Wall clock time and date at job start Fri Apr 10 2020 18:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86793 * 120.00143 * 2 1 4 4 H 1.48501 * 109.47214 * 270.00213 * 3 2 1 5 5 H 1.48503 * 109.47054 * 30.00356 * 3 2 1 6 6 H 1.48503 * 109.47135 * 150.00394 * 3 2 1 7 7 C 1.38657 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00238 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.35748 * 116.99987 * 185.08068 * 9 7 2 11 11 C 1.38902 * 120.07072 * 354.76081 * 10 9 7 12 12 C 1.38073 * 119.92815 * 180.25323 * 11 10 9 13 13 C 1.38325 * 120.07033 * 359.47507 * 12 11 10 14 14 C 1.38278 * 120.14043 * 0.27011 * 13 12 11 15 15 C 1.50692 * 119.96641 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47499 * 89.99897 * 15 14 13 17 17 O 1.21278 * 119.99651 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00291 * 179.97438 * 16 15 14 19 19 C 1.48117 * 127.02982 * 359.68663 * 18 16 15 20 20 C 1.54601 * 103.42133 * 219.28589 * 19 18 16 21 21 H 1.08994 * 110.57854 * 81.17483 * 20 19 18 22 22 O 1.42901 * 110.98754 * 204.37527 * 20 19 18 23 23 C 1.54624 * 102.91282 * 322.86681 * 20 19 18 24 24 H 1.08998 * 110.32683 * 262.81110 * 23 20 19 25 25 C 1.52996 * 110.32357 * 140.59054 * 23 20 19 26 26 O 1.42906 * 109.47047 * 177.92998 * 25 23 20 27 27 C 1.47482 * 127.03695 * 180.02562 * 18 16 15 28 28 C 1.38124 * 120.06675 * 359.97438 * 14 13 12 29 29 H 0.97001 * 119.99814 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.03332 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.96595 * 179.74524 * 12 11 10 32 32 H 1.08000 * 119.93111 * 180.25380 * 13 12 11 33 33 H 1.08999 * 109.47018 * 210.00112 * 15 14 13 34 34 H 1.09005 * 109.47290 * 329.99934 * 15 14 13 35 35 H 1.08995 * 110.66393 * 337.76721 * 19 18 16 36 36 H 1.09004 * 110.66297 * 100.88916 * 19 18 16 37 37 H 0.96695 * 114.00400 * 293.65289 * 22 20 19 38 38 H 1.09001 * 109.47236 * 297.92520 * 25 23 20 39 39 H 1.08997 * 109.47552 * 57.92920 * 25 23 20 40 40 H 0.96689 * 114.00122 * 180.02562 * 26 25 23 41 41 H 1.08997 * 109.91101 * 273.87912 * 27 18 16 42 42 H 1.09004 * 109.91499 * 34.96031 * 27 18 16 43 43 H 1.07996 * 120.03714 * 179.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1060 11 6 3.4574 -3.4390 0.0992 12 6 4.2024 -4.5969 0.2025 13 6 3.5685 -5.8204 0.3237 14 6 2.1875 -5.8886 0.3361 15 6 1.5010 -7.2235 0.4688 16 6 1.2780 -7.5310 1.9271 17 8 1.6405 -6.7435 2.7751 18 7 0.6749 -8.6807 2.2889 19 6 0.1665 -9.7425 1.3900 20 6 -1.1546 -10.1803 2.0631 21 1 -1.9604 -9.4915 1.8095 22 8 -1.4991 -11.5170 1.6932 23 6 -0.8183 -10.0987 3.5701 24 1 -0.5434 -11.0824 3.9505 25 6 -2.0092 -9.5393 4.3508 26 8 -1.6965 -9.5168 5.7451 27 6 0.3800 -9.1358 3.6604 28 6 1.4366 -4.7343 0.2280 29 1 -0.4850 0.8401 0.0004 30 1 3.9529 -2.4836 0.0087 31 1 5.2812 -4.5469 0.1932 32 1 4.1534 -6.7243 0.4084 33 1 0.5411 -7.1912 -0.0466 34 1 2.1256 -7.9990 0.0253 35 1 -0.0241 -9.3442 0.3935 36 1 0.8673 -10.5762 1.3446 37 1 -1.7187 -11.6219 0.7574 38 1 -2.2234 -8.5263 4.0102 39 1 -2.8818 -10.1708 4.1843 40 1 -2.4082 -9.1733 6.3022 41 1 1.2443 -9.6567 4.0725 42 1 0.1272 -8.2817 4.2887 43 1 0.3580 -4.7882 0.2374 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362706521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:07 Heat of formation + Delta-G solvation = -127.960190 kcal Electronic energy + Delta-G solvation = -26457.910847 eV Core-core repulsion = 22469.153211 eV Total energy + Delta-G solvation = -3988.757636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.45030 -39.12420 -38.31102 -36.93488 -36.44750 -35.63848 -32.55991 -32.19606 -31.53000 -29.18265 -28.82059 -27.54265 -25.68019 -25.07548 -23.34144 -21.64885 -21.15012 -20.49594 -19.44427 -18.21006 -17.61168 -17.56952 -17.04151 -16.88598 -15.97126 -15.65201 -15.29670 -14.94162 -14.86800 -14.46176 -14.34773 -13.97822 -13.79096 -13.64492 -13.47705 -13.13014 -12.92139 -12.65709 -12.56569 -12.38929 -11.90135 -11.83856 -11.55328 -11.46901 -11.23886 -11.18007 -10.82487 -10.72535 -10.63288 -10.57852 -10.41085 -10.32781 -9.74485 -9.29452 -8.82990 -8.79438 -8.03054 -7.17482 -6.40106 -3.98983 2.10175 2.43049 2.72095 2.81307 3.15546 3.17106 3.21751 3.49089 3.86380 4.00643 4.07837 4.38507 4.50682 4.55983 4.77340 4.85091 4.91090 4.95428 5.02510 5.12604 5.19196 5.21888 5.27469 5.39559 5.42928 5.48797 5.68325 5.70462 5.75915 5.79160 5.96949 6.09040 6.22074 6.37672 6.69714 6.95644 7.11279 7.11576 7.27781 7.30180 7.39496 7.41665 7.48326 7.86857 8.05130 8.24231 9.05849 9.76662 10.78288 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017603 B = 0.002593 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.243923 B =10796.204080 C =11511.621278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.035 4.035 15 C -0.088 4.088 16 C 0.534 3.466 17 O -0.511 6.511 18 N -0.630 5.630 19 C 0.071 3.929 20 C 0.096 3.904 21 H 0.076 0.924 22 O -0.556 6.556 23 C -0.094 4.094 24 H 0.103 0.897 25 C 0.084 3.916 26 O -0.571 6.571 27 C 0.116 3.884 28 C -0.174 4.174 29 H 0.269 0.731 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.384 0.616 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.383 0.617 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 -22.010 2.300 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.215 4.215 14 C -0.036 4.036 15 C -0.127 4.127 16 C 0.323 3.677 17 O -0.384 6.384 18 N -0.368 5.368 19 C -0.053 4.053 20 C 0.035 3.965 21 H 0.094 0.906 22 O -0.361 6.361 23 C -0.114 4.114 24 H 0.121 0.879 25 C 0.006 3.994 26 O -0.377 6.377 27 C -0.007 4.007 28 C -0.193 4.193 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.232 0.768 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.848 -21.587 3.138 21.999 hybrid contribution -0.157 1.079 -0.407 1.164 sum -3.006 -20.508 2.731 20.906 Atomic orbital electron populations 1.70044 1.05934 1.27527 1.46528 1.25273 0.95839 0.98769 0.96663 0.85720 0.78957 0.80161 0.78636 1.19925 1.20290 1.19210 1.21318 0.91783 0.80851 1.52707 0.89126 1.83972 1.34245 1.11371 1.78808 1.19261 0.90255 0.87946 0.92398 1.21185 0.93839 0.98943 1.10931 1.20680 0.98398 0.92274 0.97929 1.20347 0.93262 0.97047 1.10804 1.18656 0.93277 0.91874 0.99756 1.20564 1.02428 0.97186 0.92541 1.20494 0.76628 0.78870 0.91734 1.90785 1.48733 1.46024 1.52879 1.48777 1.60988 1.19369 1.07666 1.23128 0.95661 0.91559 0.94994 1.22741 0.95538 0.84205 0.93972 0.90591 1.86535 1.90615 1.27302 1.31666 1.22023 0.95133 1.00905 0.93289 0.87907 1.22183 0.95998 0.99529 0.81651 1.86458 1.45592 1.88260 1.17395 1.21968 0.96270 0.97884 0.84531 1.19924 0.99007 0.89950 1.10459 0.92126 0.85581 0.87435 0.87939 0.88390 0.88419 0.89335 0.89909 0.76823 0.93098 0.92988 0.76973 0.91289 0.89599 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.86 13.67 55.48 0.76 -25.10 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.39 -11.23 9.49 30.89 0.29 -10.93 16 8 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 9 O -0.18 -5.31 9.76 0.05 0.00 -5.31 16 10 C 0.15 3.92 6.65 -39.10 -0.26 3.66 16 11 C -0.23 -5.26 9.17 -39.40 -0.36 -5.62 16 12 C -0.07 -1.46 10.04 -39.61 -0.40 -1.86 16 13 C -0.20 -3.61 9.70 -39.53 -0.38 -4.00 16 14 C -0.03 -0.65 4.37 -104.65 -0.46 -1.11 16 15 C -0.09 -1.20 4.76 -29.04 -0.14 -1.33 16 16 C 0.53 8.25 7.88 -10.99 -0.09 8.17 16 17 O -0.51 -10.56 16.37 5.56 0.09 -10.47 16 18 N -0.63 -7.36 3.29 -169.99 -0.56 -7.92 16 19 C 0.07 0.52 6.66 -2.31 -0.02 0.51 16 20 C 0.10 0.67 3.97 -25.04 -0.10 0.57 16 21 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 22 O -0.56 -3.48 13.41 -35.23 -0.47 -3.95 16 23 C -0.09 -0.83 3.05 -89.25 -0.27 -1.10 16 24 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 25 C 0.08 0.69 6.11 37.16 0.23 0.92 16 26 O -0.57 -5.12 13.41 -35.23 -0.47 -5.59 16 27 C 0.12 1.31 6.47 -2.99 -0.02 1.29 16 28 C -0.17 -3.86 9.65 -39.39 -0.38 -4.24 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.13 2.86 5.64 -52.48 -0.30 2.57 16 31 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 33 H 0.10 1.12 7.84 -51.93 -0.41 0.71 16 34 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 35 H 0.09 0.49 7.23 -51.93 -0.38 0.12 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.38 0.72 9.12 45.56 0.42 1.13 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.38 1.77 9.12 45.56 0.42 2.19 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.15 7.52 -51.93 -0.39 0.76 16 43 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -37.81 364.99 -6.88 -44.69 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.25 Total: 6.27 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.45 Total: -14.10 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.20 Total: -33.03 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.85 Total: -25.33 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.81 -6.88 -44.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362706521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.270 kcal (2) G-P(sol) polarization free energy of solvation -37.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds