Wall clock time and date at job start Fri Apr 10 2020 18:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50691 * 109.47141 * 239.99671 * 2 1 3 5 5 H 1.08011 * 119.99994 * 245.64383 * 4 2 1 6 6 C 1.37871 * 120.00306 * 65.64237 * 4 2 1 7 7 N 1.31519 * 120.00387 * 197.14740 * 6 4 2 8 8 Si 1.86804 * 119.99901 * 17.42761 * 6 4 2 9 9 H 1.48495 * 109.47139 * 179.72427 * 8 6 4 10 10 H 1.48499 * 109.46650 * 299.72174 * 8 6 4 11 11 H 1.48501 * 109.46998 * 59.72245 * 8 6 4 12 12 C 1.50701 * 109.46677 * 119.99709 * 2 1 3 13 13 O 1.20823 * 120.00008 * 120.00691 * 12 2 1 14 14 O 1.34232 * 120.00224 * 299.99590 * 12 2 1 15 15 C 1.45193 * 117.00228 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47170 * 180.02562 * 15 14 12 17 17 N 1.46502 * 109.47042 * 180.02562 * 16 15 14 18 18 N 1.39960 * 125.86065 * 90.02512 * 17 16 15 19 19 C 1.30610 * 108.95382 * 180.02562 * 18 17 16 20 20 C 1.40833 * 108.26936 * 0.02562 * 19 18 17 21 21 C 1.48347 * 126.36359 * 180.02562 * 20 19 18 22 22 N 1.33716 * 126.31085 * 179.97438 * 21 20 19 23 23 N 1.28569 * 109.84734 * 180.02562 * 22 21 20 24 24 N 1.28919 * 109.73273 * 359.97438 * 23 22 21 25 25 H 0.96998 * 126.42428 * 180.02562 * 24 23 22 26 26 N 1.32025 * 126.31529 * 359.69201 * 21 20 19 27 27 C 1.35154 * 125.86338 * 269.71899 * 17 16 15 28 28 N 1.38826 * 126.38100 * 0.02562 * 27 17 16 29 29 H 1.08992 * 109.46594 * 66.32055 * 1 2 3 30 30 H 1.08996 * 109.46758 * 186.31975 * 1 2 3 31 31 H 1.08998 * 109.46828 * 306.32149 * 1 2 3 32 32 H 0.97004 * 119.99724 * 355.22179 * 7 6 4 33 33 H 1.08997 * 109.47321 * 300.00748 * 15 14 12 34 34 H 1.09002 * 109.46934 * 60.00207 * 15 14 12 35 35 H 1.09000 * 109.47434 * 299.99691 * 16 15 14 36 36 H 1.08990 * 109.47482 * 60.00408 * 16 15 14 37 37 H 1.07992 * 125.86622 * 179.97438 * 19 18 17 38 38 H 0.96997 * 120.00033 * 359.97438 * 28 27 17 39 39 H 0.97010 * 119.99990 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5761 -1.6387 -1.1338 6 6 1.7979 -0.1756 -2.4793 7 7 1.9235 -0.9277 -3.5509 8 14 1.3096 1.6194 -2.6500 9 1 1.1231 1.9472 -4.0862 10 1 0.0394 1.8584 -1.9187 11 1 2.3780 2.4793 -2.0806 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1198 14 8 1.7081 -0.2517 2.4497 15 6 2.2276 -0.9855 3.5897 16 6 1.7554 -0.3189 4.8835 17 7 2.2801 -1.0590 6.0338 18 7 3.4990 -0.8170 6.6777 19 6 3.6370 -1.6683 7.6585 20 6 2.5010 -2.5003 7.6841 21 6 2.2423 -3.6067 8.6379 22 7 1.1630 -4.3957 8.6615 23 7 1.2660 -5.2477 9.6188 24 7 2.3775 -5.0655 10.2460 25 1 2.6993 -5.5734 11.0071 26 7 3.0375 -3.9971 9.6168 27 6 1.6676 -2.0888 6.6590 28 7 0.4346 -2.6356 6.3305 29 1 -0.3632 0.4127 -0.9411 30 1 -0.3633 -1.0214 0.1131 31 1 -0.3633 0.6087 0.8280 32 1 2.2477 -1.8382 -3.4691 33 1 1.8642 -2.0126 3.5570 34 1 3.3171 -0.9844 3.5567 35 1 2.1186 0.7083 4.9165 36 1 0.6660 -0.3203 4.9164 37 1 4.4781 -1.7251 8.3334 38 1 -0.0732 -2.2750 5.5869 39 1 0.0804 -3.3777 6.8452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:46 Heat of formation + Delta-G solvation = 85.494788 kcal Electronic energy + Delta-G solvation = -25761.762828 eV Core-core repulsion = 21743.306453 eV Total energy + Delta-G solvation = -4018.456375 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.09828 -42.35517 -41.48346 -37.87691 -35.98896 -35.94342 -35.47789 -34.11296 -33.74279 -33.23988 -30.12221 -29.62124 -26.85860 -25.87725 -25.58026 -24.39977 -23.82124 -21.89827 -21.63308 -21.40115 -19.73570 -19.57913 -18.84168 -18.22655 -17.79499 -17.51669 -17.42572 -17.32443 -16.52373 -16.24257 -15.55256 -15.35123 -15.22657 -14.90466 -14.81500 -14.51491 -14.28320 -13.93983 -13.53323 -13.31751 -13.23176 -13.10421 -12.91602 -12.36129 -12.28990 -12.19549 -12.03488 -11.98189 -11.81024 -11.77842 -11.65475 -11.58553 -11.22433 -11.02475 -10.43521 -10.08827 -8.83969 -8.83340 -6.44889 -0.09023 0.62034 0.85331 1.09394 1.28590 1.37829 1.51751 1.61176 1.76751 1.88809 2.12366 2.52157 2.65764 2.90147 3.04349 3.17861 3.48502 3.54504 3.82465 3.97161 4.06499 4.09957 4.40972 4.41480 4.50320 4.52270 4.62156 4.63645 4.72373 4.87823 5.09209 5.27217 5.30979 5.49570 5.51297 5.75085 5.79032 6.00535 6.20789 6.40100 6.52104 6.79853 6.88577 7.17042 7.36075 8.57820 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.030359 B = 0.002221 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.067861 B =12602.376830 C =12829.443677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.024 3.976 3 H 0.081 0.919 4 C -0.611 4.611 5 H 0.019 0.981 6 C -0.018 4.018 7 N -0.930 5.930 8 Si 1.083 2.917 9 H -0.290 1.290 10 H -0.221 1.221 11 H -0.259 1.259 12 C 0.479 3.521 13 O -0.547 6.547 14 O -0.344 6.344 15 C 0.047 3.953 16 C 0.147 3.853 17 N -0.395 5.395 18 N -0.322 5.322 19 C 0.129 3.871 20 C -0.281 4.281 21 C 0.303 3.697 22 N -0.340 5.340 23 N 0.006 4.994 24 N -0.278 5.278 25 H 0.486 0.514 26 N -0.316 5.316 27 C 0.430 3.570 28 N -0.822 5.822 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.249 0.751 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.213 0.787 38 H 0.415 0.585 39 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.779 -0.043 29.783 30.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.004 3.996 3 H 0.099 0.901 4 C -0.649 4.649 5 H 0.037 0.963 6 C -0.215 4.215 7 N -0.565 5.565 8 Si 0.901 3.099 9 H -0.217 1.217 10 H -0.144 1.144 11 H -0.184 1.184 12 C 0.324 3.676 13 O -0.435 6.435 14 O -0.260 6.260 15 C -0.029 4.029 16 C 0.026 3.974 17 N -0.184 5.184 18 N -0.140 5.140 19 C -0.062 4.062 20 C -0.303 4.303 21 C 0.023 3.977 22 N -0.219 5.219 23 N 0.010 4.990 24 N -0.129 5.129 25 H 0.344 0.656 26 N -0.161 5.161 27 C 0.193 3.807 28 N -0.372 5.372 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.230 0.770 38 H 0.247 0.753 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -4.781 1.376 28.227 28.662 hybrid contribution 1.041 -3.124 1.269 3.529 sum -3.739 -1.748 29.496 29.783 Atomic orbital electron populations 1.22062 0.92985 1.01451 1.03057 1.19076 0.96661 0.97393 0.86421 0.90107 1.22026 1.40918 1.09449 0.92478 0.96295 1.27501 0.93777 1.09205 0.91067 1.71003 1.43521 1.09484 1.32518 0.83678 0.79904 0.69293 0.77043 1.21650 1.14430 1.18394 1.24615 0.75997 0.82465 0.84558 1.90553 1.37478 1.28248 1.87258 1.86452 1.69771 1.55312 1.14459 1.23311 0.99411 0.95901 0.84296 1.21469 1.01129 0.96667 0.78172 1.48111 1.16145 1.27489 1.26683 1.77412 0.99063 1.25583 1.11909 1.24020 0.97250 0.89980 0.94942 1.16488 1.01536 1.06886 1.05343 1.22520 0.88011 0.94355 0.92846 1.75188 1.23987 1.06207 1.16474 1.78189 1.04453 1.15604 1.00800 1.50946 1.11325 1.23907 1.26722 0.65551 1.78861 1.20348 1.04937 1.11941 1.18109 0.86578 0.86149 0.89819 1.41946 1.16444 1.39896 1.38930 0.91549 0.94249 0.89654 0.94173 0.91793 0.92437 0.85519 0.84667 0.77043 0.75336 0.73329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 8.80 71.99 0.63 -4.46 16 2 C 0.02 1.08 2.32 -12.29 -0.03 1.05 16 3 H 0.08 3.27 6.80 -2.39 -0.02 3.25 16 4 C -0.61 -35.05 8.63 25.60 0.22 -34.83 16 5 H 0.02 1.26 7.02 -2.91 -0.02 1.24 16 6 C -0.02 -1.00 5.29 84.65 0.45 -0.56 16 7 N -0.93 -58.15 13.70 21.45 0.29 -57.86 16 8 Si 1.08 45.51 26.29 68.60 1.80 47.31 16 9 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.22 -7.56 5.76 99.48 0.57 -6.98 16 11 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 12 C 0.48 20.68 7.25 71.24 0.52 21.20 16 13 O -0.55 -28.32 15.22 21.97 0.33 -27.99 16 14 O -0.34 -10.99 10.15 -51.43 -0.52 -11.51 16 15 C 0.05 1.26 5.79 71.98 0.42 1.67 16 16 C 0.15 2.62 6.62 86.38 0.57 3.19 16 17 N -0.40 -8.24 3.61 -343.73 -1.24 -9.48 16 18 N -0.32 -7.57 12.51 -56.50 -0.71 -8.28 16 19 C 0.13 2.63 11.99 85.51 1.03 3.65 16 20 C -0.28 -6.00 6.16 -19.92 -0.12 -6.13 16 21 C 0.30 6.38 8.15 137.37 1.12 7.50 16 22 N -0.34 -6.99 10.70 -52.31 -0.56 -7.55 16 23 N 0.01 0.10 13.42 37.02 0.50 0.60 16 24 N -0.28 -3.53 8.44 37.02 0.31 -3.22 16 25 H 0.49 1.58 8.96 -340.35 -3.05 -1.47 16 26 N -0.32 -5.84 12.90 -52.27 -0.67 -6.51 16 27 C 0.43 8.54 8.01 132.10 1.06 9.60 16 28 N -0.82 -12.03 9.08 -54.47 -0.49 -12.52 16 29 H 0.07 2.48 4.88 -2.39 -0.01 2.47 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.25 16.16 8.73 -92.71 -0.81 15.35 16 33 H 0.06 1.78 8.13 -2.39 -0.02 1.77 16 34 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 35 H 0.13 2.04 8.14 -2.39 -0.02 2.03 16 36 H 0.14 1.50 7.47 -2.39 -0.02 1.49 16 37 H 0.21 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.42 4.28 8.07 -92.71 -0.75 3.53 16 39 H 0.43 6.32 7.23 -92.70 -0.67 5.65 16 Total: -1.00 -80.72 342.89 1.42 -79.30 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -3.48 Total: 15.82 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 5.86 Total: 1.89 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -2.57 Total: -104.83 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.19 Total: -39.50 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.80 Total: 47.31 kcal Total: -80.72 1.42 -79.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.794 kcal (2) G-P(sol) polarization free energy of solvation -80.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds