Wall clock time and date at job start Fri Apr 10 2020 18:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86793 * 120.00143 * 2 1 4 4 H 1.48501 * 109.47214 * 270.00213 * 3 2 1 5 5 H 1.48503 * 109.47054 * 30.00356 * 3 2 1 6 6 H 1.48503 * 109.47135 * 150.00394 * 3 2 1 7 7 C 1.38657 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00238 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.35748 * 116.99987 * 185.08068 * 9 7 2 11 11 C 1.38902 * 120.07072 * 354.76081 * 10 9 7 12 12 C 1.38073 * 119.92815 * 180.25323 * 11 10 9 13 13 C 1.38325 * 120.07033 * 359.47507 * 12 11 10 14 14 C 1.38278 * 120.14043 * 0.27011 * 13 12 11 15 15 C 1.50692 * 119.96641 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47499 * 89.99897 * 15 14 13 17 17 O 1.21278 * 119.99651 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00291 * 179.97438 * 16 15 14 19 19 C 1.48117 * 127.02982 * 359.68663 * 18 16 15 20 20 C 1.54601 * 103.42133 * 219.28589 * 19 18 16 21 21 H 1.08994 * 110.57854 * 81.17483 * 20 19 18 22 22 O 1.42901 * 110.98754 * 204.37527 * 20 19 18 23 23 C 1.54624 * 102.91282 * 322.86681 * 20 19 18 24 24 H 1.08998 * 110.32683 * 262.81110 * 23 20 19 25 25 C 1.52996 * 110.32357 * 140.59054 * 23 20 19 26 26 O 1.42906 * 109.47047 * 177.92998 * 25 23 20 27 27 C 1.47482 * 127.03695 * 180.02562 * 18 16 15 28 28 C 1.38124 * 120.06675 * 359.97438 * 14 13 12 29 29 H 0.97001 * 119.99814 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.03332 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.96595 * 179.74524 * 12 11 10 32 32 H 1.08000 * 119.93111 * 180.25380 * 13 12 11 33 33 H 1.08999 * 109.47018 * 210.00112 * 15 14 13 34 34 H 1.09005 * 109.47290 * 329.99934 * 15 14 13 35 35 H 1.08995 * 110.66393 * 337.76721 * 19 18 16 36 36 H 1.09004 * 110.66297 * 100.88916 * 19 18 16 37 37 H 0.96695 * 114.00400 * 293.65289 * 22 20 19 38 38 H 1.09001 * 109.47236 * 297.92520 * 25 23 20 39 39 H 1.08997 * 109.47552 * 57.92920 * 25 23 20 40 40 H 0.96689 * 114.00122 * 180.02562 * 26 25 23 41 41 H 1.08997 * 109.91101 * 273.87912 * 27 18 16 42 42 H 1.09004 * 109.91499 * 34.96031 * 27 18 16 43 43 H 1.07996 * 120.03714 * 179.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1060 11 6 3.4574 -3.4390 0.0992 12 6 4.2024 -4.5969 0.2025 13 6 3.5685 -5.8204 0.3237 14 6 2.1875 -5.8886 0.3361 15 6 1.5010 -7.2235 0.4688 16 6 1.2780 -7.5310 1.9271 17 8 1.6405 -6.7435 2.7751 18 7 0.6749 -8.6807 2.2889 19 6 0.1665 -9.7425 1.3900 20 6 -1.1546 -10.1803 2.0631 21 1 -1.9604 -9.4915 1.8095 22 8 -1.4991 -11.5170 1.6932 23 6 -0.8183 -10.0987 3.5701 24 1 -0.5434 -11.0824 3.9505 25 6 -2.0092 -9.5393 4.3508 26 8 -1.6965 -9.5168 5.7451 27 6 0.3800 -9.1358 3.6604 28 6 1.4366 -4.7343 0.2280 29 1 -0.4850 0.8401 0.0004 30 1 3.9529 -2.4836 0.0087 31 1 5.2812 -4.5469 0.1932 32 1 4.1534 -6.7243 0.4084 33 1 0.5411 -7.1912 -0.0466 34 1 2.1256 -7.9990 0.0253 35 1 -0.0241 -9.3442 0.3935 36 1 0.8673 -10.5762 1.3446 37 1 -1.7187 -11.6219 0.7574 38 1 -2.2234 -8.5263 4.0102 39 1 -2.8818 -10.1708 4.1843 40 1 -2.4082 -9.1733 6.3022 41 1 1.2443 -9.6567 4.0725 42 1 0.1272 -8.2817 4.2887 43 1 0.3580 -4.7882 0.2374 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362706521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:07 Heat of formation + Delta-G solvation = -159.869085 kcal Electronic energy + Delta-G solvation = -26459.294521 eV Core-core repulsion = 22469.153211 eV Total energy + Delta-G solvation = -3990.141310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.44597 -40.69357 -39.48106 -38.13899 -37.55355 -36.42046 -34.35406 -33.69230 -32.59204 -30.89012 -29.50921 -28.86087 -27.35435 -26.42918 -24.06836 -23.28117 -22.68088 -21.33386 -20.56178 -19.44546 -18.80124 -18.71692 -18.32883 -17.97573 -16.92810 -16.74883 -16.66754 -16.28512 -16.11264 -15.85262 -15.58796 -15.50219 -14.99554 -14.75221 -14.59632 -14.29149 -14.14779 -13.96590 -13.67228 -13.59335 -13.40390 -12.96446 -12.85357 -12.74573 -12.51791 -12.35870 -12.23308 -12.16964 -12.11715 -11.75613 -11.27383 -11.20741 -10.96857 -10.93363 -10.79568 -9.79521 -9.65385 -8.98736 -8.47668 -6.16078 0.49480 0.74655 1.33404 1.43142 1.51362 1.57631 1.84281 2.17268 2.81667 2.95439 3.11087 3.25080 3.42823 3.45775 3.74873 3.77130 3.96273 3.97846 4.09232 4.20465 4.27856 4.30239 4.34644 4.40283 4.49798 4.55437 4.57563 4.62062 4.71585 4.72826 4.84129 4.84378 4.95697 5.06309 5.12336 5.26563 5.30012 5.63771 5.71668 5.74035 6.02217 6.21459 6.42697 6.81992 6.88866 6.97019 7.11635 7.78207 8.75933 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017603 B = 0.002593 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.243923 B =10796.204080 C =11511.621278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.112 3.888 11 C -0.246 4.246 12 C -0.074 4.074 13 C -0.181 4.181 14 C -0.028 4.028 15 C -0.082 4.082 16 C 0.531 3.469 17 O -0.579 6.579 18 N -0.623 5.623 19 C 0.067 3.933 20 C 0.106 3.894 21 H 0.085 0.915 22 O -0.564 6.564 23 C -0.092 4.092 24 H 0.101 0.899 25 C 0.084 3.916 26 O -0.593 6.593 27 C 0.114 3.886 28 C -0.191 4.191 29 H 0.273 0.727 30 H 0.118 0.882 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.405 0.595 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.399 0.601 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 -24.965 1.273 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.062 3.938 11 C -0.266 4.266 12 C -0.092 4.092 13 C -0.199 4.199 14 C -0.029 4.029 15 C -0.121 4.121 16 C 0.321 3.679 17 O -0.458 6.458 18 N -0.359 5.359 19 C -0.055 4.055 20 C 0.046 3.954 21 H 0.103 0.897 22 O -0.373 6.373 23 C -0.111 4.111 24 H 0.119 0.881 25 C 0.006 3.994 26 O -0.401 6.401 27 C -0.009 4.009 28 C -0.210 4.210 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.135 0.865 36 H 0.117 0.883 37 H 0.256 0.744 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.249 0.751 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.618 -24.653 2.081 24.793 hybrid contribution -0.496 1.584 -0.034 1.661 sum -2.114 -23.069 2.047 23.256 Atomic orbital electron populations 1.70190 1.08000 1.28752 1.49058 1.26603 0.96900 1.02713 0.95871 0.84583 0.77697 0.74494 0.79390 1.18424 1.19526 1.17934 1.21821 0.92490 0.81519 1.53237 0.88294 1.83930 1.35890 1.12535 1.81729 1.19863 0.91647 0.87930 0.94341 1.21311 0.93180 1.00190 1.11870 1.21132 1.00246 0.91453 0.96341 1.20973 0.93529 0.98195 1.07200 1.19182 0.93788 0.93025 0.96878 1.20669 1.04324 0.95270 0.91879 1.20742 0.76232 0.79065 0.91833 1.90768 1.52028 1.48438 1.54545 1.48740 1.59265 1.19068 1.08808 1.23470 0.95968 0.90675 0.95372 1.22565 0.95629 0.84940 0.92258 0.89739 1.86505 1.90559 1.26422 1.33769 1.22006 0.94173 0.99793 0.95167 0.88121 1.22217 0.96353 0.99494 0.81289 1.86417 1.47098 1.88507 1.18107 1.21977 0.97475 0.97266 0.84177 1.20209 0.99313 0.90395 1.11122 0.91847 0.86414 0.83691 0.83605 0.85699 0.83851 0.86513 0.88349 0.74390 0.93763 0.91235 0.75090 0.91465 0.92576 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.11 13.67 21.61 0.30 -57.81 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 3 Si 1.02 44.31 29.55 68.60 2.03 46.34 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.41 -25.20 9.49 67.92 0.64 -24.56 16 8 H 0.10 5.56 5.20 -2.91 -0.02 5.54 16 9 O -0.23 -14.76 9.76 -22.75 -0.22 -14.99 16 10 C 0.11 5.95 6.65 22.58 0.15 6.10 16 11 C -0.25 -11.50 9.17 22.39 0.21 -11.30 16 12 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 13 C -0.18 -6.04 9.70 22.30 0.22 -5.83 16 14 C -0.03 -0.99 4.37 -19.88 -0.09 -1.08 16 15 C -0.08 -1.94 4.76 29.10 0.14 -1.80 16 16 C 0.53 15.43 7.88 87.66 0.69 16.12 16 17 O -0.58 -24.06 16.37 -3.02 -0.05 -24.11 16 18 N -0.62 -13.17 3.29 -810.13 -2.67 -15.84 16 19 C 0.07 0.72 6.66 86.61 0.58 1.30 16 20 C 0.11 1.14 3.97 31.69 0.13 1.27 16 21 H 0.08 0.80 7.86 -2.39 -0.02 0.79 16 22 O -0.56 -4.91 13.41 -148.98 -2.00 -6.91 16 23 C -0.09 -1.47 3.05 -9.91 -0.03 -1.50 16 24 H 0.10 1.68 8.08 -2.39 -0.02 1.66 16 25 C 0.08 1.29 6.11 71.98 0.44 1.73 16 26 O -0.59 -10.42 13.41 -148.98 -2.00 -12.42 16 27 C 0.11 2.51 6.47 86.52 0.56 3.07 16 28 C -0.19 -8.68 9.65 22.39 0.22 -8.46 16 29 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 30 H 0.12 5.55 5.64 -2.91 -0.02 5.53 16 31 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 32 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 33 H 0.13 2.32 7.84 -2.39 -0.02 2.31 16 34 H 0.14 2.12 8.09 -2.38 -0.02 2.10 16 35 H 0.12 0.65 7.23 -2.39 -0.02 0.63 16 36 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.40 -0.24 9.12 -74.06 -0.68 -0.91 16 38 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.40 3.57 9.12 -74.06 -0.68 2.89 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 1.57 7.52 -2.38 -0.02 1.56 16 43 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -90.43 364.99 -0.37 -90.79 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -0.29 Total: 23.32 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 4.54 Total: -28.38 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -2.37 Total: -73.65 kcal Atomic # 8 Polarization: -54.16 SS G_CDS: -4.27 Total: -58.42 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -90.43 -0.37 -90.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362706521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.076 kcal (2) G-P(sol) polarization free energy of solvation -90.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds