Wall clock time and date at job start Fri Apr 10 2020 18:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33645 * 125.80075 * 2 1 4 4 C 1.34217 * 110.90985 * 180.02562 * 3 2 1 5 5 C 1.34178 * 109.12279 * 359.74748 * 4 3 2 6 6 C 1.36413 * 125.79757 * 180.02562 * 2 1 3 7 7 C 1.47374 * 127.19696 * 359.93744 * 6 2 1 8 8 O 1.21615 * 120.00131 * 313.66460 * 7 6 2 9 9 N 1.34773 * 120.00358 * 133.66131 * 7 6 2 10 10 C 1.47080 * 120.88519 * 183.94971 * 9 7 6 11 11 C 1.53692 * 108.27634 * 128.75705 * 10 9 7 12 12 N 1.46899 * 109.25899 * 54.08678 * 11 10 9 13 13 C 1.46901 * 111.00251 * 172.60849 * 12 11 10 14 14 C 1.50703 * 109.47034 * 294.30132 * 13 12 11 15 15 O 1.21293 * 119.99824 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00064 * 180.02562 * 14 13 12 17 17 C 1.37102 * 119.99995 * 179.97438 * 16 14 13 18 18 H 1.07994 * 120.00047 * 359.97438 * 17 16 14 19 19 C 1.38955 * 119.99683 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99288 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00300 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47141 * 89.99717 * 21 19 17 23 23 H 1.48499 * 109.47123 * 210.00102 * 21 19 17 24 24 H 1.48498 * 109.46788 * 329.99971 * 21 19 17 25 25 C 1.46903 * 111.26419 * 296.75508 * 12 11 10 26 26 C 1.47085 * 120.88030 * 4.22994 * 9 7 6 27 27 H 1.09005 * 109.46805 * 269.97053 * 1 2 3 28 28 H 1.08998 * 109.47310 * 29.97224 * 1 2 3 29 29 H 1.08999 * 109.47465 * 149.97072 * 1 2 3 30 30 H 1.07995 * 125.44430 * 180.02562 * 4 3 2 31 31 H 1.08005 * 127.02730 * 180.26921 * 5 4 3 32 32 H 1.09005 * 109.62900 * 248.52710 * 10 9 7 33 33 H 1.09001 * 109.62532 * 9.10489 * 10 9 7 34 34 H 1.09003 * 109.64901 * 294.07640 * 11 10 9 35 35 H 1.09008 * 109.42017 * 173.94741 * 11 10 9 36 36 H 1.09001 * 109.47226 * 54.29771 * 13 12 11 37 37 H 1.08994 * 109.47236 * 174.29972 * 13 12 11 38 38 H 0.97008 * 120.00114 * 359.97438 * 16 14 13 39 39 H 0.96998 * 119.99365 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.49485 * 303.14357 * 25 12 11 41 41 H 1.09003 * 109.48976 * 183.06696 * 25 12 11 42 42 H 1.08997 * 109.62394 * 350.89765 * 26 9 7 43 43 H 1.09003 * 109.62635 * 111.47352 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0839 0.0000 4 6 3.5859 0.7390 -0.0006 5 6 3.6849 -0.5991 0.0046 6 6 2.3050 -1.1064 -0.0005 7 6 1.8739 -2.5157 0.0002 8 8 1.0014 -2.8844 0.7629 9 7 2.4466 -3.3960 -0.8445 10 6 1.9730 -4.7864 -0.9213 11 6 1.7057 -5.1237 -2.3967 12 7 2.9104 -4.8341 -3.1859 13 6 2.7594 -5.3048 -4.5693 14 6 2.6672 -6.8090 -4.5808 15 8 2.7224 -7.4280 -3.5392 16 7 2.5245 -7.4664 -5.7486 17 6 2.4411 -8.8348 -5.7592 18 1 2.4903 -9.3860 -4.8318 19 6 2.2934 -9.5125 -6.9633 20 7 2.2131 -10.8242 -6.9732 21 14 2.2077 -8.5592 -8.5673 22 1 3.5770 -8.3897 -9.1163 23 1 1.3722 -9.3051 -9.5424 24 1 1.6056 -7.2248 -8.3184 25 6 3.2398 -3.4029 -3.1498 26 6 3.5659 -2.9935 -1.7097 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 4.4173 1.4284 -0.0003 31 1 4.5928 -1.1841 0.0097 32 1 2.7352 -5.4554 -0.5218 33 1 1.0522 -4.8917 -0.3476 34 1 0.8755 -4.5214 -2.7659 35 1 1.4570 -6.1811 -2.4875 36 1 1.8517 -4.8819 -4.9999 37 1 3.6215 -4.9891 -5.1566 38 1 2.4807 -6.9713 -6.5817 39 1 2.1096 -11.2972 -7.8137 40 1 2.3883 -2.8246 -3.5084 41 1 4.1036 -3.2124 -3.7867 42 1 3.6988 -1.9129 -1.6573 43 1 4.4783 -3.4935 -1.3845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066495647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:24 Heat of formation + Delta-G solvation = -27.531678 kcal Electronic energy + Delta-G solvation = -27030.881510 eV Core-core repulsion = 23078.771531 eV Total energy + Delta-G solvation = -3952.109978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.89418 -40.09015 -38.74285 -37.33974 -34.63487 -33.85100 -33.37376 -32.25477 -31.70159 -31.01725 -29.10437 -27.27149 -25.85624 -24.13469 -23.82813 -22.93912 -21.61109 -20.56381 -19.40265 -18.93387 -18.32415 -17.79257 -16.80048 -16.34177 -16.09702 -15.89777 -15.29464 -15.13771 -15.06266 -14.59320 -14.51313 -14.12923 -14.03045 -13.54701 -13.41407 -13.31408 -13.24437 -13.20984 -12.79342 -12.56936 -12.33954 -12.07279 -11.90460 -11.69690 -11.45727 -11.26294 -11.06447 -10.95991 -10.61838 -10.21370 -10.00006 -9.85777 -9.55965 -8.98403 -8.83603 -8.48192 -8.20395 -8.02560 -6.33108 -3.84577 1.20230 1.78152 2.48297 2.74395 3.00118 3.00398 3.04785 3.13331 3.69879 3.84851 4.08226 4.17942 4.36957 4.62131 4.68320 4.83014 4.86363 4.99682 5.10284 5.15530 5.19321 5.22476 5.23044 5.29692 5.39511 5.43000 5.54506 5.60986 5.71000 5.72698 5.78042 5.78904 5.88790 5.95433 6.09867 6.16549 6.47558 6.70997 7.02509 7.20429 7.33722 7.56065 8.05329 8.12347 8.57676 8.93030 9.40134 9.80330 10.79955 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.002518 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.305049 B =11118.371518 C =11396.145563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.061 3.939 3 O -0.176 6.176 4 C -0.037 4.037 5 C -0.189 4.189 6 C -0.235 4.235 7 C 0.589 3.411 8 O -0.541 6.541 9 N -0.603 5.603 10 C 0.121 3.879 11 C 0.040 3.960 12 N -0.515 5.515 13 C 0.044 3.956 14 C 0.452 3.548 15 O -0.559 6.559 16 N -0.590 5.590 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.040 3.960 26 C 0.108 3.892 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.208 0.792 31 H 0.159 0.841 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.028 0.972 35 H 0.117 0.883 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.035 0.965 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.785 25.775 8.463 27.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.009 3.991 3 O -0.073 6.073 4 C -0.103 4.103 5 C -0.208 4.208 6 C -0.239 4.239 7 C 0.377 3.623 8 O -0.419 6.419 9 N -0.336 5.336 10 C -0.001 4.001 11 C -0.088 4.088 12 N -0.239 5.239 13 C -0.088 4.088 14 C 0.237 3.763 15 O -0.441 6.441 16 N -0.230 5.230 17 C -0.433 4.433 18 H 0.138 0.862 19 C -0.162 4.162 20 N -0.520 5.520 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.089 4.089 26 C -0.016 4.016 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.225 0.775 31 H 0.177 0.823 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.046 0.954 35 H 0.134 0.866 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.619 24.958 9.659 26.811 hybrid contribution -0.289 0.859 -1.955 2.155 sum 1.330 25.817 7.704 26.975 Atomic orbital electron populations 1.20437 0.84064 1.04269 1.04524 1.22632 0.93943 0.83042 0.99529 1.83752 1.17105 1.34823 1.71577 1.23874 0.83561 0.96311 1.06534 1.22893 0.96491 0.94373 1.07025 1.21133 0.93684 0.93852 1.15219 1.17302 0.81185 0.83818 0.79949 1.90789 1.32248 1.79243 1.39621 1.48099 1.34555 1.11380 1.39545 1.21879 1.01290 0.80244 0.96684 1.22759 0.89713 1.04215 0.92160 1.61516 1.37028 1.14271 1.11120 1.21885 1.01378 0.95689 0.89811 1.19614 0.84006 0.88104 0.84538 1.90528 1.53708 1.68433 1.31399 1.42219 1.66317 1.07806 1.06610 1.19427 1.47415 0.79491 0.96989 0.86221 1.25044 0.97631 0.95531 0.97957 1.69622 1.48781 1.06220 1.27423 0.86673 0.78899 0.79786 0.84020 1.19601 1.20199 1.19560 1.22503 1.00859 0.88823 0.96710 1.22076 0.89393 1.00914 0.89169 0.88987 0.90142 0.88959 0.77497 0.82319 0.90087 0.88805 0.95409 0.86556 0.93352 0.89066 0.79734 0.91598 0.94723 0.89502 0.88699 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.04 36.01 0.36 -0.26 16 2 C 0.06 0.62 7.37 -34.96 -0.26 0.36 16 3 O -0.18 -1.60 10.52 7.67 0.08 -1.52 16 4 C -0.04 -0.26 12.03 29.30 0.35 0.10 16 5 C -0.19 -1.58 8.75 -37.45 -0.33 -1.91 16 6 C -0.23 -2.65 5.33 -103.27 -0.55 -3.20 16 7 C 0.59 8.17 7.25 -12.54 -0.09 8.08 16 8 O -0.54 -9.10 16.35 5.26 0.09 -9.01 16 9 N -0.60 -7.88 3.00 -173.47 -0.52 -8.40 16 10 C 0.12 1.76 6.62 -3.37 -0.02 1.74 16 11 C 0.04 0.63 5.27 -3.47 -0.02 0.61 16 12 N -0.51 -7.85 4.37 -235.47 -1.03 -8.87 16 13 C 0.04 0.70 5.45 -4.97 -0.03 0.67 16 14 C 0.45 9.90 7.44 -10.99 -0.08 9.82 16 15 O -0.56 -14.35 13.91 5.55 0.08 -14.27 16 16 N -0.59 -13.71 5.09 -10.96 -0.06 -13.76 16 17 C -0.30 -8.46 10.16 -14.93 -0.15 -8.61 16 18 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 19 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -25.49 13.96 55.50 0.77 -24.72 16 21 Si 0.88 19.08 27.74 -169.99 -4.71 14.36 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 25 C 0.04 0.46 5.62 -3.70 -0.02 0.43 16 26 C 0.11 1.13 6.02 -3.60 -0.02 1.11 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.83 7.93 -51.93 -0.41 0.41 16 30 H 0.21 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.16 1.05 7.60 -52.48 -0.40 0.65 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.39 7.09 -51.93 -0.37 1.02 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.12 2.20 5.77 -51.92 -0.30 1.90 16 36 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 37 H 0.09 1.25 7.97 -51.93 -0.41 0.83 16 38 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.82 7.99 -51.93 -0.41 0.41 16 42 H 0.10 0.82 4.55 -51.93 -0.24 0.58 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 353.91 15.07 5.33 5.33 Total: -1.00 -34.79 353.91 -6.64 -41.42 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.72 Total: 9.48 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -0.95 Total: 9.95 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.83 Total: -55.75 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: 0.24 Total: -24.80 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.79 -6.64 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066495647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.890 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds