9.51728 9.96109 10.57083 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.004232 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.401416 B = 6615.261221 C = 7235.336606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C 0.115 3.885 4 N -0.423 5.423 5 C -0.337 4.337 6 H 0.091 0.909 7 C 0.044 3.956 8 N -0.854 5.854 9 Si 0.914 3.086 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.489 3.511 14 O -0.603 6.603 15 C -0.123 4.123 16 C -0.077 4.077 17 C -0.149 4.149 18 C 0.120 3.880 19 N -0.529 5.529 20 C 0.090 3.910 21 C 0.696 3.304 22 O -0.563 6.563 23 N -0.553 5.553 24 C 0.085 3.915 25 C 0.573 3.427 26 O -0.503 6.503 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.271 0.729 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.171 0.829 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.088 -1.465 -10.355 11.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C -0.009 4.009 4 N -0.138 5.138 5 C -0.465 4.465 6 H 0.109 0.891 7 C -0.163 4.163 8 N -0.490 5.490 9 Si 0.740 3.260 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.282 3.718 14 O -0.492 6.492 15 C -0.144 4.144 16 C -0.099 4.099 17 C -0.159 4.159 18 C -0.001 4.001 19 N -0.249 5.249 20 C -0.052 4.052 21 C 0.400 3.600 22 O -0.439 6.439 23 N -0.297 5.297 24 C -0.056 4.056 25 C 0.367 3.633 26 O -0.376 6.376 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.188 0.812 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.196 -1.879 -10.879 11.810 hybrid contribution 0.165 0.092 1.247 1.261 sum 4.361 -1.787 -9.632 10.723 Atomic orbital electron populations 1.21645 0.96624 1.00407 1.01263 1.21815 0.94596 0.99338 1.01401 1.21411 0.81572 0.94485 1.03397 1.43432 1.04975 1.60469 1.04917 1.19442 1.09048 1.27320 0.90739 0.89100 1.25400 0.96875 0.93510 1.00513 1.69918 1.30231 1.15560 1.33319 0.86147 0.78528 0.79218 0.82124 1.20121 1.20667 1.19189 1.17107 0.88062 0.82502 0.84129 1.90609 1.70316 1.57594 1.30719 1.22505 0.96067 0.97758 0.98086 1.21346 0.97531 1.01132 0.89879 1.20294 1.04352 0.95283 0.95941 1.22387 0.94333 0.98847 0.84524 1.43949 1.45024 1.18739 1.17142 1.21930 1.04090 0.90407 0.88738 1.15583 0.80497 0.80035 0.83897 1.90931 1.47678 1.78534 1.26765 1.46133 1.46818 1.20333 1.16382 1.21783 0.95804 0.84231 1.03798 1.18468 0.77951 0.86978 0.79903 1.90785 1.61636 1.44255 1.40954 0.93633 0.93020 0.93280 0.92921 0.92399 0.87825 0.92965 0.91911 0.84961 0.85294 0.81181 0.89148 0.90643 0.90539 0.91466 0.89184 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.91 37.16 0.37 -2.16 16 2 C -0.13 -2.89 6.23 -26.73 -0.17 -3.06 16 3 C 0.12 2.82 4.95 -4.04 -0.02 2.80 16 4 N -0.42 -10.76 2.53 -118.11 -0.30 -11.06 16 5 C -0.34 -8.48 8.52 -15.03 -0.13 -8.61 16 6 H 0.09 2.18 6.59 -52.49 -0.35 1.83 16 7 C 0.04 1.08 4.96 -17.45 -0.09 0.99 16 8 N -0.85 -22.19 11.36 55.50 0.63 -21.56 16 9 Si 0.91 19.02 29.60 -169.99 -5.03 13.98 16 10 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 12 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 13 C 0.49 11.99 7.05 -15.04 -0.11 11.88 16 14 O -0.60 -15.43 12.43 4.28 0.05 -15.38 16 15 C -0.12 -2.54 9.09 -39.36 -0.36 -2.90 16 16 C -0.08 -1.30 9.48 -37.24 -0.35 -1.66 16 17 C -0.15 -2.62 3.68 -102.80 -0.38 -3.00 16 18 C 0.12 1.67 10.20 -15.66 -0.16 1.51 16 19 N -0.53 -7.39 2.98 -128.41 -0.38 -7.78 16 20 C 0.09 0.84 9.94 59.85 0.59 1.44 16 21 C 0.70 11.83 8.09 -87.77 -0.71 11.12 16 22 O -0.56 -10.13 15.62 5.32 0.08 -10.04 16 23 N -0.55 -9.91 2.96 -129.58 -0.38 -10.29 16 24 C 0.09 1.29 10.11 59.85 0.61 1.89 16 25 C 0.57 11.40 5.90 -12.46 -0.07 11.32 16 26 O -0.50 -11.39 16.09 4.42 0.07 -11.32 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.10 2.66 5.43 -51.93 -0.28 2.38 16 33 H 0.05 1.34 7.48 -51.93 -0.39 0.95 16 34 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 35 H 0.13 2.56 6.33 -52.49 -0.33 2.23 16 36 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.17 1.66 7.84 -52.49 -0.41 1.25 16 38 H 0.09 0.54 7.72 -51.93 -0.40 0.14 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.09 1.41 7.44 -51.93 -0.39 1.03 16 43 H 0.09 1.24 7.35 -51.93 -0.38 0.86 16 LS Contribution 360.70 15.07 5.44 5.44 Total: -1.00 -33.66 360.70 -6.66 -40.32 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.87 Total: 6.12 kcal Atomic # 6 Polarization: 22.54 SS G_CDS: -0.97 Total: 21.57 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.43 Total: -50.69 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: 0.21 Total: -36.74 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.66 -6.66 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.500 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds