Wall clock time and date at job start Fri Apr 10 2020 18:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47211 * 2 1 4 4 N 1.46506 * 109.47523 * 180.02562 * 3 2 1 5 5 C 1.36801 * 120.00009 * 94.98689 * 4 3 2 6 6 H 1.08002 * 120.00163 * 218.53773 * 5 4 3 7 7 C 1.39042 * 120.00055 * 38.53715 * 5 4 3 8 8 N 1.31378 * 119.99835 * 19.22971 * 7 5 4 9 9 Si 1.86802 * 120.00086 * 199.23218 * 7 5 4 10 10 H 1.48491 * 109.47478 * 90.00034 * 9 7 5 11 11 H 1.48498 * 109.46887 * 210.00133 * 9 7 5 12 12 H 1.48502 * 109.46981 * 330.00068 * 9 7 5 13 13 C 1.34774 * 119.99585 * 274.71799 * 4 3 2 14 14 O 1.21824 * 119.99809 * 179.97438 * 13 4 3 15 15 C 1.41446 * 120.00621 * 359.97438 * 13 4 3 16 16 C 1.35443 * 120.00493 * 179.97438 * 15 13 4 17 17 C 1.46521 * 120.00118 * 174.67884 * 16 15 13 18 18 C 1.38379 * 120.97949 * 185.31311 * 17 16 15 19 19 N 1.35967 * 119.26891 * 179.97438 * 18 17 16 20 20 C 1.46504 * 119.25098 * 179.97438 * 19 18 17 21 21 C 1.34221 * 121.50289 * 359.97438 * 19 18 17 22 22 O 1.21565 * 118.90532 * 180.02562 * 21 19 18 23 23 N 1.34380 * 122.18567 * 0.02562 * 21 19 18 24 24 C 1.46508 * 119.75422 * 180.02562 * 23 21 19 25 25 C 1.34967 * 120.48620 * 359.71951 * 23 21 19 26 26 O 1.21676 * 120.74491 * 180.26549 * 25 23 21 27 27 H 1.09004 * 109.47162 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47119 * 299.99513 * 1 2 3 29 29 H 1.08998 * 109.47474 * 59.99629 * 1 2 3 30 30 H 1.09004 * 109.46807 * 239.99778 * 2 1 3 31 31 H 1.09004 * 109.46925 * 119.99964 * 2 1 3 32 32 H 1.09004 * 109.47417 * 60.00151 * 3 2 1 33 33 H 1.08998 * 109.47498 * 300.00073 * 3 2 1 34 34 H 0.97006 * 119.99461 * 179.97438 * 8 7 5 35 35 H 1.08001 * 119.99502 * 0.02562 * 15 13 4 36 36 H 1.08003 * 119.99757 * 354.68884 * 16 15 13 37 37 H 1.08007 * 120.36521 * 359.96193 * 18 17 16 38 38 H 1.09005 * 109.46825 * 0.02562 * 20 19 18 39 39 H 1.08997 * 109.47111 * 120.00278 * 20 19 18 40 40 H 1.09001 * 109.47148 * 240.00336 * 20 19 18 41 41 H 1.08992 * 109.46981 * 90.00250 * 24 23 21 42 42 H 1.09000 * 109.46629 * 209.99466 * 24 23 21 43 43 H 1.08999 * 109.47229 * 329.99613 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1885 1.5457 -1.1811 6 1 5.0921 0.9741 -1.3338 7 6 3.7200 2.3865 -2.1846 8 7 2.8721 3.3470 -1.8940 9 14 4.2961 2.1502 -3.9457 10 1 3.3796 1.2143 -4.6451 11 1 4.2956 3.4595 -4.6464 12 1 5.6710 1.5892 -3.9457 13 6 4.1793 1.3464 1.1624 14 8 5.3976 1.3459 1.1619 15 6 3.4726 1.2459 2.3835 16 6 4.1503 1.1488 3.5522 17 6 3.4230 1.1622 4.8241 18 6 4.0994 1.1741 6.0313 19 7 3.3896 1.1870 7.1909 20 6 4.1061 1.1989 8.4687 21 6 2.0474 1.1889 7.1916 22 8 1.4604 1.2011 8.2561 23 7 1.3309 1.1778 6.0548 24 6 -0.1328 1.1812 6.1177 25 6 1.9499 1.1699 4.8554 26 8 1.3058 1.1647 3.8231 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 2.5455 3.9338 -2.5940 35 1 2.3926 1.2459 2.3839 36 1 5.2268 1.0616 3.5466 37 1 5.1793 1.1730 6.0521 38 1 5.1802 1.1960 8.2830 39 1 3.8368 2.0950 9.0278 40 1 3.8343 0.3152 9.0459 41 1 -0.4939 2.2095 6.1221 42 1 -0.5349 0.6587 5.2498 43 1 -0.4585 0.6777 7.0280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056484903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:21 Heat of formation + Delta-G solvation = -59.085376 kcal Electronic energy + Delta-G solvation = -27551.474082 eV Core-core repulsion = 23597.995833 eV Total energy + Delta-G solvation = -3953.478249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.32374 -40.69891 -40.13915 -38.49817 -37.15821 -36.49502 -35.03284 -34.43302 -32.99456 -31.42652 -29.39867 -28.02278 -27.58427 -26.61791 -25.04338 -24.65915 -22.87805 -22.36051 -20.86138 -19.52045 -18.76919 -18.47028 -18.43485 -18.27282 -17.50576 -16.82484 -16.67939 -16.19205 -15.94358 -15.90392 -15.49549 -15.37135 -14.95726 -14.74797 -14.59391 -14.24211 -14.05522 -13.88573 -13.43037 -13.39293 -13.31590 -13.23485 -13.06176 -12.98988 -12.60805 -12.56489 -12.29136 -12.09792 -12.06563 -11.99244 -11.55865 -11.13863 -11.05009 -10.90267 -10.81905 -10.23735 -9.42655 -8.86638 -8.32207 -6.04434 -0.45761 0.58118 0.84229 1.06225 1.40923 1.43518 1.54377 1.80367 2.29397 2.32449 2.72474 3.12042 3.17236 3.24651 3.61942 3.98272 4.13254 4.18139 4.23711 4.31045 4.32348 4.35827 4.37103 4.51161 4.56959 4.67293 4.68541 4.72603 4.86300 4.90347 4.98030 5.07272 5.11142 5.17794 5.24717 5.38315 5.45072 5.55273 5.58299 5.73795 6.06697 6.25173 6.37207 6.60786 6.75949 7.21282 7.49132 8.14570 8.69783 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020836 B = 0.003345 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.476487 B = 8369.163734 C = 9313.646489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.114 3.886 4 N -0.446 5.446 5 C -0.341 4.341 6 H 0.066 0.934 7 C 0.001 3.999 8 N -0.890 5.890 9 Si 0.987 3.013 10 H -0.262 1.262 11 H -0.274 1.274 12 H -0.271 1.271 13 C 0.471 3.529 14 O -0.642 6.642 15 C -0.238 4.238 16 C -0.006 4.006 17 C -0.267 4.267 18 C 0.234 3.766 19 N -0.520 5.520 20 C 0.071 3.929 21 C 0.685 3.315 22 O -0.560 6.560 23 N -0.557 5.557 24 C 0.076 3.924 25 C 0.540 3.460 26 O -0.524 6.524 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.274 0.726 35 H 0.154 0.846 36 H 0.144 0.856 37 H 0.242 0.758 38 H 0.141 0.859 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 -5.022 20.900 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C -0.009 4.009 4 N -0.162 5.162 5 C -0.470 4.470 6 H 0.084 0.916 7 C -0.202 4.202 8 N -0.527 5.527 9 Si 0.810 3.190 10 H -0.187 1.187 11 H -0.199 1.199 12 H -0.196 1.196 13 C 0.266 3.734 14 O -0.533 6.533 15 C -0.259 4.259 16 C -0.028 4.028 17 C -0.276 4.276 18 C 0.107 3.893 19 N -0.235 5.235 20 C -0.067 4.067 21 C 0.388 3.612 22 O -0.435 6.435 23 N -0.300 5.300 24 C -0.065 4.065 25 C 0.337 3.663 26 O -0.400 6.400 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.171 0.829 36 H 0.162 0.838 37 H 0.258 0.742 38 H 0.159 0.841 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.004 -4.851 20.949 21.712 hybrid contribution 0.009 0.214 -1.209 1.228 sum -2.995 -4.637 19.740 20.498 Atomic orbital electron populations 1.21588 0.93421 1.02305 1.01814 1.21816 0.97394 0.96563 1.00726 1.21574 0.80420 0.96521 1.02411 1.43694 1.05858 1.61663 1.04966 1.19449 1.10349 1.25032 0.92133 0.91590 1.26266 0.96950 0.92678 1.04279 1.70005 1.32588 1.15125 1.34980 0.85042 0.78927 0.78081 0.76958 1.18690 1.19922 1.19600 1.17859 0.87535 0.82268 0.85733 1.90549 1.15597 1.58753 1.88396 1.22953 1.03313 1.06867 0.92739 1.21564 0.99040 0.93520 0.88645 1.20298 0.90158 1.22785 0.94377 1.23633 1.00500 0.83671 0.81526 1.44703 1.04342 1.64054 1.10438 1.22568 0.98787 1.05040 0.80343 1.15924 0.82428 0.78861 0.83959 1.90991 1.68648 1.55135 1.28751 1.46429 1.11109 1.66436 1.05997 1.22044 0.74423 1.04631 1.05354 1.19064 0.89251 0.75581 0.82442 1.90693 1.68096 1.49160 1.32073 0.91018 0.92538 0.92748 0.93221 0.93254 0.93126 0.89707 0.91605 0.82942 0.83807 0.74221 0.84066 0.89750 0.89524 0.90132 0.88971 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.91 71.98 0.71 -3.71 16 2 C -0.13 -5.29 6.11 30.59 0.19 -5.10 16 3 C 0.11 5.70 4.55 86.38 0.39 6.09 16 4 N -0.45 -25.47 2.52 -645.75 -1.62 -27.09 16 5 C -0.34 -20.67 8.88 84.11 0.75 -19.92 16 6 H 0.07 4.20 7.78 -2.91 -0.02 4.18 16 7 C 0.00 0.05 4.95 84.95 0.42 0.47 16 8 N -0.89 -50.90 11.47 21.68 0.25 -50.65 16 9 Si 0.99 44.03 29.60 68.60 2.03 46.06 16 10 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 C 0.47 26.21 7.36 85.03 0.63 26.84 16 14 O -0.64 -39.12 15.99 -4.74 -0.08 -39.19 16 15 C -0.24 -10.71 7.94 22.41 0.18 -10.53 16 16 C -0.01 -0.19 9.42 23.78 0.22 0.03 16 17 C -0.27 -6.77 6.04 -18.68 -0.11 -6.89 16 18 C 0.23 3.05 10.20 84.09 0.86 3.91 16 19 N -0.52 -6.90 2.98 -678.73 -2.02 -8.92 16 20 C 0.07 0.31 9.94 127.77 1.27 1.58 16 21 C 0.68 14.41 8.09 179.35 1.45 15.86 16 22 O -0.56 -13.56 15.62 -3.92 -0.06 -13.62 16 23 N -0.56 -13.45 2.96 -800.50 -2.37 -15.82 16 24 C 0.08 1.53 10.11 127.77 1.29 2.83 16 25 C 0.54 15.99 7.60 86.61 0.66 16.64 16 26 O -0.52 -19.27 13.23 -4.27 -0.06 -19.33 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 2.07 7.62 -2.38 -0.02 2.05 16 32 H 0.05 2.51 6.36 -2.39 -0.02 2.49 16 33 H 0.08 4.55 5.57 -2.39 -0.01 4.54 16 34 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 35 H 0.15 6.92 2.76 -3.21 -0.01 6.91 16 36 H 0.14 4.60 7.46 -2.91 -0.02 4.58 16 37 H 0.24 0.51 7.84 -2.91 -0.02 0.49 16 38 H 0.14 -0.57 7.72 -2.38 -0.02 -0.59 16 39 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.09 1.91 7.44 -2.39 -0.02 1.90 16 43 H 0.10 1.79 7.35 -2.39 -0.02 1.77 16 Total: -1.00 -87.20 359.99 6.02 -81.19 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.04 Total: 19.26 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 8.91 Total: 28.11 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -5.77 Total: -102.48 kcal Atomic # 8 Polarization: -71.95 SS G_CDS: -0.19 Total: -72.14 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -87.20 6.02 -81.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.100 kcal (2) G-P(sol) polarization free energy of solvation -87.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds