Wall clock time and date at job start Fri Apr 10 2020 18:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47273 * 2 1 4 4 N 1.46501 * 109.47031 * 179.97438 * 3 2 1 5 5 C 1.36811 * 119.99877 * 265.79969 * 4 3 2 6 6 H 1.07998 * 119.99380 * 143.52023 * 5 4 3 7 7 C 1.39036 * 119.99999 * 323.52139 * 5 4 3 8 8 N 1.31379 * 120.00314 * 339.86174 * 7 5 4 9 9 Si 1.86801 * 119.99790 * 159.86718 * 7 5 4 10 10 H 1.48502 * 109.47174 * 89.99808 * 9 7 5 11 11 H 1.48502 * 109.47254 * 209.99675 * 9 7 5 12 12 H 1.48493 * 109.47140 * 329.99716 * 9 7 5 13 13 C 1.34770 * 119.99760 * 85.80420 * 4 3 2 14 14 O 1.21822 * 120.00226 * 4.93187 * 13 4 3 15 15 C 1.41447 * 119.99983 * 184.93666 * 13 4 3 16 16 C 1.35447 * 120.00509 * 175.25856 * 15 13 4 17 17 C 1.46518 * 119.99644 * 353.68150 * 16 15 13 18 18 C 1.38386 * 120.98234 * 113.42238 * 17 16 15 19 19 N 1.35967 * 119.26804 * 179.97438 * 18 17 16 20 20 C 1.46504 * 119.24662 * 180.02562 * 19 18 17 21 21 C 1.34218 * 121.50711 * 359.97438 * 19 18 17 22 22 O 1.21557 * 118.91135 * 180.02562 * 21 19 18 23 23 N 1.34388 * 122.18583 * 359.97438 * 21 19 18 24 24 C 1.46503 * 119.75667 * 180.02562 * 23 21 19 25 25 C 1.34971 * 120.48451 * 359.74040 * 23 21 19 26 26 O 1.21667 * 120.74488 * 180.28230 * 25 23 21 27 27 H 1.09002 * 109.47464 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47645 * 299.99655 * 1 2 3 29 29 H 1.08999 * 109.47042 * 60.00296 * 1 2 3 30 30 H 1.08998 * 109.47192 * 239.99731 * 2 1 3 31 31 H 1.09004 * 109.47073 * 120.00191 * 2 1 3 32 32 H 1.09003 * 109.46395 * 60.00010 * 3 2 1 33 33 H 1.08990 * 109.47034 * 300.00007 * 3 2 1 34 34 H 0.97000 * 119.99987 * 179.97438 * 8 7 5 35 35 H 1.08002 * 119.99781 * 354.98421 * 15 13 4 36 36 H 1.08001 * 120.00588 * 173.67652 * 16 15 13 37 37 H 1.07996 * 120.36709 * 0.02562 * 18 17 16 38 38 H 1.08994 * 109.47236 * 0.02562 * 20 19 18 39 39 H 1.09002 * 109.46844 * 120.00957 * 20 19 18 40 40 H 1.08999 * 109.47286 * 240.00144 * 20 19 18 41 41 H 1.09005 * 109.47164 * 90.00410 * 24 23 21 42 42 H 1.09005 * 109.47052 * 209.99824 * 24 23 21 43 43 H 1.08994 * 109.47186 * 329.99886 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1886 1.5294 1.1825 6 1 5.1097 0.9814 1.3150 7 6 3.6972 2.3230 2.2130 8 7 2.8327 3.2773 1.9522 9 14 4.2666 2.0326 3.9683 10 1 5.4709 2.8576 4.2409 11 1 3.1827 2.4128 4.9096 12 1 4.5988 0.5967 4.1497 13 6 4.1793 1.3568 -1.1631 14 8 3.5740 1.3701 -2.2203 15 6 5.5898 1.2515 -1.1571 16 6 6.2604 1.0689 -2.3197 17 6 5.5208 0.8421 -3.5641 18 6 5.5451 1.7737 -4.5871 19 7 4.8464 1.5274 -5.7272 20 6 4.8729 2.5137 -6.8102 21 6 4.1337 0.4009 -5.8836 22 8 3.5270 0.2288 -6.9227 23 7 4.0694 -0.5437 -4.9298 24 6 3.2754 -1.7537 -5.1572 25 6 4.7356 -0.3883 -3.7662 26 8 4.6848 -1.2428 -2.9016 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 2.4897 3.8307 2.6712 35 1 6.1326 1.3210 -0.2260 36 1 7.3401 1.0906 -2.3296 37 1 6.1135 2.6859 -4.4814 38 1 5.4955 3.3589 -6.5167 39 1 5.2839 2.0549 -7.7094 40 1 3.8593 2.8609 -7.0103 41 1 3.9016 -2.5180 -5.6176 42 1 2.8937 -2.1221 -4.2049 43 1 2.4404 -1.5215 -5.8180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056484901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:19 Heat of formation + Delta-G solvation = -56.084638 kcal Electronic energy + Delta-G solvation = -28438.575547 eV Core-core repulsion = 24485.227419 eV Total energy + Delta-G solvation = -3953.348127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.12191 -40.71811 -39.88255 -38.31150 -37.10480 -36.25733 -34.87974 -34.39545 -33.20890 -31.26289 -29.24486 -27.90036 -27.57255 -26.63151 -24.88088 -24.49899 -23.12464 -21.89513 -20.72106 -20.07373 -18.95097 -18.30042 -18.23679 -17.95818 -17.29965 -16.64116 -16.55087 -16.11655 -15.85846 -15.81033 -15.61158 -15.42842 -14.84944 -14.75891 -14.51864 -14.25180 -13.93806 -13.86041 -13.65030 -13.38861 -13.27125 -13.19121 -12.94604 -12.86964 -12.62833 -12.40866 -12.18122 -12.04870 -11.99359 -11.97633 -11.57326 -11.33960 -11.00834 -10.84056 -10.47536 -10.18411 -9.38686 -8.83914 -8.27385 -6.00564 0.11278 0.50344 0.97594 1.06466 1.45555 1.49815 1.61049 2.10689 2.32544 2.49595 2.72637 3.10879 3.31127 3.43910 3.76421 4.10065 4.16747 4.22596 4.26548 4.31921 4.38076 4.43054 4.44499 4.51181 4.57204 4.59651 4.70699 4.80052 4.82913 4.90740 4.94881 5.02685 5.14936 5.23867 5.30806 5.31660 5.44318 5.49728 5.56256 5.77867 6.06997 6.24420 6.46793 6.50650 6.93452 7.15653 7.68347 8.12403 8.73665 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.004232 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.401416 B = 6615.261221 C = 7235.336606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.121 4.121 3 C 0.121 3.879 4 N -0.447 5.447 5 C -0.352 4.352 6 H 0.096 0.904 7 C 0.004 3.996 8 N -0.891 5.891 9 Si 0.982 3.018 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.265 1.265 13 C 0.485 3.515 14 O -0.625 6.625 15 C -0.181 4.181 16 C -0.018 4.018 17 C -0.214 4.214 18 C 0.169 3.831 19 N -0.524 5.524 20 C 0.079 3.921 21 C 0.686 3.314 22 O -0.576 6.576 23 N -0.561 5.561 24 C 0.082 3.918 25 C 0.563 3.437 26 O -0.550 6.550 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.028 0.972 34 H 0.272 0.728 35 H 0.137 0.863 36 H 0.179 0.821 37 H 0.226 0.774 38 H 0.135 0.865 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.960 -0.502 -11.394 13.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C -0.003 4.003 4 N -0.164 5.164 5 C -0.480 4.480 6 H 0.113 0.887 7 C -0.199 4.199 8 N -0.528 5.528 9 Si 0.805 3.195 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.189 1.189 13 C 0.279 3.721 14 O -0.516 6.516 15 C -0.201 4.201 16 C -0.040 4.040 17 C -0.223 4.223 18 C 0.046 3.954 19 N -0.242 5.242 20 C -0.060 4.060 21 C 0.389 3.611 22 O -0.454 6.454 23 N -0.303 5.303 24 C -0.059 4.059 25 C 0.360 3.640 26 O -0.427 6.427 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.154 0.846 36 H 0.196 0.804 37 H 0.242 0.758 38 H 0.154 0.846 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.077 -0.899 -11.975 13.459 hybrid contribution -0.380 -0.174 1.205 1.276 sum 5.696 -1.073 -10.770 12.231 Atomic orbital electron populations 1.21590 0.93485 1.02239 1.01754 1.21691 0.97299 0.97268 0.99756 1.21272 0.82118 0.95532 1.01343 1.43654 1.05087 1.62002 1.05607 1.19701 1.09573 1.27625 0.91110 0.88666 1.26203 0.96906 0.92874 1.03957 1.70016 1.31761 1.16627 1.34400 0.85112 0.78141 0.79076 0.77141 1.19140 1.20711 1.18945 1.17767 0.89747 0.81037 0.83503 1.90565 1.71402 1.58307 1.31300 1.22389 0.94129 1.03579 1.00014 1.21930 0.99655 0.94132 0.88257 1.20422 1.07569 0.96305 0.97983 1.23120 0.91169 0.98602 0.82497 1.44361 1.43336 1.18300 1.18178 1.22376 1.04961 0.90665 0.88029 1.15863 0.80949 0.80729 0.83540 1.90919 1.48366 1.78976 1.27127 1.46311 1.46553 1.21192 1.16288 1.21890 0.96381 0.84316 1.03321 1.18923 0.77923 0.87473 0.79727 1.90748 1.63622 1.45981 1.42383 0.91104 0.92152 0.93128 0.95358 0.92990 0.89121 0.95371 0.91824 0.84577 0.80352 0.75764 0.84628 0.89360 0.91143 0.89216 0.90612 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 9.91 71.98 0.71 -4.05 16 2 C -0.12 -5.51 6.23 30.59 0.19 -5.32 16 3 C 0.12 6.25 4.95 86.38 0.43 6.67 16 4 N -0.45 -23.69 2.53 -645.76 -1.63 -25.32 16 5 C -0.35 -18.20 8.52 84.11 0.72 -17.48 16 6 H 0.10 4.68 6.59 -2.91 -0.02 4.66 16 7 C 0.00 0.18 4.96 84.95 0.42 0.60 16 8 N -0.89 -47.45 11.36 21.68 0.25 -47.20 16 9 Si 0.98 39.29 29.60 68.60 2.03 41.32 16 10 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 11 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 12 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 13 C 0.49 24.45 7.05 85.03 0.60 25.05 16 14 O -0.63 -32.88 12.43 -3.98 -0.05 -32.93 16 15 C -0.18 -7.42 9.09 22.42 0.20 -7.21 16 16 C -0.02 -0.58 9.48 23.78 0.23 -0.35 16 17 C -0.21 -7.09 3.68 -18.68 -0.07 -7.16 16 18 C 0.17 4.00 10.20 84.09 0.86 4.86 16 19 N -0.52 -12.93 2.98 -678.75 -2.02 -14.95 16 20 C 0.08 1.14 9.94 127.77 1.27 2.41 16 21 C 0.69 22.32 8.09 179.35 1.45 23.78 16 22 O -0.58 -20.02 15.62 -3.89 -0.06 -20.08 16 23 N -0.56 -20.06 2.96 -800.49 -2.37 -22.43 16 24 C 0.08 2.52 10.11 127.77 1.29 3.82 16 25 C 0.56 22.50 5.90 86.61 0.51 23.01 16 26 O -0.55 -25.84 16.09 -3.48 -0.06 -25.90 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.09 4.88 5.43 -2.39 -0.01 4.87 16 33 H 0.03 1.52 7.48 -2.39 -0.02 1.51 16 34 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 35 H 0.14 5.32 6.33 -2.91 -0.02 5.30 16 36 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.23 2.83 7.84 -2.91 -0.02 2.80 16 38 H 0.14 0.76 7.72 -2.39 -0.02 0.75 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.08 2.53 7.44 -2.38 -0.02 2.51 16 43 H 0.09 2.70 7.35 -2.39 -0.02 2.68 16 Total: -1.00 -78.72 360.70 5.93 -72.79 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 1.03 Total: 26.09 kcal Atomic # 6 Polarization: 39.81 SS G_CDS: 8.81 Total: 48.62 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -5.78 Total: -109.90 kcal Atomic # 8 Polarization: -78.75 SS G_CDS: -0.17 Total: -78.92 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -78.72 5.93 -72.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.706 kcal (2) G-P(sol) polarization free energy of solvation -78.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds