Wall clock time and date at job start Fri Apr 10 2020 18:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31548 * 1 3 3 Si 1.86808 * 119.99815 * 2 1 4 4 H 1.48504 * 109.46754 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46945 * 299.99867 * 3 2 1 6 6 H 1.48501 * 109.46853 * 59.99955 * 3 2 1 7 7 C 1.38650 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00124 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00089 * 0.02562 * 7 2 1 10 10 C 1.35757 * 117.00617 * 185.05121 * 9 7 2 11 11 C 1.38902 * 120.06413 * 354.46947 * 10 9 7 12 12 C 1.38071 * 119.92988 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06724 * 0.02562 * 12 11 10 14 14 C 1.38282 * 120.14052 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.96499 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47024 * 89.99754 * 15 14 13 17 17 O 1.21275 * 120.00166 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99859 * 179.97438 * 16 15 14 19 19 C 1.46497 * 119.99865 * 180.02562 * 18 16 15 20 20 H 1.09003 * 109.54704 * 35.18124 * 19 18 16 21 21 C 1.53178 * 109.54786 * 275.00419 * 19 18 16 22 22 C 1.53091 * 109.16571 * 183.06444 * 21 19 18 23 23 O 1.42903 * 109.41623 * 57.60956 * 22 21 19 24 24 C 1.42909 * 114.09370 * 298.84046 * 23 22 21 25 25 C 1.53095 * 109.41544 * 61.15929 * 24 23 22 26 26 H 1.09000 * 109.57367 * 62.32416 * 25 24 23 27 27 O 1.42895 * 109.52173 * 182.48487 * 25 24 23 28 28 C 1.38122 * 120.06482 * 0.27127 * 14 13 12 29 29 H 0.97007 * 120.00317 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03550 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.96521 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.93085 * 179.97438 * 13 12 11 33 33 H 1.09000 * 109.47386 * 330.00156 * 15 14 13 34 34 H 1.08999 * 109.46625 * 210.00125 * 15 14 13 35 35 H 0.96994 * 119.99852 * 0.02562 * 18 16 15 36 36 H 1.09006 * 109.51914 * 63.15762 * 21 19 18 37 37 H 1.09005 * 109.57362 * 303.00530 * 21 19 18 38 38 H 1.08994 * 109.48092 * 297.62460 * 22 21 19 39 39 H 1.09005 * 109.48701 * 177.59826 * 22 21 19 40 40 H 1.09000 * 109.47824 * 181.14136 * 24 23 22 41 41 H 1.08992 * 109.48059 * 301.17448 * 24 23 22 42 42 H 0.96708 * 114.00016 * 299.67982 * 27 25 24 43 43 H 1.07998 * 120.02724 * 179.70302 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8906 2.3965 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0700 -3.5046 0.1076 11 6 3.4574 -3.4394 0.0951 12 6 4.2025 -4.5967 0.2047 13 6 3.5686 -5.8201 0.3262 14 6 2.1875 -5.8883 0.3390 15 6 1.5010 -7.2232 0.4721 16 6 1.2785 -7.5303 1.9306 17 8 1.6411 -6.7426 2.7784 18 7 0.6755 -8.6800 2.2928 19 6 0.4586 -8.9783 3.7106 20 1 0.2398 -8.0556 4.2481 21 6 1.7169 -9.6263 4.2963 22 6 1.4546 -10.0039 5.7566 23 8 0.3298 -10.8826 5.8254 24 6 -0.8860 -10.3134 5.3352 25 6 -0.7177 -9.9482 3.8580 26 1 -0.5206 -10.8504 3.2790 27 8 -1.9124 -9.3260 3.3809 28 6 1.4366 -4.7347 0.2246 29 1 -0.4851 0.8401 -0.0004 30 1 3.9529 -2.4845 -0.0002 31 1 5.2813 -4.5467 0.1946 32 1 4.1535 -6.7240 0.4114 33 1 2.1255 -7.9988 0.0288 34 1 0.5410 -7.1910 -0.0431 35 1 0.3851 -9.3099 1.6148 36 1 2.5469 -8.9214 4.2458 37 1 1.9649 -10.5223 3.7273 38 1 1.2477 -9.1026 6.3335 39 1 2.3323 -10.5041 6.1661 40 1 -1.6946 -11.0366 5.4411 41 1 -1.1236 -9.4162 5.9067 42 1 -2.6992 -9.8848 3.4442 43 1 0.3581 -4.7891 0.2298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412554767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:22 Heat of formation + Delta-G solvation = -135.093469 kcal Electronic energy + Delta-G solvation = -26536.017997 eV Core-core repulsion = 22546.951039 eV Total energy + Delta-G solvation = -3989.066959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51493 -39.35463 -38.59231 -36.93282 -36.42272 -34.89153 -32.46590 -32.13375 -31.37316 -30.24881 -29.12197 -27.17094 -25.28471 -24.69865 -23.79115 -21.64826 -21.23456 -20.84733 -20.08660 -17.88867 -17.70389 -17.25410 -16.89305 -16.74946 -16.57032 -15.57950 -15.26759 -15.13867 -14.84225 -14.50104 -14.26401 -14.19878 -13.78989 -13.61540 -13.45596 -13.30246 -13.05689 -12.62760 -12.55079 -12.33593 -11.89885 -11.86049 -11.66002 -11.43886 -11.22938 -10.85262 -10.81675 -10.74261 -10.68646 -10.54606 -10.37749 -10.06211 -9.58080 -9.26276 -9.13069 -8.77717 -7.99353 -7.14580 -6.37730 -3.96600 2.15839 2.46153 2.81207 3.09879 3.16987 3.18783 3.23772 3.30121 3.77001 4.02363 4.22460 4.35013 4.54510 4.61421 4.71362 4.77027 4.87799 4.99221 5.11489 5.16762 5.22474 5.25020 5.28577 5.36254 5.47373 5.55662 5.65552 5.72900 5.80798 5.85410 5.99822 6.24708 6.37889 6.41368 6.64767 6.72940 6.99070 7.14422 7.18197 7.34090 7.43396 7.48803 7.51660 7.90171 8.07544 8.36298 9.08175 9.79643 10.80755 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.002511 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.967996 B =11150.466269 C =11655.801155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.231 4.231 12 C -0.075 4.075 13 C -0.197 4.197 14 C -0.032 4.032 15 C -0.093 4.093 16 C 0.516 3.484 17 O -0.519 6.519 18 N -0.727 5.727 19 C 0.152 3.848 20 H 0.096 0.904 21 C -0.165 4.165 22 C 0.059 3.941 23 O -0.378 6.378 24 C 0.033 3.967 25 C 0.065 3.935 26 H 0.069 0.931 27 O -0.551 6.551 28 C -0.174 4.174 29 H 0.268 0.732 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.380 0.620 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 -23.420 6.509 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.102 3.898 11 C -0.250 4.250 12 C -0.093 4.093 13 C -0.216 4.216 14 C -0.033 4.033 15 C -0.133 4.133 16 C 0.303 3.697 17 O -0.392 6.392 18 N -0.380 5.380 19 C 0.047 3.953 20 H 0.114 0.886 21 C -0.204 4.204 22 C -0.018 4.018 23 O -0.296 6.296 24 C -0.045 4.045 25 C 0.005 3.995 26 H 0.087 0.913 27 O -0.357 6.357 28 C -0.193 4.193 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.233 0.767 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.227 0.773 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.354 -22.281 7.063 23.377 hybrid contribution -0.048 0.310 -0.310 0.441 sum 0.306 -21.972 6.753 22.988 Atomic orbital electron populations 1.70051 1.05930 1.27401 1.46609 1.25273 0.95831 0.98765 0.96718 0.85658 0.79140 0.80497 0.78179 1.19134 1.20200 1.20191 1.21362 0.91792 0.80862 1.52588 0.89095 1.83977 1.34258 1.11375 1.78815 1.19269 0.90243 0.87953 0.92360 1.21175 0.93841 0.98945 1.11069 1.20669 0.98332 0.92315 0.98025 1.20335 0.93276 0.96960 1.11001 1.18658 0.93213 0.91969 0.99462 1.20584 1.02640 0.97126 0.92949 1.20768 0.76865 0.80363 0.91695 1.90753 1.48873 1.46884 1.52722 1.45911 1.62679 1.22255 1.07151 1.20885 0.92103 0.98656 0.83674 0.88613 1.22650 0.98858 1.02001 0.96858 1.22671 0.89212 0.94501 0.95391 1.87952 1.17184 1.40780 1.83693 1.23310 0.87948 0.99838 0.93373 1.22741 0.86144 0.95555 0.95026 0.91332 1.86663 1.17845 1.45077 1.86090 1.19948 0.99093 0.89958 1.10342 0.92179 0.85632 0.87516 0.88003 0.88454 0.88222 0.76723 0.89185 0.90566 0.92368 0.88020 0.88261 0.91821 0.77263 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.13 13.67 55.48 0.76 -25.38 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.20 29.55 -169.99 -5.02 16.17 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.39 -11.32 9.49 30.88 0.29 -11.02 16 8 H 0.09 2.46 5.20 -52.48 -0.27 2.18 16 9 O -0.18 -5.39 9.76 0.03 0.00 -5.38 16 10 C 0.15 3.97 6.65 -39.11 -0.26 3.71 16 11 C -0.23 -5.34 9.17 -39.40 -0.36 -5.70 16 12 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 13 C -0.20 -3.63 9.70 -39.53 -0.38 -4.02 16 14 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 15 C -0.09 -1.28 5.83 -29.03 -0.17 -1.45 16 16 C 0.52 7.73 7.79 -10.98 -0.09 7.64 16 17 O -0.52 -10.30 15.70 5.56 0.09 -10.21 16 18 N -0.73 -7.97 5.01 -53.63 -0.27 -8.24 16 19 C 0.15 1.61 2.21 -67.75 -0.15 1.46 16 20 H 0.10 1.31 7.59 -51.93 -0.39 0.91 16 21 C -0.16 -1.50 5.71 -26.59 -0.15 -1.65 16 22 C 0.06 0.48 6.84 37.20 0.25 0.73 16 23 O -0.38 -3.32 10.77 -35.23 -0.38 -3.70 16 24 C 0.03 0.24 6.47 37.21 0.24 0.48 16 25 C 0.07 0.51 3.18 -26.59 -0.08 0.42 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 O -0.55 -4.61 13.25 -35.23 -0.47 -5.08 16 28 C -0.17 -3.94 9.64 -39.40 -0.38 -4.32 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 31 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 34 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 35 H 0.40 3.20 8.61 -40.82 -0.35 2.85 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.38 1.36 9.09 45.56 0.41 1.78 16 43 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -37.12 363.38 -7.11 -44.23 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.10 Total: 7.77 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -2.19 Total: -15.67 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.49 Total: -33.61 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.76 Total: -24.37 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.12 -7.11 -44.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412554767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.866 kcal (2) G-P(sol) polarization free energy of solvation -37.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds