Wall clock time and date at job start Fri Apr 10 2020 18:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46895 * 111.00247 * 2 1 4 4 C 1.50702 * 109.47207 * 74.53523 * 3 2 1 5 5 H 1.07991 * 119.99984 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00033 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00112 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00099 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47097 * 90.00201 * 8 6 4 10 10 H 1.48506 * 109.47218 * 210.00389 * 8 6 4 11 11 H 1.48498 * 109.47191 * 330.00141 * 8 6 4 12 12 C 1.36881 * 110.99860 * 236.04565 * 2 1 3 13 13 C 1.38978 * 120.43164 * 255.01511 * 12 2 1 14 14 C 1.48197 * 120.66932 * 359.95429 * 13 12 2 15 15 N 1.33762 * 126.32682 * 353.63183 * 14 13 12 16 16 N 1.28563 * 109.84398 * 179.97438 * 15 14 13 17 17 N 1.28909 * 109.75126 * 359.97438 * 16 15 14 18 18 H 0.97000 * 126.42886 * 179.97438 * 17 16 15 19 19 N 1.32084 * 126.32278 * 173.31536 * 14 13 12 20 20 C 1.41461 * 118.66160 * 179.97438 * 13 12 2 21 21 O 1.21846 * 120.30062 * 180.02562 * 20 13 12 22 22 N 1.34759 * 119.40449 * 0.02562 * 20 13 12 23 23 C 1.46496 * 119.58691 * 179.72372 * 22 20 13 24 24 C 1.34431 * 120.82618 * 359.97438 * 22 20 13 25 25 O 1.21582 * 119.28100 * 179.97438 * 24 22 20 26 26 N 1.34483 * 121.44530 * 0.02562 * 24 22 20 27 27 C 1.46500 * 119.73486 * 179.97438 * 26 24 22 28 28 H 1.08996 * 109.47165 * 194.07577 * 1 2 3 29 29 H 1.09002 * 109.46800 * 314.07382 * 1 2 3 30 30 H 1.08997 * 109.46958 * 74.07088 * 1 2 3 31 31 H 1.09002 * 109.47537 * 194.53622 * 3 2 1 32 32 H 1.09007 * 109.47422 * 314.53729 * 3 2 1 33 33 H 0.97001 * 120.00486 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.46813 * 359.97438 * 23 22 20 35 35 H 1.08999 * 109.47428 * 119.99813 * 23 22 20 36 36 H 1.09002 * 109.47099 * 240.00116 * 23 22 20 37 37 H 1.08998 * 109.47486 * 264.93766 * 27 26 24 38 38 H 1.09002 * 109.47296 * 24.93846 * 27 26 24 39 39 H 1.09003 * 109.47277 * 144.93849 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.8218 1.9761 1.3694 5 1 1.3664 1.3993 2.1606 6 6 2.2455 3.2656 1.6123 7 7 2.8006 3.9679 0.6489 8 14 2.0309 4.0149 3.3099 9 1 3.2337 3.7295 4.1326 10 1 1.8547 5.4841 3.1838 11 1 0.8337 3.4271 3.9628 12 6 1.9595 -0.7138 -1.0600 13 6 2.5010 -1.9790 -0.8665 14 6 2.5585 -2.5776 0.4880 15 7 2.2365 -1.9718 1.6363 16 7 2.4032 -2.7833 2.6195 17 7 2.8264 -3.9189 2.1801 18 1 3.0314 -4.7028 2.7134 19 7 2.9316 -3.8096 0.7837 20 6 2.9966 -2.6837 -1.9884 21 8 3.4773 -3.7952 -1.8531 22 7 2.9325 -2.1148 -3.2084 23 6 3.4501 -2.8386 -4.3721 24 6 2.4039 -0.8894 -3.3700 25 8 2.3605 -0.4027 -4.4833 26 7 1.9230 -0.1896 -2.3272 27 6 1.3556 1.1432 -2.5462 28 1 -0.3633 -0.9968 0.2499 29 1 -0.3633 0.7149 0.7383 30 1 -0.3633 0.2820 -0.9882 31 1 3.0544 1.3541 -0.2579 32 1 1.4528 1.9690 -0.7325 33 1 3.0983 4.8751 0.8197 34 1 3.8413 -3.8051 -4.0544 35 1 2.6463 -2.9906 -5.0925 36 1 4.2482 -2.2584 -4.8353 37 1 2.1209 1.8981 -2.3658 38 1 1.0016 1.2230 -3.5740 39 1 0.5220 1.3002 -1.8616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609274237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:07 Heat of formation + Delta-G solvation = 143.343654 kcal Electronic energy + Delta-G solvation = -28478.758099 eV Core-core repulsion = 24462.810239 eV Total energy + Delta-G solvation = -4015.947860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.71079 -42.26804 -39.38305 -38.66707 -35.19401 -34.92644 -33.83272 -32.66395 -32.41834 -31.04286 -27.98666 -27.75736 -27.15522 -25.53144 -24.26697 -23.60864 -22.81895 -21.79723 -21.39304 -19.21574 -18.35013 -17.31423 -17.16763 -17.00122 -16.25141 -15.95272 -15.59460 -15.32130 -15.03992 -14.78040 -14.57799 -14.22449 -13.99346 -13.52504 -13.41503 -13.25637 -12.85801 -12.38611 -12.20943 -11.98313 -11.78739 -11.58850 -11.23214 -11.20937 -11.00340 -10.83143 -10.73290 -10.47125 -10.29334 -10.23153 -10.14296 -10.00346 -9.68779 -9.53562 -8.64341 -8.22969 -7.92556 -6.21101 -4.22119 0.73458 1.51476 1.89374 2.02087 2.60465 2.84486 2.99815 3.26693 3.33601 3.36759 3.67324 3.88545 4.10369 4.38000 4.72272 4.83778 5.05070 5.15908 5.20899 5.33349 5.41569 5.43869 5.51129 5.59856 5.65241 5.73629 5.76138 5.90574 5.98972 6.08646 6.30649 6.42098 6.67010 6.75968 6.93952 7.21449 7.38734 7.46533 7.63261 7.84529 8.00379 8.14815 8.71715 8.85791 9.42695 10.89578 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.005836 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.793268 B = 4796.829530 C = 6657.954746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.473 5.473 3 C 0.171 3.829 4 C -0.504 4.504 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.899 5.899 8 Si 0.904 3.096 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.271 1.271 12 C 0.464 3.536 13 C -0.225 4.225 14 C 0.292 3.708 15 N -0.242 5.242 16 N -0.011 5.011 17 N -0.320 5.320 18 H 0.461 0.539 19 N -0.278 5.278 20 C 0.567 3.433 21 O -0.501 6.501 22 N -0.557 5.557 23 C 0.084 3.916 24 C 0.695 3.305 25 O -0.540 6.540 26 N -0.546 5.546 27 C 0.057 3.943 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.031 0.969 31 H 0.035 0.965 32 H 0.029 0.971 33 H 0.264 0.736 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 -10.721 -4.835 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.195 5.195 3 C 0.049 3.951 4 C -0.542 4.542 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.731 3.269 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.196 1.196 12 C 0.257 3.743 13 C -0.240 4.240 14 C 0.011 3.989 15 N -0.120 5.120 16 N -0.007 5.007 17 N -0.165 5.165 18 H 0.314 0.686 19 N -0.122 5.122 20 C 0.362 3.638 21 O -0.376 6.376 22 N -0.301 5.301 23 C -0.057 4.057 24 C 0.397 3.603 25 O -0.413 6.413 26 N -0.268 5.268 27 C -0.083 4.083 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.942 -11.080 -4.514 12.320 hybrid contribution 0.169 0.468 0.153 0.521 sum -2.773 -10.611 -4.361 11.802 Atomic orbital electron populations 1.22474 0.83758 1.03557 1.01264 1.59625 1.09243 1.20293 1.30354 1.20648 0.95849 0.78517 1.00099 1.21008 1.40194 0.97507 0.95515 0.90703 1.24947 0.94966 0.96949 0.97469 1.69918 1.40734 1.10804 1.32325 0.86395 0.78837 0.77850 0.83776 1.20588 1.21405 1.19572 1.20549 0.84029 0.89312 0.80411 1.16951 1.22062 0.95575 0.89435 1.22090 0.96262 0.87625 0.92925 1.75992 1.19372 1.22380 0.94271 1.78423 1.08318 0.90712 1.23289 1.51123 1.47128 1.13198 1.05096 0.68617 1.79206 1.25019 1.18311 0.89694 1.16419 0.79318 0.86379 0.81668 1.90907 1.44206 1.18245 1.84223 1.46106 1.56327 1.16311 1.11390 1.21850 1.00212 0.98024 0.85654 1.15851 0.78882 0.80803 0.84755 1.90980 1.59690 1.68640 1.22018 1.46438 1.54645 1.19415 1.06288 1.23002 1.01034 0.79572 1.04662 0.91711 0.87837 0.95100 0.94687 0.95322 0.92638 0.87972 0.90558 0.90509 0.88463 0.88876 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.11 60.06 0.55 1.07 16 2 N -0.47 -8.78 2.86 -181.74 -0.52 -9.30 16 3 C 0.17 3.69 3.28 -4.98 -0.02 3.68 16 4 C -0.50 -12.43 8.48 -34.44 -0.29 -12.72 16 5 H 0.07 1.88 7.76 -52.49 -0.41 1.47 16 6 C 0.06 1.50 5.46 -17.82 -0.10 1.40 16 7 N -0.90 -23.99 13.29 55.43 0.74 -23.26 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 12 C 0.46 8.13 5.21 -152.84 -0.80 7.33 16 13 C -0.23 -4.09 5.93 -104.30 -0.62 -4.71 16 14 C 0.29 5.51 7.85 -156.41 -1.23 4.28 16 15 N -0.24 -4.66 10.81 32.10 0.35 -4.32 16 16 N -0.01 -0.19 13.42 60.35 0.81 0.62 16 17 N -0.32 -4.48 8.44 60.35 0.51 -3.97 16 18 H 0.46 4.09 8.96 -331.92 -2.98 1.12 16 19 N -0.28 -4.88 11.65 32.11 0.37 -4.50 16 20 C 0.57 9.86 7.43 -15.04 -0.11 9.75 16 21 O -0.50 -9.43 14.97 5.06 0.08 -9.35 16 22 N -0.56 -8.60 2.95 -131.61 -0.39 -8.99 16 23 C 0.08 1.00 9.95 59.84 0.60 1.59 16 24 C 0.69 11.27 8.11 -87.49 -0.71 10.56 16 25 O -0.54 -9.31 15.65 5.29 0.08 -9.23 16 26 N -0.55 -8.78 3.00 -127.81 -0.38 -9.16 16 27 C 0.06 0.83 8.10 59.85 0.48 1.32 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.10 1.67 7.28 -51.93 -0.38 1.29 16 30 H 0.03 0.41 5.66 -51.93 -0.29 0.11 16 31 H 0.04 0.86 7.93 -51.93 -0.41 0.45 16 32 H 0.03 0.61 4.33 -51.93 -0.22 0.38 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.10 1.17 6.87 -51.93 -0.36 0.81 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.57 7.01 -51.93 -0.36 1.21 16 38 H 0.09 1.21 7.22 -51.93 -0.37 0.84 16 39 H 0.10 1.44 3.73 -51.93 -0.19 1.24 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -31.57 326.26 -7.09 -38.65 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.38 Total: -0.89 kcal Atomic # 6 Polarization: 25.80 SS G_CDS: -2.24 Total: 23.56 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: 1.48 Total: -62.88 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.16 Total: -18.58 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.57 -7.09 -38.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609274237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.997 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds