Wall clock time and date at job start Fri Apr 10 2020 18:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46967 * 65.00094 * 4 3 2 6 6 C 1.46502 * 120.00077 * 85.00140 * 5 4 3 7 7 C 1.50702 * 109.47340 * 84.99760 * 6 5 4 8 8 H 1.07999 * 119.99782 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99800 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00489 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99749 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47178 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.46974 * 120.00560 * 11 9 7 14 14 H 1.48500 * 109.47429 * 240.00250 * 11 9 7 15 15 S 1.65594 * 119.99933 * 264.99755 * 5 4 3 16 16 O 1.42101 * 104.28109 * 206.07236 * 15 5 4 17 17 O 1.42111 * 104.27905 * 333.92937 * 15 5 4 18 18 C 1.81395 * 104.45050 * 89.99864 * 15 5 4 19 19 H 1.09001 * 110.02106 * 300.70515 * 18 15 5 20 20 C 1.54273 * 110.02929 * 62.09524 * 18 15 5 21 21 C 1.54963 * 104.16003 * 142.86323 * 20 18 15 22 22 C 1.54888 * 102.78141 * 322.11207 * 21 20 18 23 23 C 1.53882 * 110.03343 * 179.31050 * 18 15 5 24 24 H 1.08998 * 110.03252 * 121.43681 * 23 18 15 25 25 O 1.42900 * 110.02910 * 0.04955 * 23 18 15 26 26 C 1.42905 * 113.99589 * 150.00498 * 25 23 18 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 31 31 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 32 32 H 1.09004 * 109.47113 * 184.99738 * 4 3 2 33 33 H 1.08993 * 109.47646 * 305.00069 * 4 3 2 34 34 H 1.08996 * 109.46861 * 204.99995 * 6 5 4 35 35 H 1.09004 * 109.46696 * 324.99718 * 6 5 4 36 36 H 0.96995 * 120.00481 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.48017 * 261.56767 * 20 18 15 38 38 H 1.08999 * 110.48670 * 24.21368 * 20 18 15 39 39 H 1.08994 * 110.76663 * 203.77338 * 21 20 18 40 40 H 1.09004 * 110.87910 * 80.49792 * 21 20 18 41 41 H 1.09002 * 110.48219 * 279.24173 * 22 21 20 42 42 H 1.09000 * 110.60371 * 156.64812 * 22 21 20 43 43 H 1.08998 * 109.47252 * 59.99727 * 26 25 23 44 44 H 1.08998 * 109.46982 * 179.97438 * 26 25 23 45 45 H 1.09001 * 109.46767 * 300.00059 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1828 1.3881 -2.4445 7 6 5.5701 1.9761 -2.4155 8 1 6.2321 1.7574 -1.5907 9 6 5.9944 2.7924 -3.4424 10 7 5.1884 3.0584 -4.4470 11 14 7.7137 3.5218 -3.4061 12 1 8.4159 3.0731 -2.1770 13 1 8.4693 3.0678 -4.6012 14 1 7.6229 5.0040 -3.4116 15 16 4.2424 -1.0692 -1.3165 16 8 5.1913 -1.2282 -2.3622 17 8 4.5602 -1.4266 0.0217 18 6 2.6402 -1.7695 -1.7989 19 1 1.8802 -1.5037 -1.0641 20 6 2.2333 -1.2475 -3.1924 21 6 1.5460 -2.4618 -3.8664 22 6 2.4028 -3.6557 -3.3769 23 6 2.7476 -3.3001 -1.9159 24 1 2.0392 -3.7770 -1.2385 25 8 4.0779 -3.7223 -1.6091 26 6 4.1553 -5.0288 -1.0354 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 3.9785 2.1766 0.0902 33 1 3.8508 0.5686 0.8426 34 1 4.0680 0.7716 -3.3359 35 1 3.4475 2.1926 -2.4619 36 1 5.4867 3.6329 -5.1693 37 1 1.5347 -0.4160 -3.0992 38 1 3.1142 -0.9452 -3.7587 39 1 1.5875 -2.3759 -4.9521 40 1 0.5148 -2.5619 -3.5275 41 1 3.3113 -3.7428 -3.9729 42 1 1.8297 -4.5819 -3.4191 43 1 3.7394 -5.7567 -1.7320 44 1 5.1975 -5.2752 -0.8322 45 1 3.5881 -5.0511 -0.1049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414210958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:32 Heat of formation + Delta-G solvation = -185.873905 kcal Electronic energy + Delta-G solvation = -28318.033693 eV Core-core repulsion = 24462.208681 eV Total energy + Delta-G solvation = -3855.825012 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.17770 -39.15411 -37.99520 -37.08537 -36.93871 -36.56674 -34.55377 -31.01887 -30.14989 -29.30898 -28.42840 -27.11586 -26.96486 -24.83166 -23.12348 -22.02890 -21.79573 -19.60448 -18.93947 -18.48812 -18.04967 -17.64890 -17.44209 -16.86671 -16.58569 -16.32108 -16.09196 -16.07037 -15.80741 -15.36425 -15.06188 -14.73962 -14.48187 -13.90731 -13.83269 -13.50095 -13.24369 -13.06411 -13.03919 -12.87874 -12.82673 -12.75337 -12.74275 -12.47529 -12.44512 -12.24993 -12.18214 -12.04465 -11.98163 -11.81782 -11.65037 -11.53456 -11.17913 -10.75525 -10.55486 -10.48148 -9.64657 -8.17788 -6.27990 -0.44407 1.36470 1.39861 1.51473 1.99104 2.42383 2.61904 2.83893 3.08634 3.12275 3.26378 3.46442 3.69197 4.02314 4.11101 4.18736 4.21235 4.25432 4.33597 4.38560 4.46480 4.53250 4.56041 4.62888 4.66767 4.67912 4.75306 4.81791 4.91716 4.94808 4.95864 5.03881 5.05568 5.09519 5.15453 5.24802 5.37295 5.54715 5.74340 5.99592 6.06200 6.17121 6.27875 6.79437 7.39657 8.89511 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.005755 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.846433 B = 4864.437612 C = 5538.453318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.417 6.417 3 C 0.048 3.952 4 C 0.111 3.889 5 N -0.994 5.994 6 C 0.275 3.725 7 C -0.545 4.545 8 H 0.043 0.957 9 C 0.014 3.986 10 N -0.922 5.922 11 Si 0.951 3.049 12 H -0.275 1.275 13 H -0.280 1.280 14 H -0.265 1.265 15 S 2.624 3.376 16 O -0.995 6.995 17 O -1.002 7.002 18 C -0.583 4.583 19 H 0.184 0.816 20 C -0.104 4.104 21 C -0.105 4.105 22 C -0.144 4.144 23 C 0.098 3.902 24 H 0.113 0.887 25 O -0.445 6.445 26 C 0.025 3.975 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.019 0.981 35 H 0.032 0.968 36 H 0.267 0.733 37 H 0.093 0.907 38 H 0.046 0.954 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.109 0.891 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.536 -11.566 6.573 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.337 6.337 3 C -0.030 4.030 4 C -0.015 4.015 5 N -0.831 5.831 6 C 0.151 3.849 7 C -0.584 4.584 8 H 0.062 0.938 9 C -0.185 4.185 10 N -0.562 5.562 11 Si 0.776 3.224 12 H -0.200 1.200 13 H -0.205 1.205 14 H -0.190 1.190 15 S 2.721 3.279 16 O -0.985 6.985 17 O -0.993 6.993 18 C -0.695 4.695 19 H 0.201 0.799 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.181 4.181 23 C 0.039 3.961 24 H 0.131 0.869 25 O -0.366 6.366 26 C -0.070 4.070 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.037 0.963 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.080 0.920 42 H 0.127 0.873 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.425 -11.918 6.586 19.837 hybrid contribution 0.475 0.835 -0.248 0.992 sum -13.950 -11.083 6.338 18.911 Atomic orbital electron populations 1.22982 0.79153 1.04042 1.01237 1.87647 1.22039 1.28648 1.95396 1.23087 0.92896 0.84824 1.02179 1.21485 0.93489 1.00874 0.85649 1.57368 1.83331 1.24470 1.17956 1.18620 0.95118 0.89952 0.81181 1.21860 1.00802 1.29045 1.06687 0.93844 1.25662 1.01214 0.96788 0.94841 1.69992 1.37416 1.38246 1.10587 0.85617 0.80143 0.78620 0.77992 1.19966 1.20546 1.19013 1.04294 0.77765 0.72935 0.72879 1.93485 1.59586 1.85562 1.59889 1.93373 1.84252 1.83493 1.38135 1.31288 1.23567 1.04832 1.09815 0.79877 1.22170 1.01140 1.00375 0.90516 1.22420 0.99663 0.91500 1.00708 1.22936 1.00853 1.00446 0.93909 1.22831 0.84424 0.89704 0.99106 0.86905 1.87792 1.28862 1.37001 1.82964 1.23088 1.04010 0.81851 0.98045 0.88123 0.92553 0.93242 0.92366 0.89336 0.88449 0.89834 0.96298 0.95032 0.92405 0.88856 0.93547 0.90012 0.87876 0.92011 0.87259 0.90728 0.89364 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.84 113.37 1.23 1.58 16 2 O -0.42 -10.71 7.13 -148.98 -1.06 -11.77 16 3 C 0.05 1.30 6.28 71.98 0.45 1.75 16 4 C 0.11 4.05 6.04 86.38 0.52 4.57 16 5 N -0.99 -44.79 2.60 -519.83 -1.35 -46.14 16 6 C 0.27 14.44 4.88 85.63 0.42 14.86 16 7 C -0.54 -32.43 9.38 25.60 0.24 -32.19 16 8 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 9 C 0.01 0.83 5.46 84.65 0.46 1.29 16 10 N -0.92 -54.96 13.29 21.45 0.28 -54.67 16 11 Si 0.95 46.39 29.54 68.60 2.03 48.42 16 12 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 15 S 2.62 120.41 3.41 -56.49 -0.19 120.22 16 16 O -0.99 -55.69 16.09 -122.94 -1.98 -57.67 16 17 O -1.00 -48.62 16.28 -123.53 -2.01 -50.63 16 18 C -0.58 -18.86 3.29 31.32 0.10 -18.76 16 19 H 0.18 5.09 4.64 -2.39 -0.01 5.08 16 20 C -0.10 -3.20 5.98 31.70 0.19 -3.01 16 21 C -0.10 -2.29 6.91 31.91 0.22 -2.07 16 22 C -0.14 -3.30 6.56 31.67 0.21 -3.09 16 23 C 0.10 2.70 3.37 31.32 0.11 2.80 16 24 H 0.11 2.24 7.80 -2.39 -0.02 2.22 16 25 O -0.45 -15.19 8.10 -131.38 -1.06 -16.25 16 26 C 0.02 0.58 10.85 113.37 1.23 1.81 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 1.61 8.08 -2.39 -0.02 1.59 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.10 3.52 8.11 -2.38 -0.02 3.50 16 33 H 0.08 3.08 6.82 -2.39 -0.02 3.06 16 34 H 0.02 1.08 5.98 -2.39 -0.01 1.06 16 35 H 0.03 1.63 8.05 -2.38 -0.02 1.61 16 36 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.05 1.83 5.98 -2.39 -0.01 1.81 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.06 1.71 8.08 -2.39 -0.02 1.70 16 42 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 Total: -1.00 -82.03 366.78 0.99 -81.04 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.96 Total: 17.93 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 5.38 Total: -30.44 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -1.07 Total: -100.82 kcal Atomic # 8 Polarization: -130.22 SS G_CDS: -6.12 Total: -136.33 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Atomic # 16 Polarization: 120.41 SS G_CDS: -0.19 Total: 120.22 kcal Total: -82.03 0.99 -81.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414210958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.837 kcal (2) G-P(sol) polarization free energy of solvation -82.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds