Wall clock time and date at job start Fri Apr 10 2020 18:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33645 * 125.80075 * 2 1 4 4 C 1.34217 * 110.90985 * 180.02562 * 3 2 1 5 5 C 1.34178 * 109.12279 * 359.74748 * 4 3 2 6 6 C 1.36413 * 125.79757 * 180.02562 * 2 1 3 7 7 C 1.47374 * 127.19696 * 359.93744 * 6 2 1 8 8 O 1.21615 * 120.00131 * 313.66460 * 7 6 2 9 9 N 1.34773 * 120.00358 * 133.66131 * 7 6 2 10 10 C 1.47080 * 120.88519 * 183.94971 * 9 7 6 11 11 C 1.53692 * 108.27634 * 128.75705 * 10 9 7 12 12 N 1.46899 * 109.25899 * 54.08678 * 11 10 9 13 13 C 1.46901 * 111.00251 * 172.60849 * 12 11 10 14 14 C 1.50703 * 109.47034 * 294.30132 * 13 12 11 15 15 O 1.21293 * 119.99824 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00064 * 180.02562 * 14 13 12 17 17 C 1.37102 * 119.99995 * 179.97438 * 16 14 13 18 18 H 1.07994 * 120.00047 * 359.97438 * 17 16 14 19 19 C 1.38955 * 119.99683 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99288 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00300 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47141 * 89.99717 * 21 19 17 23 23 H 1.48499 * 109.47123 * 210.00102 * 21 19 17 24 24 H 1.48498 * 109.46788 * 329.99971 * 21 19 17 25 25 C 1.46903 * 111.26419 * 296.75508 * 12 11 10 26 26 C 1.47085 * 120.88030 * 4.22994 * 9 7 6 27 27 H 1.09005 * 109.46805 * 269.97053 * 1 2 3 28 28 H 1.08998 * 109.47310 * 29.97224 * 1 2 3 29 29 H 1.08999 * 109.47465 * 149.97072 * 1 2 3 30 30 H 1.07995 * 125.44430 * 180.02562 * 4 3 2 31 31 H 1.08005 * 127.02730 * 180.26921 * 5 4 3 32 32 H 1.09005 * 109.62900 * 248.52710 * 10 9 7 33 33 H 1.09001 * 109.62532 * 9.10489 * 10 9 7 34 34 H 1.09003 * 109.64901 * 294.07640 * 11 10 9 35 35 H 1.09008 * 109.42017 * 173.94741 * 11 10 9 36 36 H 1.09001 * 109.47226 * 54.29771 * 13 12 11 37 37 H 1.08994 * 109.47236 * 174.29972 * 13 12 11 38 38 H 0.97008 * 120.00114 * 359.97438 * 16 14 13 39 39 H 0.96998 * 119.99365 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.49485 * 303.14357 * 25 12 11 41 41 H 1.09003 * 109.48976 * 183.06696 * 25 12 11 42 42 H 1.08997 * 109.62394 * 350.89765 * 26 9 7 43 43 H 1.09003 * 109.62635 * 111.47352 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0839 0.0000 4 6 3.5859 0.7390 -0.0006 5 6 3.6849 -0.5991 0.0046 6 6 2.3050 -1.1064 -0.0005 7 6 1.8739 -2.5157 0.0002 8 8 1.0014 -2.8844 0.7629 9 7 2.4466 -3.3960 -0.8445 10 6 1.9730 -4.7864 -0.9213 11 6 1.7057 -5.1237 -2.3967 12 7 2.9104 -4.8341 -3.1859 13 6 2.7594 -5.3048 -4.5693 14 6 2.6672 -6.8090 -4.5808 15 8 2.7224 -7.4280 -3.5392 16 7 2.5245 -7.4664 -5.7486 17 6 2.4411 -8.8348 -5.7592 18 1 2.4903 -9.3860 -4.8318 19 6 2.2934 -9.5125 -6.9633 20 7 2.2131 -10.8242 -6.9732 21 14 2.2077 -8.5592 -8.5673 22 1 3.5770 -8.3897 -9.1163 23 1 1.3722 -9.3051 -9.5424 24 1 1.6056 -7.2248 -8.3184 25 6 3.2398 -3.4029 -3.1498 26 6 3.5659 -2.9935 -1.7097 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 4.4173 1.4284 -0.0003 31 1 4.5928 -1.1841 0.0097 32 1 2.7352 -5.4554 -0.5218 33 1 1.0522 -4.8917 -0.3476 34 1 0.8755 -4.5214 -2.7659 35 1 1.4570 -6.1811 -2.4875 36 1 1.8517 -4.8819 -4.9999 37 1 3.6215 -4.9891 -5.1566 38 1 2.4807 -6.9713 -6.5817 39 1 2.1096 -11.2972 -7.8137 40 1 2.3883 -2.8246 -3.5084 41 1 4.1036 -3.2124 -3.7867 42 1 3.6988 -1.9129 -1.6573 43 1 4.4783 -3.4935 -1.3845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066495647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:23 Heat of formation + Delta-G solvation = -54.751807 kcal Electronic energy + Delta-G solvation = -27032.061863 eV Core-core repulsion = 23078.771531 eV Total energy + Delta-G solvation = -3953.290332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.55821 -41.21094 -40.30422 -38.66414 -36.12363 -35.48199 -34.16125 -33.73113 -32.88740 -32.03914 -30.36437 -28.12340 -27.25231 -25.52753 -24.99359 -23.91732 -22.37234 -21.56775 -21.23519 -20.20898 -19.76109 -18.66712 -17.73362 -17.63199 -17.16716 -16.84354 -16.80949 -16.48792 -16.17915 -15.91980 -15.53686 -15.40231 -15.27239 -14.97261 -14.44630 -14.39992 -14.33478 -14.00138 -13.91068 -13.84357 -13.70975 -13.22193 -13.00605 -12.80242 -12.72048 -12.42529 -12.39855 -12.30059 -12.15783 -11.96773 -11.46241 -11.21952 -10.65586 -10.41154 -10.22318 -9.86075 -9.51662 -9.24146 -8.39851 -6.00443 0.43834 1.15061 1.30841 1.36610 1.45279 1.69757 1.89523 1.97484 2.07829 2.24166 2.60051 3.14343 3.19841 3.47027 3.64183 3.86411 3.94572 3.98561 4.08864 4.17007 4.23538 4.29995 4.35872 4.44831 4.50507 4.54614 4.55891 4.63266 4.69341 4.77028 4.80235 4.84079 4.86623 5.01749 5.16004 5.34037 5.41441 5.54067 5.82284 5.97802 6.06015 6.11260 6.33935 6.61291 6.90407 7.00875 7.41824 7.99191 8.77876 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.002518 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.305049 B =11118.371518 C =11396.145563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.055 3.945 3 O -0.179 6.179 4 C -0.019 4.019 5 C -0.201 4.201 6 C -0.262 4.262 7 C 0.586 3.414 8 O -0.582 6.582 9 N -0.602 5.602 10 C 0.128 3.872 11 C 0.050 3.950 12 N -0.533 5.533 13 C 0.056 3.944 14 C 0.451 3.549 15 O -0.604 6.604 16 N -0.592 5.592 17 C -0.325 4.325 18 H 0.055 0.945 19 C -0.017 4.017 20 N -0.936 5.936 21 Si 0.966 3.034 22 H -0.256 1.256 23 H -0.278 1.278 24 H -0.231 1.231 25 C 0.042 3.958 26 C 0.107 3.893 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.252 0.748 31 H 0.176 0.824 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.130 0.870 38 H 0.389 0.611 39 H 0.278 0.722 40 H 0.043 0.957 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.162 30.637 6.330 31.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.003 3.997 3 O -0.075 6.075 4 C -0.084 4.084 5 C -0.220 4.220 6 C -0.266 4.266 7 C 0.377 3.623 8 O -0.464 6.464 9 N -0.334 5.334 10 C 0.005 3.995 11 C -0.079 4.079 12 N -0.258 5.258 13 C -0.075 4.075 14 C 0.238 3.762 15 O -0.488 6.488 16 N -0.234 5.234 17 C -0.455 4.455 18 H 0.073 0.927 19 C -0.215 4.215 20 N -0.577 5.577 21 Si 0.786 3.214 22 H -0.180 1.180 23 H -0.203 1.203 24 H -0.154 1.154 25 C -0.086 4.086 26 C -0.015 4.015 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.268 0.732 31 H 0.193 0.807 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.148 0.852 38 H 0.225 0.775 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.022 29.869 7.526 30.950 hybrid contribution -0.678 -0.664 -1.111 1.461 sum 2.344 29.204 6.415 29.992 Atomic orbital electron populations 1.20472 0.83389 1.04727 1.04772 1.22869 0.94667 0.83111 0.99085 1.83785 1.18057 1.34339 1.71356 1.24723 0.83447 0.96580 1.03633 1.23095 0.95614 0.95187 1.08131 1.21091 0.95776 0.92374 1.17348 1.17739 0.80438 0.84951 0.79188 1.90757 1.34164 1.80161 1.41305 1.48153 1.35066 1.10381 1.39798 1.21604 1.00504 0.81483 0.95897 1.22490 0.90602 1.01804 0.93018 1.61462 1.36464 1.17267 1.10652 1.21834 1.04308 0.90321 0.91034 1.20894 0.81087 0.90900 0.83271 1.90525 1.54745 1.70393 1.33157 1.42039 1.67270 1.06034 1.08078 1.18988 1.49436 0.81776 0.95265 0.92681 1.26126 0.96185 0.96589 1.02632 1.69812 1.50019 1.08796 1.29074 0.85356 0.79769 0.79488 0.76834 1.18012 1.20307 1.15439 1.22650 1.02334 0.85951 0.97651 1.22296 0.88369 1.02515 0.88282 0.88851 0.87759 0.90360 0.73209 0.80667 0.91333 0.89937 0.94756 0.90546 0.90728 0.85247 0.77519 0.91226 0.93901 0.86404 0.86124 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.04 71.24 0.72 -0.46 16 2 C 0.06 1.03 7.37 25.26 0.19 1.21 16 3 O -0.18 -2.70 10.52 4.51 0.05 -2.65 16 4 C -0.02 -0.18 12.03 66.89 0.80 0.62 16 5 C -0.20 -2.74 8.75 23.65 0.21 -2.54 16 6 C -0.26 -5.52 5.33 -18.99 -0.10 -5.62 16 7 C 0.59 16.21 7.25 86.65 0.63 16.84 16 8 O -0.58 -20.35 16.35 -4.08 -0.07 -20.42 16 9 N -0.60 -15.40 3.00 -820.98 -2.47 -17.87 16 10 C 0.13 3.88 6.62 86.50 0.57 4.46 16 11 C 0.05 1.58 5.27 86.54 0.46 2.04 16 12 N -0.53 -15.26 4.37 -898.88 -3.93 -19.19 16 13 C 0.06 1.62 5.45 85.56 0.47 2.09 16 14 C 0.45 19.74 7.44 87.66 0.65 20.40 16 15 O -0.60 -32.56 13.91 -3.07 -0.04 -32.61 16 16 N -0.59 -27.31 5.09 -306.98 -1.56 -28.87 16 17 C -0.33 -18.87 10.16 84.04 0.85 -18.02 16 18 H 0.06 3.82 7.39 -2.91 -0.02 3.80 16 19 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 20 N -0.94 -56.42 13.96 21.66 0.30 -56.12 16 21 Si 0.97 38.29 27.74 68.60 1.90 40.19 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 23 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 25 C 0.04 0.80 5.62 86.38 0.49 1.28 16 26 C 0.11 1.97 6.02 86.35 0.52 2.49 16 27 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.41 7.93 -2.39 -0.02 1.39 16 30 H 0.25 -0.02 8.06 -2.91 -0.02 -0.04 16 31 H 0.18 1.69 7.60 -2.91 -0.02 1.67 16 32 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.08 2.65 7.09 -2.39 -0.02 2.63 16 34 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 3.08 5.77 -2.38 -0.01 3.06 16 36 H 0.07 1.85 8.12 -2.39 -0.02 1.83 16 37 H 0.13 2.85 7.97 -2.39 -0.02 2.84 16 38 H 0.39 14.73 5.76 -92.70 -0.53 14.19 16 39 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.12 1.57 7.99 -2.39 -0.02 1.56 16 42 H 0.12 1.65 4.55 -2.39 -0.01 1.63 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -84.02 353.91 1.56 -82.46 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.46 Total: 30.74 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 6.91 Total: 24.32 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -7.65 Total: -122.04 kcal Atomic # 8 Polarization: -55.61 SS G_CDS: -0.06 Total: -55.67 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.90 Total: 40.19 kcal Total: -84.02 1.56 -82.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066495647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.708 kcal (2) G-P(sol) polarization free energy of solvation -84.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds