Wall clock time and date at job start Fri Apr 10 2020 18:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.20822 * 119.99840 * 240.00038 * 12 2 1 14 14 O 1.34228 * 120.00316 * 60.00271 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46910 * 180.02562 * 15 14 12 17 17 N 1.46503 * 109.47191 * 180.02562 * 16 15 14 18 18 N 1.39949 * 125.86871 * 90.01783 * 17 16 15 19 19 C 1.30595 * 108.95754 * 180.02562 * 18 17 16 20 20 C 1.40819 * 108.27546 * 359.97438 * 19 18 17 21 21 C 1.48347 * 126.37080 * 180.02562 * 20 19 18 22 22 N 1.33724 * 126.31288 * 180.02562 * 21 20 19 23 23 N 1.28558 * 109.84660 * 180.02562 * 22 21 20 24 24 N 1.28915 * 109.73613 * 359.97438 * 23 22 21 25 25 H 0.97001 * 126.43162 * 180.02562 * 24 23 22 26 26 N 1.32028 * 126.31525 * 359.69520 * 21 20 19 27 27 C 1.35166 * 125.85756 * 269.71753 * 17 16 15 28 28 N 1.38829 * 126.38270 * 359.97438 * 27 17 16 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 34 34 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 35 35 H 1.09006 * 109.47239 * 299.99741 * 16 15 14 36 36 H 1.08995 * 109.47984 * 59.99571 * 16 15 14 37 37 H 1.08001 * 125.86172 * 179.97438 * 19 18 17 38 38 H 0.97004 * 119.99733 * 0.02562 * 28 27 17 39 39 H 0.97003 * 119.99706 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 6 2.0323 -0.7103 -1.2305 13 8 2.7269 -1.6927 -1.1197 14 8 1.7081 -0.2516 -2.4496 15 6 2.2267 -0.9861 -3.5897 16 6 1.7558 -0.3187 -4.8834 17 7 2.2786 -1.0600 -6.0338 18 7 1.6443 -2.1284 -6.6778 19 6 2.4009 -2.5422 -7.6585 20 6 3.5634 -1.7479 -7.6848 21 6 4.6925 -1.8724 -8.6389 22 7 5.7962 -1.1177 -8.6626 23 7 6.5649 -1.4986 -9.6200 24 7 6.0226 -2.4856 -10.2473 25 1 6.3940 -2.9582 -11.0087 26 7 4.7959 -2.7527 -9.6175 27 6 3.4539 -0.8258 -6.6589 28 7 4.3800 0.1550 -6.3309 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7089 1.1611 3.4845 33 1 3.3163 -0.9858 -3.5570 34 1 1.8625 -2.0129 -3.5567 35 1 0.6663 -0.3185 -4.9165 36 1 2.1203 0.7080 -4.9163 37 1 2.1740 -3.3542 -8.3335 38 1 4.2093 0.7539 -5.5872 39 1 5.1981 0.2409 -6.8450 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589786914.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:49 Heat of formation + Delta-G solvation = 111.170587 kcal Electronic energy + Delta-G solvation = -25685.340690 eV Core-core repulsion = 21667.997701 eV Total energy + Delta-G solvation = -4017.342989 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.33795 -41.48981 -39.69465 -36.21094 -35.13477 -34.54517 -33.95623 -33.28830 -32.86877 -30.71244 -28.99308 -28.79280 -25.26333 -24.82123 -24.49674 -23.24898 -22.59619 -21.00396 -20.69102 -19.93481 -19.00046 -17.78957 -16.89187 -16.71836 -16.66299 -16.24857 -16.05483 -15.95660 -15.49335 -15.10623 -14.39531 -14.25976 -14.10734 -13.85249 -13.42215 -13.01776 -12.73380 -12.49411 -12.15312 -11.84008 -11.53813 -11.46291 -11.37662 -11.17612 -11.10565 -11.01887 -10.88668 -10.83864 -10.74348 -10.42008 -10.20326 -10.10865 -9.35248 -9.13562 -9.10575 -8.50201 -8.01834 -6.15954 -4.21628 0.66287 1.48262 1.73862 1.93259 2.03367 2.96382 3.17684 3.21145 3.27606 3.33453 3.39573 3.58958 3.66995 3.98050 4.33394 4.37294 4.68476 4.71614 5.01558 5.06419 5.17603 5.20503 5.40224 5.51922 5.53320 5.57010 5.97459 6.11667 6.27570 6.34109 6.59720 6.78758 6.80608 6.99743 7.05619 7.14679 7.36261 7.58104 7.68491 7.88356 7.93936 8.07450 8.72142 8.87113 9.44328 10.91333 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.027337 B = 0.002176 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.008179 B =12863.517091 C =13260.118031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 H 0.066 0.934 4 C -0.514 4.514 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.285 1.285 12 C 0.467 3.533 13 O -0.512 6.512 14 O -0.364 6.364 15 C 0.046 3.954 16 C 0.137 3.863 17 N -0.389 5.389 18 N -0.293 5.293 19 C 0.125 3.875 20 C -0.267 4.267 21 C 0.314 3.686 22 N -0.324 5.324 23 N 0.010 4.990 24 N -0.303 5.303 25 H 0.468 0.532 26 N -0.309 5.309 27 C 0.432 3.568 28 N -0.834 5.834 29 H 0.024 0.976 30 H 0.032 0.968 31 H 0.097 0.903 32 H 0.264 0.736 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.193 0.807 38 H 0.406 0.594 39 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 -1.175 -24.404 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 H 0.083 0.917 4 C -0.552 4.552 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.211 1.211 12 C 0.311 3.689 13 O -0.398 6.398 14 O -0.281 6.281 15 C -0.030 4.030 16 C 0.016 3.984 17 N -0.177 5.177 18 N -0.110 5.110 19 C -0.067 4.067 20 C -0.288 4.288 21 C 0.035 3.965 22 N -0.203 5.203 23 N 0.014 4.986 24 N -0.150 5.150 25 H 0.322 0.678 26 N -0.153 5.153 27 C 0.196 3.804 28 N -0.383 5.383 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.209 0.791 38 H 0.236 0.764 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 5.006 -1.396 -23.766 24.328 hybrid contribution 1.312 -0.643 0.098 1.464 sum 6.318 -2.040 -23.668 24.582 Atomic orbital electron populations 1.21749 0.95462 1.00170 1.01830 1.18790 0.94944 0.96960 0.85209 0.91687 1.21121 1.32076 1.13293 0.88725 0.90652 1.24938 0.94874 0.94996 0.99160 1.69873 1.36432 1.22714 1.23952 0.86366 0.79464 0.79232 0.81672 1.20472 1.19686 1.21096 1.25474 0.76584 0.83334 0.83477 1.90524 1.36194 1.26615 1.86470 1.86561 1.70657 1.55661 1.15264 1.23059 0.99186 0.96738 0.84053 1.21439 1.02478 0.93796 0.80679 1.48140 1.14089 1.28957 1.26554 1.77446 1.20353 1.02297 1.10934 1.23635 0.89914 0.97798 0.95327 1.16297 0.98564 1.09116 1.04813 1.22480 0.92511 0.89126 0.92428 1.75212 1.03108 1.26265 1.15722 1.78233 1.19654 1.00020 1.00737 1.50931 1.13167 1.23987 1.26926 0.67833 1.78916 1.00474 1.23923 1.11977 1.17972 0.83748 0.88693 0.89968 1.41943 1.22512 1.34946 1.38913 0.95698 0.94910 0.88475 0.92626 0.91534 0.90575 0.86639 0.88050 0.79064 0.76450 0.73584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.90 37.16 0.33 -2.73 16 2 C 0.06 1.47 2.74 -92.93 -0.25 1.21 16 3 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 4 C -0.51 -14.12 8.37 -34.44 -0.29 -14.41 16 5 H 0.08 2.17 6.76 -52.49 -0.35 1.82 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 8 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 12 C 0.47 10.51 7.25 36.00 0.26 10.77 16 13 O -0.51 -12.79 15.21 -18.75 -0.29 -13.07 16 14 O -0.36 -6.56 10.12 -39.25 -0.40 -6.96 16 15 C 0.05 0.67 5.79 37.16 0.22 0.89 16 16 C 0.14 1.49 6.62 -4.04 -0.03 1.46 16 17 N -0.39 -4.53 3.61 -59.99 -0.22 -4.75 16 18 N -0.29 -3.70 12.51 30.78 0.38 -3.31 16 19 C 0.12 1.37 11.99 -17.10 -0.20 1.16 16 20 C -0.27 -3.06 6.16 -104.71 -0.64 -3.70 16 21 C 0.31 3.55 8.15 -156.43 -1.27 2.28 16 22 N -0.32 -3.56 10.70 32.12 0.34 -3.22 16 23 N 0.01 0.09 13.42 60.35 0.81 0.90 16 24 N -0.30 -2.22 8.44 60.35 0.51 -1.71 16 25 H 0.47 1.27 8.96 -331.92 -2.98 -1.71 16 26 N -0.31 -3.12 12.90 32.13 0.41 -2.70 16 27 C 0.43 4.74 8.01 -153.06 -1.23 3.52 16 28 N -0.83 -7.08 9.08 31.43 0.29 -6.80 16 29 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 34 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 35 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.10 0.83 7.47 -51.93 -0.39 0.45 16 37 H 0.19 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.41 2.72 8.07 -40.82 -0.33 2.39 16 39 H 0.43 3.55 7.23 -40.82 -0.29 3.26 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -33.14 347.19 -7.27 -40.41 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.75 Total: 1.42 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -3.21 Total: 2.02 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 3.16 Total: -45.21 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.68 Total: -20.03 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.14 -7.27 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786914.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.577 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds