Wall clock time and date at job start Fri Apr 10 2020 18:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86793 * 120.00376 * 2 1 4 4 H 1.48500 * 109.47197 * 239.99867 * 3 2 1 5 5 H 1.48500 * 109.46920 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47742 * 119.99390 * 3 2 1 7 7 C 1.38816 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00135 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00391 * 180.02562 * 9 7 2 11 11 C 1.52990 * 109.47463 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47223 * 305.00056 * 11 10 9 13 13 O 1.42901 * 109.47290 * 64.99983 * 11 10 9 14 14 C 1.53006 * 109.47392 * 184.99934 * 11 10 9 15 15 N 1.46496 * 109.47347 * 179.97438 * 14 11 10 16 16 C 1.34776 * 120.00197 * 179.97438 * 15 14 11 17 17 O 1.21709 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.46604 * 119.99969 * 179.97438 * 16 15 14 19 19 C 1.38035 * 126.00725 * 180.02562 * 18 16 15 20 20 C 1.39395 * 107.43063 * 179.97438 * 19 18 16 21 21 C 1.37754 * 107.65120 * 359.97438 * 20 19 18 22 22 C 1.47916 * 125.81827 * 180.02562 * 21 20 19 23 23 N 1.34202 * 126.70018 * 179.64707 * 22 21 20 24 24 N 1.28982 * 107.24965 * 179.83737 * 23 22 21 25 25 N 1.28727 * 108.99510 * 0.43427 * 24 23 22 26 26 H 0.97002 * 125.31683 * 179.76385 * 25 24 23 27 27 N 1.28870 * 109.36253 * 359.72236 * 25 24 23 28 28 N 1.36389 * 108.36160 * 359.97438 * 21 20 19 29 29 H 0.97000 * 125.71165 * 179.97438 * 28 21 20 30 30 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00080 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47060 * 59.99180 * 10 9 7 33 33 H 1.08996 * 109.46859 * 300.00075 * 10 9 7 34 34 H 0.96688 * 114.00217 * 59.99669 * 13 11 10 35 35 H 1.09003 * 109.46870 * 59.99765 * 14 11 10 36 36 H 1.08997 * 109.46475 * 299.99923 * 14 11 10 37 37 H 0.97007 * 120.00139 * 359.97438 * 15 14 11 38 38 H 1.08001 * 126.28047 * 359.73845 * 19 18 16 39 39 H 1.07995 * 126.17329 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 6 1.0637 -4.8197 0.0021 12 1 0.3792 -4.7123 0.8436 13 8 0.3218 -4.8126 -1.2193 14 6 1.8244 -6.1412 0.1290 15 7 0.8724 -7.2546 0.1299 16 6 1.3181 -8.5224 0.2323 17 8 2.5117 -8.7422 0.3234 18 6 0.3653 -9.6366 0.2338 19 6 0.6833 -10.9761 0.3324 20 6 -0.5117 -11.6928 0.2955 21 6 -1.5402 -10.7842 0.1759 22 6 -2.9806 -11.1121 0.1011 23 7 -3.9965 -10.2421 -0.0087 24 7 -5.0869 -10.9301 -0.0460 25 7 -4.7964 -12.1808 0.0445 26 1 -5.4392 -12.9073 0.0438 27 7 -3.5182 -12.3171 0.1353 28 7 -1.0039 -9.5307 0.1394 29 1 -1.5036 -8.7032 0.0588 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6840 -3.7142 0.8921 33 1 2.6852 -3.7150 -0.8878 34 1 0.8680 -4.9045 -2.0118 35 1 2.3903 -6.1466 1.0606 36 1 2.5088 -6.2486 -0.7126 37 1 -0.0790 -7.0794 0.0570 38 1 1.6761 -11.3927 0.4181 39 1 -0.6130 -12.7666 0.3508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581857766.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:43 Heat of formation + Delta-G solvation = 95.142959 kcal Electronic energy + Delta-G solvation = -25205.516602 eV Core-core repulsion = 21187.478603 eV Total energy + Delta-G solvation = -4018.037999 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.92650 -41.63536 -39.40801 -37.62924 -34.83639 -34.55890 -34.06262 -33.84734 -31.64132 -31.31218 -30.11021 -28.81175 -25.84604 -25.11743 -24.56903 -22.88615 -22.01418 -21.47579 -20.84314 -20.30146 -19.94301 -18.85324 -17.63626 -17.19302 -16.60188 -16.40926 -16.09914 -15.29618 -15.15868 -14.80951 -14.49872 -14.27693 -14.18367 -14.11637 -13.65618 -13.28052 -13.11764 -12.93388 -12.71809 -12.53425 -12.36804 -11.91938 -11.87456 -11.65409 -11.41391 -10.98774 -10.81528 -10.69448 -10.41254 -10.22466 -9.84267 -9.57031 -9.48643 -9.30575 -8.92016 -8.49213 -6.96461 -5.77861 -3.07840 0.38010 0.78972 1.62758 1.66282 2.43898 2.56530 2.90942 3.13007 3.25832 3.43417 3.47665 3.48876 3.79428 4.49791 4.53705 4.67688 4.70176 4.80696 4.86494 4.92938 5.03594 5.17488 5.53416 5.56222 5.57723 5.70132 5.77728 5.87803 5.89281 6.11470 6.16811 6.25369 6.41283 6.47627 6.62901 6.78581 7.28021 7.63626 7.66326 7.86353 7.95421 8.40120 9.51725 10.07749 10.43266 11.44392 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.018492 B = 0.002124 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.791368 B =13181.770739 C =14573.915432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.128 3.872 11 C 0.088 3.912 12 H 0.105 0.895 13 O -0.553 6.553 14 C 0.090 3.910 15 N -0.719 5.719 16 C 0.585 3.415 17 O -0.525 6.525 18 C -0.014 4.014 19 C -0.111 4.111 20 C -0.141 4.141 21 C 0.105 3.895 22 C 0.242 3.758 23 N -0.274 5.274 24 N -0.041 5.041 25 N -0.224 5.224 26 H 0.478 0.522 27 N -0.279 5.279 28 N -0.514 5.514 29 H 0.426 0.574 30 H 0.256 0.744 31 H 0.388 0.612 32 H 0.029 0.971 33 H 0.024 0.976 34 H 0.374 0.626 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.400 0.600 38 H 0.159 0.841 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.235 -29.215 -0.006 30.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.028 3.972 12 H 0.123 0.877 13 O -0.358 6.358 14 C -0.034 4.034 15 N -0.370 5.370 16 C 0.371 3.629 17 O -0.401 6.401 18 C -0.131 4.131 19 C -0.137 4.137 20 C -0.169 4.169 21 C -0.015 4.015 22 C -0.038 4.038 23 N -0.148 5.148 24 N -0.036 5.036 25 N -0.071 5.071 26 H 0.333 0.667 27 N -0.132 5.132 28 N -0.111 5.111 29 H 0.265 0.735 30 H 0.066 0.934 31 H 0.223 0.777 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.221 0.779 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.235 0.765 38 H 0.177 0.823 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.454 -28.802 0.412 29.754 hybrid contribution -0.138 0.831 -0.381 0.924 sum -7.592 -27.972 0.031 28.984 Atomic orbital electron populations 1.69662 1.05122 1.25850 1.57188 1.24768 0.95544 0.97768 1.02766 0.86243 0.78501 0.83401 0.77866 1.21229 1.21650 1.21217 1.19172 0.90982 0.84083 1.43396 0.91220 1.42226 1.06053 0.99382 1.89405 1.21191 0.93458 0.86513 0.98959 1.22424 0.94679 0.91821 0.88295 0.87674 1.86574 1.37572 1.96233 1.15441 1.22177 0.92067 0.85534 1.03645 1.45835 1.11111 1.05641 1.74433 1.16980 0.87289 0.81499 0.77087 1.90875 1.14977 1.84191 1.50051 1.20655 0.81255 0.96202 1.14956 1.21271 0.99299 0.89990 1.03170 1.21137 0.89948 0.99200 1.06663 1.16855 0.85956 0.85265 1.13406 1.22468 0.94048 0.85178 1.02134 1.76211 0.94275 1.26026 1.18242 1.78931 1.20926 0.89535 1.14219 1.47773 1.05104 1.08735 1.45454 0.66698 1.74987 0.92408 1.23870 1.21893 1.41922 1.06325 1.07840 1.55001 0.73477 0.93392 0.77731 0.95292 0.95825 0.77885 0.89952 0.90587 0.76517 0.82325 0.82666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.25 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.15 5.55 -59.91 -0.33 -18.48 16 10 C 0.13 2.40 5.90 -4.05 -0.02 2.38 16 11 C 0.09 1.28 3.09 -26.73 -0.08 1.20 16 12 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 13 O -0.55 -8.31 13.03 -35.23 -0.46 -8.77 16 14 C 0.09 1.10 5.34 -4.04 -0.02 1.08 16 15 N -0.72 -7.91 5.44 -61.64 -0.34 -8.25 16 16 C 0.59 7.17 7.78 -12.89 -0.10 7.07 16 17 O -0.53 -8.13 16.87 5.18 0.09 -8.05 16 18 C -0.01 -0.14 7.04 -81.95 -0.58 -0.72 16 19 C -0.11 -1.04 10.60 -39.23 -0.42 -1.46 16 20 C -0.14 -1.17 10.79 -39.33 -0.42 -1.60 16 21 C 0.10 0.95 7.12 -82.05 -0.58 0.36 16 22 C 0.24 2.23 8.21 -156.25 -1.28 0.95 16 23 N -0.27 -2.77 12.54 32.08 0.40 -2.37 16 24 N -0.04 -0.34 13.46 60.35 0.81 0.47 16 25 N -0.22 -1.16 7.90 60.35 0.48 -0.68 16 26 H 0.48 0.11 8.96 -340.32 -3.05 -2.94 16 27 N -0.28 -2.09 12.39 32.10 0.40 -1.69 16 28 N -0.51 -4.51 6.03 -5.81 -0.04 -4.55 16 29 H 0.43 3.17 8.17 -40.82 -0.33 2.83 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.39 10.40 7.67 -40.82 -0.31 10.09 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.37 4.65 9.04 45.56 0.41 5.06 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.40 3.79 7.45 -40.82 -0.30 3.49 16 38 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -36.30 352.77 -7.82 -44.12 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.09 Total: 11.27 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -3.76 Total: 1.83 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: 2.11 Total: -63.10 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.37 Total: -16.81 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.30 -7.82 -44.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581857766.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.261 kcal (2) G-P(sol) polarization free energy of solvation -36.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds