Wall clock time and date at job start Fri Apr 10 2020 18:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 110.78405 * 2 1 4 4 C 1.54328 * 110.71963 * 236.75870 * 2 1 3 5 5 N 1.47020 * 107.27319 * 263.83613 * 4 2 1 6 6 C 1.36933 * 125.64739 * 181.09580 * 5 4 2 7 7 H 1.08000 * 120.00409 * 359.97438 * 6 5 4 8 8 C 1.38819 * 119.99940 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99657 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99997 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47362 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47198 * 120.00330 * 10 8 6 13 13 H 1.48500 * 109.47335 * 240.00284 * 10 8 6 14 14 C 1.47423 * 108.70217 * 1.05147 * 5 4 2 15 15 C 1.54907 * 104.83481 * 335.87965 * 14 5 4 16 16 H 1.09002 * 111.00447 * 155.07987 * 15 14 5 17 17 N 1.46508 * 111.00222 * 278.89414 * 15 14 5 18 18 C 1.34775 * 119.99912 * 270.41786 * 17 15 14 19 19 O 1.21684 * 119.99980 * 0.02562 * 18 17 15 20 20 C 1.46767 * 120.00405 * 179.97438 * 18 17 15 21 21 C 1.36058 * 125.66114 * 179.97438 * 20 18 17 22 22 C 1.41727 * 106.62783 * 179.97438 * 21 20 18 23 23 C 1.47488 * 126.77271 * 179.97438 * 22 21 20 24 24 N 1.34778 * 120.00039 * 180.02562 * 23 22 21 25 25 O 1.21593 * 120.00184 * 359.97438 * 23 22 21 26 26 C 1.37812 * 106.45208 * 359.97438 * 22 21 20 27 27 O 1.33495 * 108.34182 * 359.77201 * 26 22 21 28 28 H 1.09004 * 109.47225 * 296.76456 * 1 2 3 29 29 H 1.09003 * 109.46992 * 56.75817 * 1 2 3 30 30 H 1.08999 * 109.47522 * 176.76310 * 1 2 3 31 31 H 1.08999 * 109.47257 * 183.24214 * 3 2 1 32 32 H 1.08998 * 109.46694 * 303.23847 * 3 2 1 33 33 H 1.08996 * 109.47026 * 63.23627 * 3 2 1 34 34 H 1.08997 * 109.88302 * 144.41315 * 4 2 1 35 35 H 1.09005 * 110.01202 * 23.32179 * 4 2 1 36 36 H 0.96998 * 119.99257 * 179.97438 * 9 8 6 37 37 H 1.09003 * 110.36873 * 217.03262 * 14 5 4 38 38 H 1.09002 * 110.35997 * 94.71597 * 14 5 4 39 39 H 0.96992 * 119.99926 * 90.41947 * 17 15 14 40 40 H 1.07996 * 126.68032 * 359.92758 * 21 20 18 41 41 H 0.97004 * 119.99704 * 359.97438 * 24 23 22 42 42 H 0.96993 * 120.00318 * 180.02562 * 24 23 22 43 43 H 1.07995 * 125.82863 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0760 -0.7913 -1.2073 5 7 2.3714 -2.1532 -0.7390 6 6 2.8942 -3.1634 -1.5015 7 1 3.1249 -2.9905 -2.5423 8 6 3.1278 -4.4097 -0.9366 9 7 2.8463 -4.6206 0.3318 10 14 3.8404 -5.7879 -1.9768 11 1 4.0661 -5.2980 -3.3603 12 1 5.1314 -6.2322 -1.3927 13 1 2.8907 -6.9292 -2.0042 14 6 2.0125 -2.2509 0.6875 15 6 2.0789 -0.7955 1.2137 16 1 1.4395 -0.6663 2.0870 17 7 3.4594 -0.4086 1.5152 18 6 3.9675 -0.6275 2.7442 19 8 3.2798 -1.1470 3.6032 20 6 5.3506 -0.2405 3.0462 21 6 5.9777 -0.4066 4.2422 22 6 7.2909 0.1031 4.0858 23 6 8.3501 0.1437 5.1113 24 7 9.5576 0.6627 4.8128 25 8 8.1338 -0.2902 6.2264 26 6 7.3827 0.5532 2.7865 27 8 6.2131 0.3330 2.1820 28 1 -0.3634 0.4628 0.9176 29 1 -0.3633 0.5634 -0.8595 30 1 -0.3634 -1.0260 -0.0580 31 1 3.1610 1.4061 -0.0581 32 1 1.6751 1.9700 -0.8595 33 1 1.7691 1.9343 0.9175 34 1 2.9867 -0.3208 -1.5776 35 1 1.3282 -0.8258 -1.9997 36 1 3.0092 -5.4915 0.7263 37 1 2.7292 -2.8789 1.2169 38 1 1.0038 -2.6488 0.7984 39 1 4.0077 0.0051 0.8304 40 1 5.5565 -0.8413 5.1365 41 1 9.7301 1.0092 3.9233 42 1 10.2543 0.6891 5.4870 43 1 8.2534 1.0039 2.3337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975019422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:14 Heat of formation + Delta-G solvation = -31.941207 kcal Electronic energy + Delta-G solvation = -27589.978263 eV Core-core repulsion = 23637.677074 eV Total energy + Delta-G solvation = -3952.301190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.91154 -39.68656 -39.31206 -37.87524 -34.15423 -33.90177 -33.30685 -32.87665 -30.73213 -30.20545 -28.11503 -26.85414 -25.63383 -24.22812 -24.01037 -22.61880 -21.02348 -20.34696 -19.75628 -19.14624 -18.35439 -17.21121 -16.76149 -16.57953 -16.46504 -16.11918 -15.84977 -14.79135 -14.68020 -14.40295 -14.13666 -13.87156 -13.83601 -13.66519 -13.19823 -13.17745 -12.84660 -12.71640 -12.21977 -11.94423 -11.78440 -11.32824 -11.19871 -11.03135 -10.80277 -10.46767 -10.44342 -10.22521 -10.18477 -10.04252 -10.02960 -9.89174 -9.79169 -9.71334 -8.93194 -8.70619 -8.42984 -6.82906 -5.64351 -3.07398 0.87751 1.50639 2.48832 3.09166 3.13136 3.39109 3.42590 3.44094 3.47377 3.56654 4.30006 4.47504 4.48066 4.83590 4.93974 5.20876 5.25756 5.33346 5.45201 5.51205 5.56811 5.60780 5.75791 5.85869 5.99743 6.06359 6.07285 6.14613 6.23013 6.35608 6.45125 6.46954 6.52162 6.58279 6.64924 6.69269 6.92445 6.99859 7.44721 7.61144 7.80452 7.91499 7.97348 8.36926 8.45294 9.20799 9.82366 10.46047 11.38590 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.003981 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.562062 B = 7031.943325 C = 8452.254013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.132 4.132 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.226 4.226 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.916 5.916 10 Si 0.912 3.088 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.145 3.855 15 C 0.121 3.879 16 H 0.091 0.909 17 N -0.687 5.687 18 C 0.599 3.401 19 O -0.517 6.517 20 C -0.058 4.058 21 C -0.078 4.078 22 C -0.244 4.244 23 C 0.595 3.405 24 N -0.853 5.853 25 O -0.535 6.535 26 C 0.037 3.963 27 O -0.147 6.147 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.021 0.979 35 H 0.025 0.975 36 H 0.252 0.748 37 H 0.114 0.886 38 H 0.024 0.976 39 H 0.401 0.599 40 H 0.170 0.830 41 H 0.399 0.601 42 H 0.406 0.594 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.719 16.203 2.592 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.087 4.087 3 C -0.189 4.189 4 C 0.016 3.984 5 N -0.327 5.327 6 C -0.354 4.354 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.743 3.257 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.020 3.980 15 C 0.016 3.984 16 H 0.109 0.891 17 N -0.336 5.336 18 C 0.383 3.617 19 O -0.395 6.395 20 C -0.110 4.110 21 C -0.099 4.099 22 C -0.249 4.249 23 C 0.381 3.619 24 N -0.417 5.417 25 O -0.411 6.411 26 C -0.037 4.037 27 O -0.040 6.040 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.131 0.869 38 H 0.042 0.958 39 H 0.237 0.763 40 H 0.188 0.812 41 H 0.227 0.773 42 H 0.238 0.762 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 7.823 15.327 3.548 17.570 hybrid contribution 1.244 -0.437 -1.044 1.682 sum 9.066 14.890 2.503 17.611 Atomic orbital electron populations 1.21689 0.93362 1.02586 1.00971 1.21842 0.96130 0.94556 0.96220 1.21728 1.00407 0.95414 1.01395 1.21419 0.96505 0.86786 0.93648 1.44463 1.74237 1.06711 1.07309 1.19067 1.34186 0.89230 0.92897 0.90498 1.24792 1.01679 0.97631 0.96338 1.69799 1.53562 1.22276 1.10821 0.86045 0.78419 0.82248 0.79032 1.20591 1.21833 1.21733 1.22331 1.00334 0.90192 0.85179 1.22646 0.80540 0.98535 0.96634 0.89129 1.45709 1.15191 1.60976 1.11688 1.16437 0.82632 0.79213 0.83400 1.90893 1.57826 1.43450 1.47287 1.22315 0.92520 1.06643 0.89528 1.21814 0.91508 0.98235 0.98369 1.20577 0.97045 1.11954 0.95296 1.17250 0.81541 0.76621 0.86504 1.43651 1.14526 1.65678 1.17814 1.90854 1.81077 1.46832 1.22377 1.24951 0.88317 0.98961 0.91436 1.83966 1.20367 1.60167 1.39517 0.92984 0.92626 0.91663 0.92933 0.92610 0.92750 0.96075 0.95744 0.93669 0.86862 0.95848 0.76329 0.81207 0.77278 0.76235 0.76701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.41 37.15 0.31 -1.56 16 2 C -0.09 -1.39 0.80 -152.67 -0.12 -1.51 16 3 C -0.13 -1.67 8.07 37.16 0.30 -1.37 16 4 C 0.14 2.78 6.41 -3.06 -0.02 2.76 16 5 N -0.60 -14.74 3.39 -170.07 -0.58 -15.32 16 6 C -0.23 -6.14 10.27 -15.06 -0.15 -6.30 16 7 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.00 10.09 55.49 0.56 -26.44 16 10 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.15 3.50 5.27 -2.53 -0.01 3.49 16 15 C 0.12 2.29 2.61 -65.78 -0.17 2.12 16 16 H 0.09 1.72 7.53 -51.93 -0.39 1.32 16 17 N -0.69 -12.04 4.62 -53.00 -0.24 -12.29 16 18 C 0.60 11.06 7.79 -12.81 -0.10 10.96 16 19 O -0.52 -11.17 16.54 5.20 0.09 -11.09 16 20 C -0.06 -0.91 7.09 -36.92 -0.26 -1.17 16 21 C -0.08 -1.17 10.41 -39.03 -0.41 -1.58 16 22 C -0.24 -2.89 6.16 -104.95 -0.65 -3.54 16 23 C 0.59 6.92 8.09 -12.49 -0.10 6.82 16 24 N -0.85 -5.27 8.86 30.45 0.27 -5.00 16 25 O -0.53 -8.66 17.77 5.28 0.09 -8.56 16 26 C 0.04 0.33 11.64 30.58 0.36 0.68 16 27 O -0.15 -1.84 10.33 6.18 0.06 -1.77 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.08 7.57 -51.93 -0.39 0.69 16 31 H 0.05 0.65 6.42 -51.93 -0.33 0.31 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.02 0.40 7.76 -51.93 -0.40 0.00 16 35 H 0.02 0.48 7.85 -51.93 -0.41 0.08 16 36 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.11 3.21 5.87 -51.93 -0.30 2.90 16 38 H 0.02 0.61 7.80 -51.93 -0.41 0.20 16 39 H 0.40 6.39 6.77 -40.82 -0.28 6.12 16 40 H 0.17 2.66 8.06 -52.49 -0.42 2.24 16 41 H 0.40 1.05 7.78 -40.82 -0.32 0.74 16 42 H 0.41 2.01 8.93 -40.82 -0.36 1.65 16 43 H 0.22 0.65 7.46 -52.49 -0.39 0.25 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -35.94 359.51 -6.13 -42.07 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.65 Total: 6.46 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -1.13 Total: 9.47 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.01 Total: -59.05 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: 0.24 Total: -21.42 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.94 -6.13 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975019422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.128 kcal (2) G-P(sol) polarization free energy of solvation -35.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds