Wall clock time and date at job start Fri Apr 10 2020 18:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48494 * 109.46999 * 270.00232 * 3 2 1 5 5 H 1.48507 * 109.46979 * 30.00063 * 3 2 1 6 6 H 1.48493 * 109.47156 * 149.99889 * 3 2 1 7 7 C 1.38809 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00337 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.47585 * 134.48977 * 179.97438 * 9 7 2 11 11 C 1.53947 * 86.11399 * 155.35081 * 10 9 7 12 12 C 1.52994 * 113.74711 * 269.15087 * 11 10 9 13 13 C 1.52998 * 109.47242 * 172.42051 * 12 11 10 14 14 O 1.42905 * 109.47119 * 175.20961 * 13 12 11 15 15 N 1.46506 * 113.73645 * 137.94945 * 11 10 9 16 16 C 1.34777 * 120.00066 * 74.35961 * 15 11 10 17 17 O 1.21349 * 119.99663 * 355.52235 * 16 15 11 18 18 C 1.49446 * 120.00419 * 175.52382 * 16 15 11 19 19 O 1.21349 * 119.99589 * 359.97438 * 18 16 15 20 20 N 1.34771 * 120.00295 * 180.02562 * 18 16 15 21 21 C 1.46504 * 120.00182 * 179.97438 * 20 18 16 22 22 C 1.52999 * 109.47115 * 179.97438 * 21 20 18 23 23 F 1.39904 * 109.47134 * 299.99644 * 22 21 20 24 24 F 1.39894 * 109.47259 * 59.99885 * 22 21 20 25 25 C 1.47810 * 134.45902 * 359.86220 * 9 7 2 26 26 H 0.96995 * 120.00117 * 359.97438 * 1 2 3 27 27 H 1.09003 * 113.76831 * 41.05349 * 10 9 7 28 28 H 1.08994 * 113.87261 * 269.66884 * 10 9 7 29 29 H 1.08997 * 109.47368 * 292.42764 * 12 11 10 30 30 H 1.09005 * 109.46797 * 52.42186 * 12 11 10 31 31 H 1.09000 * 109.47344 * 295.20745 * 13 12 11 32 32 H 1.09000 * 109.47353 * 55.21383 * 13 12 11 33 33 H 0.96702 * 114.00274 * 180.02562 * 14 13 12 34 34 H 0.97002 * 120.00195 * 254.62866 * 15 11 10 35 35 H 0.96997 * 120.00025 * 359.97438 * 20 18 16 36 36 H 1.09002 * 109.47035 * 299.99559 * 21 20 18 37 37 H 1.09002 * 109.46883 * 59.99287 * 21 20 18 38 38 H 1.09000 * 109.46900 * 180.02562 * 22 21 20 39 39 H 1.08994 * 113.77319 * 90.37994 * 25 9 7 40 40 H 1.09006 * 113.83189 * 318.92210 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 1.7202 -3.8102 -0.0029 11 6 0.3471 -4.0835 0.6375 12 6 0.3647 -4.0581 2.1671 13 6 -1.0683 -4.1511 2.6952 14 8 -1.0455 -4.2399 4.1213 15 7 -0.3332 -5.2614 0.0935 16 6 0.0877 -6.4973 0.4282 17 8 1.0791 -6.6354 1.1142 18 6 -0.6665 -7.6974 -0.0453 19 8 -1.6581 -7.5592 -0.7309 20 7 -0.2458 -8.9332 0.2898 21 6 -0.9855 -10.1097 -0.1740 22 6 -0.3022 -11.3777 0.3419 23 9 1.0093 -11.4307 -0.1423 24 9 -0.2826 -11.3607 1.7406 25 6 -0.1057 -2.7571 0.0001 26 1 -0.4850 0.8400 0.0004 27 1 2.5625 -4.0329 0.6521 28 1 1.8326 -4.2358 -0.9999 29 1 0.9442 -4.9035 2.5379 30 1 0.8186 -3.1283 2.5098 31 1 -1.6244 -3.2629 2.3953 32 1 -1.5504 -5.0379 2.2837 33 1 -1.9218 -4.3022 4.5255 34 1 -1.0842 -5.1520 -0.5106 35 1 0.5467 -9.0437 0.8381 36 1 -2.0074 -10.0682 0.2029 37 1 -1.0004 -10.1230 -1.2639 38 1 -0.8523 -12.2530 -0.0036 39 1 -0.5312 -2.8713 -0.9968 40 1 -0.7188 -2.1405 0.6575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485408900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:41 Heat of formation + Delta-G solvation = -161.659801 kcal Electronic energy + Delta-G solvation = -27770.571570 eV Core-core repulsion = 23258.415830 eV Total energy + Delta-G solvation = -4512.155740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.46069 -47.45113 -40.76632 -39.30906 -37.66697 -36.40372 -35.54367 -33.69046 -31.94199 -30.43395 -30.18657 -27.25238 -25.35675 -25.13594 -23.48613 -22.70348 -21.60492 -20.55944 -18.99168 -18.59350 -18.01123 -17.87586 -17.15970 -16.85153 -16.62825 -16.41149 -15.96855 -15.40518 -15.23766 -14.82258 -14.62280 -14.47689 -14.16614 -13.97277 -13.81614 -13.75596 -13.63594 -13.07034 -12.93429 -12.57638 -12.00565 -11.89303 -11.68757 -11.63904 -11.58071 -11.09884 -10.96787 -10.79437 -10.76107 -10.18354 -10.05926 -9.72937 -9.69637 -9.61668 -9.25429 -8.96588 -8.73617 -6.98408 -5.84223 -3.16682 1.41293 2.19684 3.14538 3.23964 3.37446 3.42470 3.44570 3.53749 3.65402 4.02446 4.24519 4.37722 4.43067 4.54168 4.95033 4.95978 5.11602 5.13512 5.43326 5.50315 5.66867 5.73016 5.74747 5.89363 6.19815 6.33376 6.42279 6.54585 6.64502 6.73022 6.79683 7.04363 7.17075 7.42283 7.43617 7.69963 7.87313 7.89486 8.14526 8.97278 9.63455 10.48012 11.33341 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.002908 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.591333 B = 9627.600088 C =10088.655544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.221 4.221 8 H 0.083 0.917 9 N -0.602 5.602 10 C 0.124 3.876 11 C 0.119 3.881 12 C -0.098 4.098 13 C 0.081 3.919 14 O -0.574 6.574 15 N -0.680 5.680 16 C 0.505 3.495 17 O -0.512 6.512 18 C 0.513 3.487 19 O -0.518 6.518 20 N -0.705 5.705 21 C 0.068 3.932 22 C 0.255 3.745 23 F -0.199 7.199 24 F -0.199 7.199 25 C 0.167 3.833 26 H 0.255 0.745 27 H 0.054 0.946 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.373 0.627 34 H 0.410 0.590 35 H 0.419 0.581 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.130 0.870 39 H 0.034 0.966 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.028 -21.696 0.914 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.349 4.349 8 H 0.101 0.899 9 N -0.329 5.329 10 C -0.003 4.003 11 C 0.034 3.966 12 C -0.136 4.136 13 C 0.004 3.996 14 O -0.378 6.378 15 N -0.333 5.333 16 C 0.284 3.716 17 O -0.388 6.388 18 C 0.294 3.706 19 O -0.393 6.393 20 N -0.361 5.361 21 C -0.057 4.057 22 C 0.201 3.799 23 F -0.180 7.180 24 F -0.180 7.180 25 C 0.041 3.959 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.218 0.782 34 H 0.246 0.754 35 H 0.256 0.744 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.147 0.853 39 H 0.052 0.948 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.313 -21.267 0.847 21.937 hybrid contribution -0.160 0.743 -0.196 0.785 sum -5.473 -20.524 0.651 21.251 Atomic orbital electron populations 1.69777 1.05026 1.25578 1.56459 1.24783 0.95726 0.97604 1.02121 0.86077 0.78698 0.83172 0.77573 1.21591 1.21577 1.20503 1.19000 0.90334 0.81403 1.44135 0.89881 1.45678 1.01753 0.99438 1.86031 1.22871 0.94360 0.85977 0.97067 1.23256 0.95764 0.83854 0.93749 1.21358 0.95823 1.04786 0.91622 1.22130 0.98197 0.99191 0.80113 1.86488 1.33550 1.97294 1.20515 1.46080 1.35242 1.04502 1.47465 1.19850 0.85253 0.84460 0.82029 1.90763 1.24724 1.85989 1.37326 1.20522 0.84958 0.84610 0.80537 1.90763 1.25466 1.86371 1.36705 1.45515 1.31758 1.04531 1.54313 1.22611 0.97497 0.83114 1.02437 1.22230 0.81165 1.00623 0.75915 1.93045 1.39785 1.97637 1.87558 1.93042 1.96626 1.97763 1.30601 1.22618 0.89122 0.86968 0.97187 0.93502 0.92751 0.94447 0.90138 0.88789 0.93075 0.94774 0.78174 0.75407 0.74382 0.87790 0.87759 0.85327 0.94820 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 11.39 55.49 0.63 -25.72 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.22 -6.08 10.70 -15.06 -0.16 -6.24 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -15.03 3.55 -177.49 -0.63 -15.66 16 10 C 0.12 2.61 8.02 -2.96 -0.02 2.59 16 11 C 0.12 2.23 0.68 -134.02 -0.09 2.14 16 12 C -0.10 -1.84 4.68 -26.74 -0.13 -1.96 16 13 C 0.08 1.33 6.86 37.16 0.25 1.58 16 14 O -0.57 -9.08 13.66 -35.23 -0.48 -9.56 16 15 N -0.68 -10.60 4.51 -49.49 -0.22 -10.82 16 16 C 0.50 7.68 7.49 -11.59 -0.09 7.59 16 17 O -0.51 -8.84 14.66 5.50 0.08 -8.76 16 18 C 0.51 6.66 7.89 -11.59 -0.09 6.56 16 19 O -0.52 -7.38 16.48 5.50 0.09 -7.29 16 20 N -0.71 -7.20 5.41 -60.73 -0.33 -7.53 16 21 C 0.07 0.45 5.91 -4.04 -0.02 0.42 16 22 C 0.25 1.36 5.42 37.16 0.20 1.56 16 23 F -0.20 -1.60 17.20 2.25 0.04 -1.56 16 24 F -0.20 -1.59 17.20 2.25 0.04 -1.55 16 25 C 0.17 3.70 6.69 -2.83 -0.02 3.68 16 26 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.05 1.15 8.10 -51.93 -0.42 0.73 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.57 6.55 -51.93 -0.34 1.23 16 30 H 0.09 2.03 8.02 -51.93 -0.42 1.61 16 31 H 0.05 0.84 7.60 -51.93 -0.39 0.45 16 32 H 0.03 0.51 7.46 -51.93 -0.39 0.13 16 33 H 0.37 3.92 9.12 45.56 0.42 4.34 16 34 H 0.41 5.81 8.15 -40.82 -0.33 5.48 16 35 H 0.42 4.34 7.83 -40.82 -0.32 4.02 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 2.05 6.59 -51.93 -0.34 1.71 16 LS Contribution 351.02 15.07 5.29 5.29 Total: -1.00 -33.87 351.02 -4.98 -38.84 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -4.20 Total: 9.81 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: -0.26 Total: 17.67 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.55 Total: -59.72 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.31 Total: -25.62 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.87 -4.98 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485408900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.815 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds