Wall clock time and date at job start Fri Apr 10 2020 18:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46967 * 65.00094 * 4 3 2 6 6 C 1.46502 * 120.00077 * 85.00140 * 5 4 3 7 7 C 1.50702 * 109.47340 * 84.99760 * 6 5 4 8 8 H 1.07999 * 119.99782 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99800 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00489 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99749 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47178 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.46974 * 120.00560 * 11 9 7 14 14 H 1.48500 * 109.47429 * 240.00250 * 11 9 7 15 15 S 1.65594 * 119.99933 * 264.99755 * 5 4 3 16 16 O 1.42101 * 104.28109 * 206.07236 * 15 5 4 17 17 O 1.42111 * 104.27905 * 333.92937 * 15 5 4 18 18 C 1.81395 * 104.45050 * 89.99864 * 15 5 4 19 19 H 1.09001 * 110.02106 * 300.70515 * 18 15 5 20 20 C 1.54273 * 110.02929 * 62.09524 * 18 15 5 21 21 C 1.54963 * 104.16003 * 142.86323 * 20 18 15 22 22 C 1.54888 * 102.78141 * 322.11207 * 21 20 18 23 23 C 1.53882 * 110.03343 * 179.31050 * 18 15 5 24 24 H 1.08998 * 110.03252 * 121.43681 * 23 18 15 25 25 O 1.42900 * 110.02910 * 0.04955 * 23 18 15 26 26 C 1.42905 * 113.99589 * 150.00498 * 25 23 18 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 31 31 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 32 32 H 1.09004 * 109.47113 * 184.99738 * 4 3 2 33 33 H 1.08993 * 109.47646 * 305.00069 * 4 3 2 34 34 H 1.08996 * 109.46861 * 204.99995 * 6 5 4 35 35 H 1.09004 * 109.46696 * 324.99718 * 6 5 4 36 36 H 0.96995 * 120.00481 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.48017 * 261.56767 * 20 18 15 38 38 H 1.08999 * 110.48670 * 24.21368 * 20 18 15 39 39 H 1.08994 * 110.76663 * 203.77338 * 21 20 18 40 40 H 1.09004 * 110.87910 * 80.49792 * 21 20 18 41 41 H 1.09002 * 110.48219 * 279.24173 * 22 21 20 42 42 H 1.09000 * 110.60371 * 156.64812 * 22 21 20 43 43 H 1.08998 * 109.47252 * 59.99727 * 26 25 23 44 44 H 1.08998 * 109.46982 * 179.97438 * 26 25 23 45 45 H 1.09001 * 109.46767 * 300.00059 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1828 1.3881 -2.4445 7 6 5.5701 1.9761 -2.4155 8 1 6.2321 1.7574 -1.5907 9 6 5.9944 2.7924 -3.4424 10 7 5.1884 3.0584 -4.4470 11 14 7.7137 3.5218 -3.4061 12 1 8.4159 3.0731 -2.1770 13 1 8.4693 3.0678 -4.6012 14 1 7.6229 5.0040 -3.4116 15 16 4.2424 -1.0692 -1.3165 16 8 5.1913 -1.2282 -2.3622 17 8 4.5602 -1.4266 0.0217 18 6 2.6402 -1.7695 -1.7989 19 1 1.8802 -1.5037 -1.0641 20 6 2.2333 -1.2475 -3.1924 21 6 1.5460 -2.4618 -3.8664 22 6 2.4028 -3.6557 -3.3769 23 6 2.7476 -3.3001 -1.9159 24 1 2.0392 -3.7770 -1.2385 25 8 4.0779 -3.7223 -1.6091 26 6 4.1553 -5.0288 -1.0354 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 3.9785 2.1766 0.0902 33 1 3.8508 0.5686 0.8426 34 1 4.0680 0.7716 -3.3359 35 1 3.4475 2.1926 -2.4619 36 1 5.4867 3.6329 -5.1693 37 1 1.5347 -0.4160 -3.0992 38 1 3.1142 -0.9452 -3.7587 39 1 1.5875 -2.3759 -4.9521 40 1 0.5148 -2.5619 -3.5275 41 1 3.3113 -3.7428 -3.9729 42 1 1.8297 -4.5819 -3.4191 43 1 3.7394 -5.7567 -1.7320 44 1 5.1975 -5.2752 -0.8322 45 1 3.5881 -5.0511 -0.1049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414210958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:33 Heat of formation + Delta-G solvation = -159.705867 kcal Electronic energy + Delta-G solvation = -28316.898962 eV Core-core repulsion = 24462.208681 eV Total energy + Delta-G solvation = -3854.690281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.03022 -38.02844 -36.28460 -35.71488 -35.39183 -34.78605 -32.46249 -29.54086 -28.95327 -28.20085 -26.72863 -26.10677 -25.86410 -23.00032 -21.60075 -20.80160 -20.65947 -17.98491 -17.42538 -16.72158 -16.50896 -16.30539 -16.10334 -15.53513 -15.13685 -14.98066 -14.92693 -14.64185 -14.31833 -14.18069 -13.73786 -13.30777 -12.64480 -12.59437 -12.49492 -12.00785 -11.89154 -11.77949 -11.59238 -11.47080 -11.39617 -11.18237 -11.03561 -10.99488 -10.97565 -10.90966 -10.80662 -10.55303 -10.45026 -10.34032 -9.92771 -9.77058 -9.69910 -9.55247 -9.43972 -8.36191 -7.88940 -5.98642 -4.00826 1.21226 3.36271 3.44164 3.49903 3.56932 3.71004 3.88741 4.42514 4.51646 4.55572 4.85351 5.08574 5.17700 5.22392 5.24332 5.30912 5.34071 5.34810 5.37375 5.40762 5.48047 5.55808 5.59593 5.62189 5.64232 5.73214 5.82416 5.85621 5.90456 5.94544 6.03942 6.18341 6.27066 6.41023 6.48679 6.61259 7.08579 7.19469 7.31096 7.52916 7.73550 8.00547 8.31386 9.02251 9.63667 11.10002 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.005755 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.846433 B = 4864.437612 C = 5538.453318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.395 6.395 3 C 0.037 3.963 4 C 0.123 3.877 5 N -0.987 5.987 6 C 0.256 3.744 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.061 3.939 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.285 1.285 15 S 2.640 3.360 16 O -0.935 6.935 17 O -0.976 6.976 18 C -0.615 4.615 19 H 0.162 0.838 20 C -0.096 4.096 21 C -0.114 4.114 22 C -0.145 4.145 23 C 0.110 3.890 24 H 0.075 0.925 25 O -0.402 6.402 26 C 0.038 3.962 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.031 0.969 36 H 0.261 0.739 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.045 0.955 44 H 0.090 0.910 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.765 -10.595 6.128 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.315 6.315 3 C -0.041 4.041 4 C -0.004 4.004 5 N -0.825 5.825 6 C 0.134 3.866 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.141 4.141 10 N -0.538 5.538 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.211 1.211 15 S 2.730 3.270 16 O -0.926 6.926 17 O -0.966 6.966 18 C -0.721 4.721 19 H 0.179 0.821 20 C -0.134 4.134 21 C -0.152 4.152 22 C -0.183 4.183 23 C 0.051 3.949 24 H 0.093 0.907 25 O -0.322 6.322 26 C -0.058 4.058 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.697 -10.978 6.100 17.162 hybrid contribution -0.319 0.615 -0.148 0.709 sum -12.017 -10.363 5.952 16.948 Atomic orbital electron populations 1.22706 0.81544 1.02303 1.00097 1.87727 1.19540 1.29048 1.95195 1.23304 0.95910 0.84159 1.00752 1.21250 0.90264 1.01485 0.87448 1.57579 1.82465 1.24640 1.17815 1.19073 0.96809 0.90310 0.80433 1.21560 0.99256 1.28321 1.06843 0.92094 1.24910 0.97553 0.96436 0.95184 1.69923 1.35904 1.37828 1.10190 0.86495 0.84603 0.78390 0.78293 1.19626 1.20861 1.21104 1.04223 0.75891 0.72821 0.74040 1.93565 1.55448 1.84836 1.58706 1.93427 1.82565 1.83318 1.37294 1.31553 1.28501 1.03214 1.08850 0.82115 1.22094 1.02061 0.98011 0.91223 1.22364 0.98382 0.94022 1.00412 1.22896 1.01170 0.98439 0.95816 1.22449 0.84218 0.91506 0.96765 0.90729 1.87818 1.27399 1.34652 1.82308 1.22792 1.03314 0.83083 0.96656 0.90115 0.94116 0.93909 0.92111 0.92615 0.88074 0.89422 0.94197 0.95076 0.92900 0.90131 0.89550 0.90779 0.91475 0.89637 0.91308 0.93678 0.89182 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.84 101.05 1.10 1.40 16 2 O -0.40 -5.54 7.13 -35.23 -0.25 -5.79 16 3 C 0.04 0.52 6.28 37.16 0.23 0.76 16 4 C 0.12 2.19 6.04 -4.04 -0.02 2.17 16 5 N -0.99 -21.38 2.60 -115.66 -0.30 -21.68 16 6 C 0.26 6.42 4.88 -5.19 -0.03 6.39 16 7 C -0.52 -14.84 9.38 -34.44 -0.32 -15.16 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 11 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 S 2.64 58.30 3.41 -107.50 -0.37 57.94 16 16 O -0.94 -24.51 16.09 -62.47 -1.00 -25.51 16 17 O -0.98 -22.84 16.28 -61.85 -1.01 -23.85 16 18 C -0.62 -10.29 3.29 -25.61 -0.08 -10.37 16 19 H 0.16 2.43 4.64 -51.93 -0.24 2.19 16 20 C -0.10 -1.52 5.98 -25.03 -0.15 -1.67 16 21 C -0.11 -1.42 6.91 -24.70 -0.17 -1.59 16 22 C -0.15 -1.88 6.56 -25.07 -0.16 -2.04 16 23 C 0.11 1.63 3.37 -25.60 -0.09 1.55 16 24 H 0.07 0.91 7.80 -51.93 -0.41 0.50 16 25 O -0.40 -6.94 8.10 -53.63 -0.43 -7.37 16 26 C 0.04 0.46 10.85 101.05 1.10 1.56 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 1.76 8.11 -51.93 -0.42 1.34 16 33 H 0.09 1.57 6.82 -51.93 -0.35 1.21 16 34 H 0.04 1.06 5.98 -51.93 -0.31 0.75 16 35 H 0.03 0.77 8.05 -51.93 -0.42 0.36 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.09 1.62 5.98 -51.93 -0.31 1.31 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -35.53 366.78 -8.31 -43.84 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.49 Total: 0.60 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 1.30 Total: -15.36 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.44 Total: -47.22 kcal Atomic # 8 Polarization: -59.82 SS G_CDS: -2.70 Total: -62.52 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 58.30 SS G_CDS: -0.37 Total: 57.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.53 -8.31 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414210958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.863 kcal (2) G-P(sol) polarization free energy of solvation -35.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds