Wall clock time and date at job start Fri Apr 10 2020 18:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 110.78405 * 2 1 4 4 C 1.54328 * 110.71963 * 236.75870 * 2 1 3 5 5 N 1.47020 * 107.27319 * 263.83613 * 4 2 1 6 6 C 1.36933 * 125.64739 * 181.09580 * 5 4 2 7 7 H 1.08000 * 120.00409 * 359.97438 * 6 5 4 8 8 C 1.38819 * 119.99940 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99657 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99997 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47362 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47198 * 120.00330 * 10 8 6 13 13 H 1.48500 * 109.47335 * 240.00284 * 10 8 6 14 14 C 1.47423 * 108.70217 * 1.05147 * 5 4 2 15 15 C 1.54907 * 104.83481 * 335.87965 * 14 5 4 16 16 H 1.09002 * 111.00447 * 155.07987 * 15 14 5 17 17 N 1.46508 * 111.00222 * 278.89414 * 15 14 5 18 18 C 1.34775 * 119.99912 * 270.41786 * 17 15 14 19 19 O 1.21684 * 119.99980 * 0.02562 * 18 17 15 20 20 C 1.46767 * 120.00405 * 179.97438 * 18 17 15 21 21 C 1.36058 * 125.66114 * 179.97438 * 20 18 17 22 22 C 1.41727 * 106.62783 * 179.97438 * 21 20 18 23 23 C 1.47488 * 126.77271 * 179.97438 * 22 21 20 24 24 N 1.34778 * 120.00039 * 180.02562 * 23 22 21 25 25 O 1.21593 * 120.00184 * 359.97438 * 23 22 21 26 26 C 1.37812 * 106.45208 * 359.97438 * 22 21 20 27 27 O 1.33495 * 108.34182 * 359.77201 * 26 22 21 28 28 H 1.09004 * 109.47225 * 296.76456 * 1 2 3 29 29 H 1.09003 * 109.46992 * 56.75817 * 1 2 3 30 30 H 1.08999 * 109.47522 * 176.76310 * 1 2 3 31 31 H 1.08999 * 109.47257 * 183.24214 * 3 2 1 32 32 H 1.08998 * 109.46694 * 303.23847 * 3 2 1 33 33 H 1.08996 * 109.47026 * 63.23627 * 3 2 1 34 34 H 1.08997 * 109.88302 * 144.41315 * 4 2 1 35 35 H 1.09005 * 110.01202 * 23.32179 * 4 2 1 36 36 H 0.96998 * 119.99257 * 179.97438 * 9 8 6 37 37 H 1.09003 * 110.36873 * 217.03262 * 14 5 4 38 38 H 1.09002 * 110.35997 * 94.71597 * 14 5 4 39 39 H 0.96992 * 119.99926 * 90.41947 * 17 15 14 40 40 H 1.07996 * 126.68032 * 359.92758 * 21 20 18 41 41 H 0.97004 * 119.99704 * 359.97438 * 24 23 22 42 42 H 0.96993 * 120.00318 * 180.02562 * 24 23 22 43 43 H 1.07995 * 125.82863 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0760 -0.7913 -1.2073 5 7 2.3714 -2.1532 -0.7390 6 6 2.8942 -3.1634 -1.5015 7 1 3.1249 -2.9905 -2.5423 8 6 3.1278 -4.4097 -0.9366 9 7 2.8463 -4.6206 0.3318 10 14 3.8404 -5.7879 -1.9768 11 1 4.0661 -5.2980 -3.3603 12 1 5.1314 -6.2322 -1.3927 13 1 2.8907 -6.9292 -2.0042 14 6 2.0125 -2.2509 0.6875 15 6 2.0789 -0.7955 1.2137 16 1 1.4395 -0.6663 2.0870 17 7 3.4594 -0.4086 1.5152 18 6 3.9675 -0.6275 2.7442 19 8 3.2798 -1.1470 3.6032 20 6 5.3506 -0.2405 3.0462 21 6 5.9777 -0.4066 4.2422 22 6 7.2909 0.1031 4.0858 23 6 8.3501 0.1437 5.1113 24 7 9.5576 0.6627 4.8128 25 8 8.1338 -0.2902 6.2264 26 6 7.3827 0.5532 2.7865 27 8 6.2131 0.3330 2.1820 28 1 -0.3634 0.4628 0.9176 29 1 -0.3633 0.5634 -0.8595 30 1 -0.3634 -1.0260 -0.0580 31 1 3.1610 1.4061 -0.0581 32 1 1.6751 1.9700 -0.8595 33 1 1.7691 1.9343 0.9175 34 1 2.9867 -0.3208 -1.5776 35 1 1.3282 -0.8258 -1.9997 36 1 3.0092 -5.4915 0.7263 37 1 2.7292 -2.8789 1.2169 38 1 1.0038 -2.6488 0.7984 39 1 4.0077 0.0051 0.8304 40 1 5.5565 -0.8413 5.1365 41 1 9.7301 1.0092 3.9233 42 1 10.2543 0.6891 5.4870 43 1 8.2534 1.0039 2.3337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975019422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:13 Heat of formation + Delta-G solvation = -61.517395 kcal Electronic energy + Delta-G solvation = -27591.260783 eV Core-core repulsion = 23637.677074 eV Total energy + Delta-G solvation = -3953.583709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.92356 -41.16996 -40.24378 -39.40586 -35.72545 -35.02076 -34.64018 -33.99259 -32.60336 -31.34350 -29.69135 -28.04367 -27.41013 -25.56678 -25.06447 -24.06696 -22.22689 -21.93770 -21.01713 -20.34349 -19.53751 -18.70758 -18.06531 -17.64968 -17.51050 -17.31964 -17.09754 -16.58585 -15.87181 -15.72977 -15.60987 -15.34178 -15.32093 -14.79719 -14.64814 -14.32735 -14.16345 -13.75879 -13.74393 -13.66013 -13.03555 -13.01043 -12.87795 -12.64030 -12.57582 -12.06201 -11.82674 -11.78134 -11.51843 -11.44206 -11.38167 -11.31725 -11.24649 -10.77823 -10.74478 -10.18342 -9.80136 -8.84619 -7.75513 -5.20410 -0.09987 0.43573 1.44632 1.44991 1.45706 1.56063 1.96393 2.12076 2.28342 2.49035 2.53359 3.34723 3.43376 3.53698 3.58357 3.69300 3.90440 3.96876 4.07603 4.28032 4.40865 4.45318 4.50593 4.67814 4.75738 4.84905 4.88347 4.93957 4.94530 5.02710 5.11300 5.20572 5.26570 5.34596 5.46892 5.52567 5.54109 5.66478 5.81967 5.84832 6.31014 6.40597 6.46100 7.04508 7.09753 7.27742 7.79644 8.43126 9.25355 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.003981 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.562062 B = 7031.943325 C = 8452.254013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.125 4.125 4 C 0.137 3.863 5 N -0.618 5.618 6 C -0.230 4.230 7 H 0.086 0.914 8 C -0.069 4.069 9 N -0.950 5.950 10 Si 0.976 3.024 11 H -0.261 1.261 12 H -0.296 1.296 13 H -0.297 1.297 14 C 0.153 3.847 15 C 0.133 3.867 16 H 0.086 0.914 17 N -0.678 5.678 18 C 0.595 3.405 19 O -0.563 6.563 20 C -0.086 4.086 21 C -0.086 4.086 22 C -0.270 4.270 23 C 0.594 3.406 24 N -0.821 5.821 25 O -0.594 6.594 26 C 0.094 3.906 27 O -0.147 6.147 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.028 0.972 36 H 0.242 0.758 37 H 0.068 0.932 38 H -0.010 1.010 39 H 0.411 0.589 40 H 0.147 0.853 41 H 0.421 0.579 42 H 0.416 0.584 43 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.121 19.523 0.196 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.182 4.182 4 C 0.013 3.987 5 N -0.344 5.344 6 C -0.359 4.359 7 H 0.104 0.896 8 C -0.261 4.261 9 N -0.600 5.600 10 Si 0.805 3.195 11 H -0.185 1.185 12 H -0.224 1.224 13 H -0.224 1.224 14 C 0.026 3.974 15 C 0.027 3.973 16 H 0.104 0.896 17 N -0.327 5.327 18 C 0.382 3.618 19 O -0.444 6.444 20 C -0.137 4.137 21 C -0.108 4.108 22 C -0.274 4.274 23 C 0.381 3.619 24 N -0.386 5.386 25 O -0.475 6.475 26 C 0.021 3.979 27 O -0.039 6.039 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.008 0.992 39 H 0.249 0.751 40 H 0.165 0.835 41 H 0.253 0.747 42 H 0.249 0.751 43 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 10.271 18.729 1.063 21.387 hybrid contribution 0.600 -1.407 -0.336 1.566 sum 10.871 17.322 0.727 20.464 Atomic orbital electron populations 1.21698 0.92222 1.01354 1.03161 1.21832 0.96991 0.95974 0.92496 1.21700 1.00759 0.92576 1.03207 1.21667 0.97276 0.84686 0.95111 1.44691 1.73965 1.08345 1.07387 1.19487 1.32930 0.89994 0.93491 0.89603 1.25618 1.02967 1.00164 0.97373 1.70117 1.55344 1.21949 1.12587 0.85035 0.76966 0.79084 0.78424 1.18473 1.22367 1.22437 1.21959 0.96986 0.93020 0.85397 1.22331 0.81646 0.95772 0.97562 0.89584 1.45570 1.14752 1.60629 1.11779 1.16821 0.83745 0.78251 0.83013 1.90854 1.59569 1.45463 1.48556 1.21509 0.92011 1.09927 0.90261 1.21853 0.93451 0.97882 0.97566 1.20614 0.95988 1.13717 0.97126 1.17277 0.82709 0.76439 0.85512 1.43367 1.12654 1.63327 1.19217 1.90834 1.82257 1.49833 1.24589 1.26232 0.87935 0.94021 0.89711 1.83972 1.21079 1.59912 1.38957 0.91164 0.89999 0.94698 0.92331 0.90146 0.91515 0.94565 0.95409 0.94832 0.91385 0.99243 0.75140 0.83470 0.74697 0.75075 0.69824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.41 71.98 0.61 -2.90 16 2 C -0.07 -2.19 0.80 -50.99 -0.04 -2.23 16 3 C -0.12 -2.71 8.07 71.98 0.58 -2.12 16 4 C 0.14 5.17 6.41 86.73 0.56 5.73 16 5 N -0.62 -30.86 3.39 -691.98 -2.35 -33.20 16 6 C -0.23 -12.66 10.27 84.04 0.86 -11.80 16 7 H 0.09 4.47 7.83 -2.91 -0.02 4.44 16 8 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 9 N -0.95 -58.99 10.09 21.65 0.22 -58.78 16 10 Si 0.98 46.28 29.55 68.60 2.03 48.30 16 11 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 12 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 13 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 14 C 0.15 7.79 5.27 86.85 0.46 8.25 16 15 C 0.13 5.11 2.61 46.38 0.12 5.23 16 16 H 0.09 3.40 7.53 -2.39 -0.02 3.38 16 17 N -0.68 -23.96 4.62 -439.82 -2.03 -25.99 16 18 C 0.59 22.88 7.79 86.47 0.67 23.56 16 19 O -0.56 -26.18 16.54 -4.30 -0.07 -26.25 16 20 C -0.09 -2.68 7.09 23.99 0.17 -2.51 16 21 C -0.09 -2.66 10.41 22.63 0.24 -2.42 16 22 C -0.27 -5.90 6.16 -20.08 -0.12 -6.03 16 23 C 0.59 12.88 8.09 86.68 0.70 13.58 16 24 N -0.82 -7.18 8.86 -175.85 -1.56 -8.74 16 25 O -0.59 -19.54 17.77 -4.01 -0.07 -19.61 16 26 C 0.09 1.24 11.64 67.72 0.79 2.03 16 27 O -0.15 -3.24 10.33 -0.79 -0.01 -3.24 16 28 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 30 H 0.03 1.16 7.57 -2.39 -0.02 1.15 16 31 H 0.06 1.21 6.42 -2.39 -0.02 1.20 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.04 1.28 7.76 -2.39 -0.02 1.26 16 35 H 0.03 1.05 7.85 -2.38 -0.02 1.03 16 36 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.07 4.13 5.87 -2.39 -0.01 4.12 16 38 H -0.01 -0.57 7.80 -2.39 -0.02 -0.59 16 39 H 0.41 12.59 6.77 -92.71 -0.63 11.97 16 40 H 0.15 5.11 8.06 -2.91 -0.02 5.09 16 41 H 0.42 -0.09 7.78 -92.71 -0.72 -0.81 16 42 H 0.42 2.79 8.93 -92.71 -0.83 1.97 16 43 H 0.29 -0.60 7.46 -2.91 -0.02 -0.62 16 Total: -1.00 -87.62 359.51 1.12 -86.50 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -1.09 Total: 16.15 kcal Atomic # 6 Polarization: 18.82 SS G_CDS: 6.05 Total: 24.87 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -5.72 Total: -126.71 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -0.15 Total: -49.11 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -87.62 1.12 -86.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975019422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.982 kcal (2) G-P(sol) polarization free energy of solvation -87.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds