Wall clock time and date at job start Fri Apr 10 2020 18:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47211 * 2 1 4 4 N 1.46506 * 109.47523 * 180.02562 * 3 2 1 5 5 C 1.36801 * 120.00009 * 94.98689 * 4 3 2 6 6 H 1.08002 * 120.00163 * 218.53773 * 5 4 3 7 7 C 1.39042 * 120.00055 * 38.53715 * 5 4 3 8 8 N 1.31378 * 119.99835 * 19.22971 * 7 5 4 9 9 Si 1.86802 * 120.00086 * 199.23218 * 7 5 4 10 10 H 1.48491 * 109.47478 * 90.00034 * 9 7 5 11 11 H 1.48498 * 109.46887 * 210.00133 * 9 7 5 12 12 H 1.48502 * 109.46981 * 330.00068 * 9 7 5 13 13 C 1.34774 * 119.99585 * 274.71799 * 4 3 2 14 14 O 1.21824 * 119.99809 * 179.97438 * 13 4 3 15 15 C 1.41446 * 120.00621 * 359.97438 * 13 4 3 16 16 C 1.35443 * 120.00493 * 179.97438 * 15 13 4 17 17 C 1.46521 * 120.00118 * 174.67884 * 16 15 13 18 18 C 1.38379 * 120.97949 * 185.31311 * 17 16 15 19 19 N 1.35967 * 119.26891 * 179.97438 * 18 17 16 20 20 C 1.46504 * 119.25098 * 179.97438 * 19 18 17 21 21 C 1.34221 * 121.50289 * 359.97438 * 19 18 17 22 22 O 1.21565 * 118.90532 * 180.02562 * 21 19 18 23 23 N 1.34380 * 122.18567 * 0.02562 * 21 19 18 24 24 C 1.46508 * 119.75422 * 180.02562 * 23 21 19 25 25 C 1.34967 * 120.48620 * 359.71951 * 23 21 19 26 26 O 1.21676 * 120.74491 * 180.26549 * 25 23 21 27 27 H 1.09004 * 109.47162 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47119 * 299.99513 * 1 2 3 29 29 H 1.08998 * 109.47474 * 59.99629 * 1 2 3 30 30 H 1.09004 * 109.46807 * 239.99778 * 2 1 3 31 31 H 1.09004 * 109.46925 * 119.99964 * 2 1 3 32 32 H 1.09004 * 109.47417 * 60.00151 * 3 2 1 33 33 H 1.08998 * 109.47498 * 300.00073 * 3 2 1 34 34 H 0.97006 * 119.99461 * 179.97438 * 8 7 5 35 35 H 1.08001 * 119.99502 * 0.02562 * 15 13 4 36 36 H 1.08003 * 119.99757 * 354.68884 * 16 15 13 37 37 H 1.08007 * 120.36521 * 359.96193 * 18 17 16 38 38 H 1.09005 * 109.46825 * 0.02562 * 20 19 18 39 39 H 1.08997 * 109.47111 * 120.00278 * 20 19 18 40 40 H 1.09001 * 109.47148 * 240.00336 * 20 19 18 41 41 H 1.08992 * 109.46981 * 90.00250 * 24 23 21 42 42 H 1.09000 * 109.46629 * 209.99466 * 24 23 21 43 43 H 1.08999 * 109.47229 * 329.99613 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1885 1.5457 -1.1811 6 1 5.0921 0.9741 -1.3338 7 6 3.7200 2.3865 -2.1846 8 7 2.8721 3.3470 -1.8940 9 14 4.2961 2.1502 -3.9457 10 1 3.3796 1.2143 -4.6451 11 1 4.2956 3.4595 -4.6464 12 1 5.6710 1.5892 -3.9457 13 6 4.1793 1.3464 1.1624 14 8 5.3976 1.3459 1.1619 15 6 3.4726 1.2459 2.3835 16 6 4.1503 1.1488 3.5522 17 6 3.4230 1.1622 4.8241 18 6 4.0994 1.1741 6.0313 19 7 3.3896 1.1870 7.1909 20 6 4.1061 1.1989 8.4687 21 6 2.0474 1.1889 7.1916 22 8 1.4604 1.2011 8.2561 23 7 1.3309 1.1778 6.0548 24 6 -0.1328 1.1812 6.1177 25 6 1.9499 1.1699 4.8554 26 8 1.3058 1.1647 3.8231 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 2.5455 3.9338 -2.5940 35 1 2.3926 1.2459 2.3839 36 1 5.2268 1.0616 3.5466 37 1 5.1793 1.1730 6.0521 38 1 5.1802 1.1960 8.2830 39 1 3.8368 2.0950 9.0278 40 1 3.8343 0.3152 9.0459 41 1 -0.4939 2.2095 6.1221 42 1 -0.5349 0.6587 5.2498 43 1 -0.4585 0.6777 7.0280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056484903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:22 Heat of formation + Delta-G solvation = -34.946011 kcal Electronic energy + Delta-G solvation = -27550.427321 eV Core-core repulsion = 23597.995833 eV Total energy + Delta-G solvation = -3952.431488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32430 -39.30675 -38.56826 -37.50648 -35.44304 -35.25490 -33.66347 -32.69468 -31.13968 -30.23382 -28.44153 -27.10705 -25.93237 -24.99750 -23.80456 -23.53963 -21.45609 -20.75005 -19.63734 -18.07137 -17.40745 -17.32155 -17.22316 -16.72153 -15.96003 -15.77131 -15.07217 -15.04424 -14.90874 -14.35487 -13.81685 -13.74050 -13.58729 -13.53909 -13.35428 -13.09092 -12.97230 -12.61232 -12.49281 -12.37379 -11.81309 -11.76863 -11.56290 -11.29368 -11.26868 -11.07732 -10.92107 -10.61110 -10.29161 -10.24462 -9.98334 -9.84636 -9.76293 -9.67318 -8.89324 -8.27342 -7.67338 -7.34775 -6.32140 -3.91507 0.60618 1.70730 1.72230 2.38335 2.77140 3.20409 3.26910 3.32062 3.44195 4.07526 4.16653 4.36455 4.60243 4.65294 4.89536 4.99317 5.01469 5.12126 5.18099 5.19622 5.21821 5.32795 5.42823 5.53926 5.76385 5.84886 5.90538 6.01232 6.10183 6.16729 6.32491 6.49125 6.55983 6.63076 6.74874 6.96318 7.01820 7.08141 7.15745 7.36885 7.43411 7.59034 7.80289 8.32405 8.58660 9.24706 9.44794 10.12160 10.70343 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020836 B = 0.003345 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.476487 B = 8369.163734 C = 9313.646489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.103 3.897 4 N -0.424 5.424 5 C -0.301 4.301 6 H 0.093 0.907 7 C 0.036 3.964 8 N -0.862 5.862 9 Si 0.920 3.080 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.471 3.529 14 O -0.598 6.598 15 C -0.163 4.163 16 C -0.078 4.078 17 C -0.197 4.197 18 C 0.144 3.856 19 N -0.529 5.529 20 C 0.085 3.915 21 C 0.690 3.310 22 O -0.549 6.549 23 N -0.555 5.555 24 C 0.080 3.920 25 C 0.546 3.454 26 O -0.485 6.485 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.269 0.731 35 H 0.155 0.845 36 H 0.136 0.864 37 H 0.183 0.817 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 -4.493 17.712 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C -0.021 4.021 4 N -0.140 5.140 5 C -0.430 4.430 6 H 0.110 0.890 7 C -0.169 4.169 8 N -0.499 5.499 9 Si 0.746 3.254 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.192 1.192 13 C 0.264 3.736 14 O -0.485 6.485 15 C -0.184 4.184 16 C -0.100 4.100 17 C -0.206 4.206 18 C 0.021 3.979 19 N -0.248 5.248 20 C -0.057 4.057 21 C 0.393 3.607 22 O -0.424 6.424 23 N -0.299 5.299 24 C -0.061 4.061 25 C 0.341 3.659 26 O -0.358 6.358 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.172 0.828 36 H 0.154 0.846 37 H 0.200 0.800 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.703 -4.318 17.683 18.576 hybrid contribution 0.142 0.062 -0.866 0.880 sum -3.561 -4.256 16.817 17.709 Atomic orbital electron populations 1.21658 0.96365 1.00522 1.01572 1.21943 0.94977 0.99067 1.01553 1.21666 0.81841 0.94664 1.03939 1.43531 1.04812 1.60508 1.05112 1.19505 1.09830 1.23500 0.90120 0.88974 1.25474 0.97067 0.93619 1.00721 1.69920 1.31650 1.14607 1.33679 0.86031 0.79543 0.77713 0.82088 1.20228 1.20928 1.19200 1.17148 0.87805 0.84264 0.84352 1.90629 1.13841 1.56600 1.87448 1.23358 1.03451 0.98049 0.93514 1.21327 0.98791 1.01656 0.88250 1.20678 0.90562 1.15149 0.94229 1.22822 0.98515 0.93278 0.83296 1.44229 1.04980 1.66739 1.08806 1.22067 0.96683 1.04483 0.82443 1.15679 0.81394 0.79090 0.84512 1.90985 1.68095 1.54841 1.28448 1.46345 1.10201 1.67080 1.06266 1.21915 0.75296 1.03992 1.04915 1.18854 0.88638 0.76005 0.82448 1.90719 1.67339 1.46939 1.30757 0.93632 0.92840 0.92971 0.92038 0.92960 0.92662 0.87590 0.92064 0.82763 0.84640 0.79989 0.88628 0.90119 0.90122 0.90824 0.88702 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.91 37.16 0.37 -1.98 16 2 C -0.14 -2.72 6.11 -26.74 -0.16 -2.88 16 3 C 0.10 2.40 4.55 -4.04 -0.02 2.39 16 4 N -0.42 -11.31 2.52 -118.11 -0.30 -11.60 16 5 C -0.30 -8.55 8.88 -15.04 -0.13 -8.68 16 6 H 0.09 2.71 7.78 -52.49 -0.41 2.30 16 7 C 0.04 0.98 4.95 -17.45 -0.09 0.89 16 8 N -0.86 -23.62 11.47 55.50 0.64 -22.99 16 9 Si 0.92 20.75 29.60 -169.99 -5.03 15.72 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 13 C 0.47 12.34 7.36 -15.04 -0.11 12.23 16 14 O -0.60 -17.28 15.99 5.08 0.08 -17.20 16 15 C -0.16 -3.50 7.94 -39.36 -0.31 -3.81 16 16 C -0.08 -1.37 9.42 -37.24 -0.35 -1.72 16 17 C -0.20 -2.75 6.04 -102.80 -0.62 -3.37 16 18 C 0.14 1.36 10.20 -15.67 -0.16 1.20 16 19 N -0.53 -4.94 2.98 -128.40 -0.38 -5.32 16 20 C 0.08 0.45 9.94 59.85 0.59 1.05 16 21 C 0.69 8.42 8.09 -87.77 -0.71 7.71 16 22 O -0.55 -7.52 15.62 5.31 0.08 -7.44 16 23 N -0.55 -7.17 2.96 -129.58 -0.38 -7.55 16 24 C 0.08 0.84 10.11 59.85 0.61 1.44 16 25 C 0.55 8.29 7.60 -12.47 -0.09 8.19 16 26 O -0.48 -8.63 13.23 5.21 0.07 -8.56 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.05 1.04 7.62 -51.93 -0.40 0.64 16 32 H 0.06 1.27 6.36 -51.93 -0.33 0.94 16 33 H 0.11 2.67 5.57 -51.93 -0.29 2.38 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.16 3.29 2.76 -52.50 -0.14 3.15 16 36 H 0.14 2.30 7.46 -52.48 -0.39 1.91 16 37 H 0.18 1.01 7.84 -52.48 -0.41 0.60 16 38 H 0.10 0.21 7.72 -51.93 -0.40 -0.19 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.98 7.44 -51.93 -0.39 0.59 16 43 H 0.09 0.85 7.35 -51.93 -0.38 0.47 16 LS Contribution 359.99 15.07 5.43 5.43 Total: -1.00 -35.90 359.99 -6.63 -42.53 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.63 Total: 4.33 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: -1.19 Total: 12.66 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.43 Total: -47.46 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: 0.23 Total: -33.19 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.90 -6.63 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.585 kcal (2) G-P(sol) polarization free energy of solvation -35.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds