Wall clock time and date at job start Fri Apr 10 2020 18:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31548 * 1 3 3 Si 1.86808 * 119.99815 * 2 1 4 4 H 1.48504 * 109.46754 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46945 * 299.99867 * 3 2 1 6 6 H 1.48501 * 109.46853 * 59.99955 * 3 2 1 7 7 C 1.38650 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00124 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00089 * 0.02562 * 7 2 1 10 10 C 1.35757 * 117.00617 * 185.05121 * 9 7 2 11 11 C 1.38902 * 120.06413 * 354.46947 * 10 9 7 12 12 C 1.38071 * 119.92988 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06724 * 0.02562 * 12 11 10 14 14 C 1.38282 * 120.14052 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.96499 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47024 * 89.99754 * 15 14 13 17 17 O 1.21275 * 120.00166 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99859 * 179.97438 * 16 15 14 19 19 C 1.46497 * 119.99865 * 180.02562 * 18 16 15 20 20 H 1.09003 * 109.54704 * 35.18124 * 19 18 16 21 21 C 1.53178 * 109.54786 * 275.00419 * 19 18 16 22 22 C 1.53091 * 109.16571 * 183.06444 * 21 19 18 23 23 O 1.42903 * 109.41623 * 57.60956 * 22 21 19 24 24 C 1.42909 * 114.09370 * 298.84046 * 23 22 21 25 25 C 1.53095 * 109.41544 * 61.15929 * 24 23 22 26 26 H 1.09000 * 109.57367 * 62.32416 * 25 24 23 27 27 O 1.42895 * 109.52173 * 182.48487 * 25 24 23 28 28 C 1.38122 * 120.06482 * 0.27127 * 14 13 12 29 29 H 0.97007 * 120.00317 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03550 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.96521 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.93085 * 179.97438 * 13 12 11 33 33 H 1.09000 * 109.47386 * 330.00156 * 15 14 13 34 34 H 1.08999 * 109.46625 * 210.00125 * 15 14 13 35 35 H 0.96994 * 119.99852 * 0.02562 * 18 16 15 36 36 H 1.09006 * 109.51914 * 63.15762 * 21 19 18 37 37 H 1.09005 * 109.57362 * 303.00530 * 21 19 18 38 38 H 1.08994 * 109.48092 * 297.62460 * 22 21 19 39 39 H 1.09005 * 109.48701 * 177.59826 * 22 21 19 40 40 H 1.09000 * 109.47824 * 181.14136 * 24 23 22 41 41 H 1.08992 * 109.48059 * 301.17448 * 24 23 22 42 42 H 0.96708 * 114.00016 * 299.67982 * 27 25 24 43 43 H 1.07998 * 120.02724 * 179.70302 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8906 2.3965 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0700 -3.5046 0.1076 11 6 3.4574 -3.4394 0.0951 12 6 4.2025 -4.5967 0.2047 13 6 3.5686 -5.8201 0.3262 14 6 2.1875 -5.8883 0.3390 15 6 1.5010 -7.2232 0.4721 16 6 1.2785 -7.5303 1.9306 17 8 1.6411 -6.7426 2.7784 18 7 0.6755 -8.6800 2.2928 19 6 0.4586 -8.9783 3.7106 20 1 0.2398 -8.0556 4.2481 21 6 1.7169 -9.6263 4.2963 22 6 1.4546 -10.0039 5.7566 23 8 0.3298 -10.8826 5.8254 24 6 -0.8860 -10.3134 5.3352 25 6 -0.7177 -9.9482 3.8580 26 1 -0.5206 -10.8504 3.2790 27 8 -1.9124 -9.3260 3.3809 28 6 1.4366 -4.7347 0.2246 29 1 -0.4851 0.8401 -0.0004 30 1 3.9529 -2.4845 -0.0002 31 1 5.2813 -4.5467 0.1946 32 1 4.1535 -6.7240 0.4114 33 1 2.1255 -7.9988 0.0288 34 1 0.5410 -7.1910 -0.0431 35 1 0.3851 -9.3099 1.6148 36 1 2.5469 -8.9214 4.2458 37 1 1.9649 -10.5223 3.7273 38 1 1.2477 -9.1026 6.3335 39 1 2.3323 -10.5041 6.1661 40 1 -1.6946 -11.0366 5.4411 41 1 -1.1236 -9.4162 5.9067 42 1 -2.6992 -9.8848 3.4442 43 1 0.3581 -4.7891 0.2298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412554767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:21 Heat of formation + Delta-G solvation = -165.743603 kcal Electronic energy + Delta-G solvation = -26537.347087 eV Core-core repulsion = 22546.951039 eV Total energy + Delta-G solvation = -3990.396048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45068 -40.77052 -39.94783 -38.20805 -37.54812 -35.86669 -34.35610 -33.63617 -32.40801 -30.98995 -30.79261 -28.55460 -27.28334 -25.61270 -24.45320 -23.29597 -22.78890 -21.66685 -21.35454 -19.52221 -18.84131 -18.51590 -18.11644 -17.76840 -17.24897 -16.82956 -16.61547 -16.27058 -16.10875 -16.00141 -15.64562 -15.50439 -15.23131 -14.85860 -14.68186 -14.35204 -14.26269 -13.98410 -13.86094 -13.58798 -13.33240 -12.99283 -12.83229 -12.57674 -12.51800 -12.39438 -12.35987 -12.22626 -12.08735 -11.47532 -11.44810 -11.21856 -11.04393 -10.81721 -10.47048 -10.13045 -9.64280 -8.98335 -8.47963 -6.16625 0.51178 0.75198 1.32807 1.42100 1.52006 1.66060 2.12364 2.17693 2.69279 2.84444 3.15608 3.16242 3.44359 3.58339 3.73226 3.80000 3.89345 4.04884 4.08395 4.10209 4.11667 4.31108 4.33940 4.43525 4.52224 4.58553 4.63326 4.64825 4.67243 4.73284 4.81584 4.93495 5.04876 5.09232 5.12479 5.29986 5.44057 5.64588 5.72317 5.74770 6.02175 6.04189 6.23069 6.55929 6.81713 6.96595 7.29736 7.78484 8.76049 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.002511 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.967996 B =11150.466269 C =11655.801155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.236 6.236 10 C 0.112 3.888 11 C -0.247 4.247 12 C -0.073 4.073 13 C -0.179 4.179 14 C -0.026 4.026 15 C -0.090 4.090 16 C 0.515 3.485 17 O -0.579 6.579 18 N -0.707 5.707 19 C 0.144 3.856 20 H 0.055 0.945 21 C -0.156 4.156 22 C 0.060 3.940 23 O -0.385 6.385 24 C 0.032 3.968 25 C 0.075 3.925 26 H 0.094 0.906 27 O -0.574 6.574 28 C -0.194 4.194 29 H 0.272 0.728 30 H 0.118 0.882 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.118 0.882 35 H 0.417 0.583 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.050 0.950 42 H 0.401 0.599 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 -26.816 6.272 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.143 6.143 10 C 0.062 3.938 11 C -0.266 4.266 12 C -0.091 4.091 13 C -0.197 4.197 14 C -0.026 4.026 15 C -0.129 4.129 16 C 0.303 3.697 17 O -0.457 6.457 18 N -0.359 5.359 19 C 0.038 3.962 20 H 0.073 0.927 21 C -0.194 4.194 22 C -0.018 4.018 23 O -0.303 6.303 24 C -0.046 4.046 25 C 0.016 3.984 26 H 0.112 0.888 27 O -0.383 6.383 28 C -0.214 4.214 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.136 0.864 35 H 0.255 0.745 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.138 0.862 40 H 0.146 0.854 41 H 0.069 0.931 42 H 0.252 0.748 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.108 -25.792 6.810 26.759 hybrid contribution -0.567 1.005 -0.194 1.170 sum 1.541 -24.787 6.616 25.701 Atomic orbital electron populations 1.70199 1.08072 1.28700 1.49168 1.26635 0.96907 1.02799 0.95895 0.84507 0.78193 0.74673 0.78640 1.17475 1.18962 1.19425 1.21872 0.92504 0.81494 1.53112 0.88223 1.83936 1.35982 1.12590 1.81761 1.19867 0.91714 0.87863 0.94358 1.21301 0.93066 1.00270 1.11978 1.21142 1.00253 0.91433 0.96270 1.20974 0.93378 0.98223 1.07174 1.19198 0.93844 0.93000 0.96577 1.20697 1.04198 0.95360 0.92688 1.20948 0.76508 0.80643 0.91609 1.90746 1.51802 1.48944 1.54230 1.45726 1.60839 1.21267 1.08071 1.21003 0.94428 0.97907 0.82818 0.92672 1.22549 0.97245 1.01935 0.97714 1.22712 0.89913 0.94424 0.94703 1.87945 1.17601 1.40958 1.83817 1.23436 0.88205 1.00221 0.92704 1.22654 0.84936 0.95069 0.95779 0.88830 1.86616 1.18980 1.46547 1.86146 1.20212 0.99165 0.90610 1.11399 0.91853 0.86438 0.83577 0.83334 0.83563 0.86372 0.74538 0.91168 0.88641 0.93393 0.86171 0.85368 0.93130 0.74803 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.06 13.67 21.61 0.30 -58.76 16 2 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 3 Si 1.02 44.83 29.55 68.60 2.03 46.86 16 4 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.41 -25.47 9.49 67.92 0.64 -24.83 16 8 H 0.10 5.67 5.20 -2.91 -0.02 5.65 16 9 O -0.24 -15.14 9.76 -22.80 -0.22 -15.37 16 10 C 0.11 6.05 6.65 22.57 0.15 6.20 16 11 C -0.25 -11.65 9.17 22.39 0.21 -11.45 16 12 C -0.07 -2.71 10.04 22.25 0.22 -2.49 16 13 C -0.18 -5.99 9.70 22.30 0.22 -5.77 16 14 C -0.03 -0.92 4.37 -19.88 -0.09 -1.01 16 15 C -0.09 -2.19 5.83 29.10 0.17 -2.02 16 16 C 0.52 14.58 7.79 87.66 0.68 15.26 16 17 O -0.58 -23.13 15.70 -3.01 -0.05 -23.18 16 18 N -0.71 -13.90 5.01 -441.97 -2.22 -16.11 16 19 C 0.14 2.88 2.21 45.11 0.10 2.98 16 20 H 0.05 1.58 7.59 -2.39 -0.02 1.56 16 21 C -0.16 -2.58 5.71 30.68 0.18 -2.40 16 22 C 0.06 0.88 6.84 72.01 0.49 1.38 16 23 O -0.38 -5.93 10.77 -148.98 -1.60 -7.53 16 24 C 0.03 0.39 6.47 72.01 0.47 0.86 16 25 C 0.08 0.99 3.18 30.69 0.10 1.09 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 O -0.57 -8.49 13.25 -148.98 -1.97 -10.47 16 28 C -0.19 -9.11 9.64 22.39 0.22 -8.89 16 29 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 30 H 0.12 5.59 5.64 -2.91 -0.02 5.58 16 31 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 32 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.15 2.17 8.08 -2.39 -0.02 2.15 16 34 H 0.12 2.50 8.08 -2.39 -0.02 2.48 16 35 H 0.42 5.14 8.61 -92.71 -0.80 4.34 16 36 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.40 1.87 9.09 -74.05 -0.67 1.19 16 43 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -89.42 363.38 0.06 -89.36 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: -0.42 Total: 27.34 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 4.22 Total: -32.14 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.92 Total: -74.88 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -3.85 Total: -56.55 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -89.42 0.06 -89.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412554767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.383 kcal (2) G-P(sol) polarization free energy of solvation -89.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds