Wall clock time and date at job start Fri Apr 10 2020 18:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36012 * 116.99886 * 2 1 4 4 C 1.35841 * 120.31569 * 359.97438 * 3 2 1 5 5 N 1.35441 * 120.78057 * 180.02562 * 4 3 2 6 6 H 0.96995 * 119.30038 * 180.02562 * 5 4 3 7 7 C 1.36432 * 121.40562 * 0.04513 * 5 4 3 8 8 C 1.48075 * 119.71666 * 179.97438 * 7 5 4 9 9 O 1.21510 * 119.99893 * 170.54230 * 8 7 5 10 10 N 1.34775 * 120.00003 * 350.54425 * 8 7 5 11 11 C 1.47426 * 125.64914 * 353.32935 * 10 8 7 12 12 C 1.54912 * 104.83474 * 204.16876 * 11 10 8 13 13 C 1.55154 * 101.57889 * 322.99146 * 12 11 10 14 14 H 1.08995 * 110.72184 * 276.95859 * 13 12 11 15 15 N 1.46503 * 110.71939 * 153.86261 * 13 12 11 16 16 C 1.36943 * 119.99821 * 86.45529 * 15 13 12 17 17 H 1.07995 * 120.00027 * 0.02562 * 16 15 13 18 18 C 1.38805 * 119.99989 * 180.02562 * 16 15 13 19 19 N 1.31627 * 119.99832 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00068 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47243 * 269.99971 * 20 18 16 22 22 H 1.48501 * 109.47256 * 149.99859 * 20 18 16 23 23 H 1.48496 * 109.47039 * 30.00052 * 20 18 16 24 24 C 1.47022 * 125.65024 * 173.38109 * 10 8 7 25 25 H 1.08997 * 109.88389 * 59.47931 * 24 10 8 26 26 C 1.53010 * 109.87865 * 298.31634 * 24 10 8 27 27 C 1.36166 * 120.56260 * 0.25114 * 7 5 4 28 28 C 1.41577 * 120.30956 * 180.02562 * 3 2 1 29 29 O 1.22262 * 120.65814 * 359.97438 * 28 3 2 30 30 H 1.09004 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47434 * 300.00236 * 1 2 3 32 32 H 1.09003 * 109.46775 * 60.00145 * 1 2 3 33 33 H 1.07999 * 119.61412 * 0.02562 * 4 3 2 34 34 H 1.09000 * 110.36423 * 85.32909 * 11 10 8 35 35 H 1.09003 * 110.37001 * 323.00920 * 11 10 8 36 36 H 1.08994 * 111.00675 * 204.91936 * 12 11 10 37 37 H 1.09000 * 111.00690 * 81.06365 * 12 11 10 38 38 H 0.97002 * 119.99983 * 266.45257 * 15 13 12 39 39 H 0.96994 * 120.00064 * 359.97438 * 19 18 16 40 40 H 1.08998 * 109.46771 * 302.19231 * 26 24 10 41 41 H 1.09001 * 109.46582 * 62.18925 * 26 24 10 42 42 H 1.08998 * 109.46742 * 182.19168 * 26 24 10 43 43 H 1.08001 * 120.40791 * 179.70350 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3129 2.3552 -0.0005 5 7 1.9180 3.5669 -0.0010 6 1 1.3733 4.3695 -0.0010 7 6 3.2774 3.6828 -0.0020 8 6 3.8995 5.0265 -0.0031 9 8 5.0968 5.1418 0.1690 10 7 3.1378 6.1217 -0.1950 11 6 1.7072 6.1216 -0.5513 12 6 1.4711 7.4867 -1.2446 13 6 2.3914 8.4206 -0.4150 14 1 1.8895 8.7469 0.4958 15 7 2.8143 9.5740 -1.2132 16 6 2.0256 10.6920 -1.2722 17 1 1.0922 10.7235 -0.7299 18 6 2.4260 11.7846 -2.0288 19 7 3.5639 11.7463 -2.6893 20 14 1.3499 13.3094 -2.1098 21 1 0.4005 13.1856 -3.2449 22 1 2.2039 14.5081 -2.3073 23 1 0.5898 13.4467 -0.8415 24 6 3.5960 7.5143 -0.0846 25 1 4.4028 7.6964 -0.7945 26 6 4.0802 7.7913 1.3402 27 6 4.0668 2.5734 -0.0076 28 6 3.4599 1.2937 -0.0005 29 8 4.1430 0.2797 -0.0006 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2345 2.2973 -0.0005 34 1 1.0929 6.0403 0.3455 35 1 1.4873 5.3042 -1.2381 36 1 0.4281 7.7918 -1.1616 37 1 1.7853 7.4546 -2.2878 38 1 3.6529 9.5458 -1.7000 39 1 4.1228 10.9547 -2.6470 40 1 3.2733 7.5879 2.0441 41 1 4.9305 7.1479 1.5664 42 1 4.3818 8.8353 1.4248 43 1 5.1426 2.6680 -0.0131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986557334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:19 Heat of formation + Delta-G solvation = -26.176583 kcal Electronic energy + Delta-G solvation = -27230.434768 eV Core-core repulsion = 23278.383551 eV Total energy + Delta-G solvation = -3952.051217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.85489 -40.28693 -38.51274 -37.88170 -37.83156 -34.71883 -32.32495 -31.85003 -31.41666 -30.68745 -29.17049 -27.96644 -25.52168 -25.00672 -23.62716 -23.26493 -22.50826 -21.19004 -20.11652 -19.01341 -18.30271 -17.63690 -17.42222 -16.63831 -16.43981 -16.26955 -15.93063 -15.38436 -15.01053 -14.84061 -14.70249 -14.26774 -14.09432 -13.91105 -13.74323 -13.42524 -13.21329 -13.14200 -12.99051 -12.65963 -12.33537 -12.04127 -11.79812 -11.76766 -11.54004 -11.19262 -10.82123 -10.73366 -10.51841 -10.41304 -10.14008 -9.74255 -9.72220 -9.37366 -9.13245 -8.93382 -7.94624 -7.28501 -6.28469 -3.32524 0.42342 0.88908 2.24616 2.49091 2.60198 2.91298 3.40720 3.44586 3.46138 3.59104 3.81860 4.08577 4.31355 4.40585 4.49437 4.61302 4.73168 4.73628 4.74858 4.79077 4.94297 5.08032 5.12061 5.22017 5.38193 5.44973 5.46680 5.54584 5.67826 5.71317 5.87854 5.91015 6.07309 6.15953 6.23457 6.30080 6.35740 6.40236 6.56636 6.86972 7.13010 7.60240 7.68661 7.79197 8.56022 8.98205 9.85006 9.97170 11.18977 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024758 B = 0.002719 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.677496 B =10296.038410 C =11033.510162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.288 6.288 3 C -0.033 4.033 4 C 0.025 3.975 5 N -0.572 5.572 6 H 0.425 0.575 7 C 0.130 3.870 8 C 0.570 3.430 9 O -0.501 6.501 10 N -0.605 5.605 11 C 0.070 3.930 12 C -0.151 4.151 13 C 0.183 3.817 14 H 0.070 0.930 15 N -0.724 5.724 16 C -0.341 4.341 17 H 0.068 0.932 18 C -0.038 4.038 19 N -0.937 5.937 20 Si 1.083 2.917 21 H -0.294 1.294 22 H -0.287 1.287 23 H -0.294 1.294 24 C 0.126 3.874 25 H 0.083 0.917 26 C -0.156 4.156 27 C -0.215 4.215 28 C 0.401 3.599 29 O -0.498 6.498 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.170 0.830 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.370 0.630 39 H 0.257 0.743 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 -16.765 6.717 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.200 6.200 3 C -0.085 4.085 4 C -0.103 4.103 5 N -0.194 5.194 6 H 0.272 0.728 7 C 0.018 3.982 8 C 0.356 3.644 9 O -0.375 6.375 10 N -0.339 5.339 11 C -0.053 4.053 12 C -0.192 4.192 13 C 0.071 3.929 14 H 0.088 0.912 15 N -0.366 5.366 16 C -0.471 4.471 17 H 0.086 0.914 18 C -0.237 4.237 19 N -0.581 5.581 20 Si 0.913 3.087 21 H -0.222 1.222 22 H -0.213 1.213 23 H -0.220 1.220 24 C 0.023 3.977 25 H 0.101 0.899 26 C -0.214 4.214 27 C -0.242 4.242 28 C 0.291 3.709 29 O -0.382 6.382 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.187 0.813 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.204 0.796 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.617 -15.905 6.297 19.624 hybrid contribution -0.510 -1.130 0.449 1.319 sum -10.127 -17.035 6.746 20.934 Atomic orbital electron populations 1.23141 0.79137 1.04541 1.00958 1.86279 1.20347 1.24324 1.89045 1.20439 0.94827 0.84680 1.08531 1.21702 0.98855 0.84430 1.05279 1.41951 1.05526 1.09317 1.62654 0.72761 1.20373 0.83072 0.95480 0.99307 1.17557 0.86293 0.82034 0.78566 1.90855 1.13085 1.85037 1.48534 1.48578 1.10897 1.06540 1.67920 1.22748 0.81819 1.01453 0.99303 1.23600 1.02585 0.91965 1.01074 1.21171 0.90714 0.86788 0.94213 0.91224 1.42356 1.24628 1.13044 1.56562 1.19996 1.03211 0.94211 1.29731 0.91439 1.25826 0.99891 1.01300 0.96676 1.70864 1.12327 1.31145 1.43771 0.83197 0.74445 0.75617 0.75426 1.22188 1.21262 1.22034 1.22059 0.98816 0.78501 0.98340 0.89871 1.22063 1.01382 1.03017 0.94946 1.22469 1.02290 0.90336 1.09113 1.16776 0.86115 0.89759 0.78282 1.90856 1.65712 1.37497 1.44145 0.87868 0.92736 0.92695 0.81343 0.90645 0.90424 0.89800 0.90135 0.79599 0.93165 0.92736 0.91886 0.90583 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.29 -3.25 10.33 -35.61 -0.37 -3.61 16 3 C -0.03 -0.38 6.71 -39.17 -0.26 -0.64 16 4 C 0.02 0.18 10.22 -16.82 -0.17 0.01 16 5 N -0.57 -4.56 4.59 -9.58 -0.04 -4.60 16 6 H 0.42 2.50 3.86 -40.82 -0.16 2.34 16 7 C 0.13 1.48 6.64 -82.53 -0.55 0.94 16 8 C 0.57 7.69 7.55 -12.23 -0.09 7.60 16 9 O -0.50 -8.41 15.63 5.36 0.08 -8.33 16 10 N -0.60 -7.53 3.06 -164.03 -0.50 -8.03 16 11 C 0.07 0.65 5.00 -2.53 -0.01 0.64 16 12 C -0.15 -1.97 6.77 -24.58 -0.17 -2.14 16 13 C 0.18 3.00 3.11 -66.10 -0.21 2.79 16 14 H 0.07 1.15 7.84 -51.93 -0.41 0.74 16 15 N -0.72 -15.89 5.25 -51.65 -0.27 -16.16 16 16 C -0.34 -8.58 9.98 -15.06 -0.15 -8.73 16 17 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 18 C -0.04 -1.03 5.50 -17.43 -0.10 -1.13 16 19 N -0.94 -27.29 13.70 55.49 0.76 -26.53 16 20 Si 1.08 24.12 29.92 -169.99 -5.09 19.03 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.13 1.88 3.18 -66.95 -0.21 1.67 16 25 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 26 C -0.16 -2.21 9.10 37.16 0.34 -1.87 16 27 C -0.21 -2.83 9.53 -39.03 -0.37 -3.20 16 28 C 0.40 5.85 6.78 -37.01 -0.25 5.60 16 29 O -0.50 -9.19 17.71 -11.15 -0.20 -9.38 16 30 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.20 7.66 -51.93 -0.40 -0.20 16 32 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16 33 H 0.17 0.57 6.21 -52.49 -0.33 0.24 16 34 H 0.08 0.49 7.46 -51.93 -0.39 0.10 16 35 H 0.08 0.56 6.40 -51.93 -0.33 0.23 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.37 8.63 6.34 -40.82 -0.26 8.37 16 39 H 0.26 7.36 6.77 -40.82 -0.28 7.08 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.93 7.13 -51.93 -0.37 0.56 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.17 2.29 7.61 -52.49 -0.40 1.89 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -34.80 352.54 -6.95 -41.76 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.43 Total: 7.94 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.21 Total: 2.61 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.06 Total: -55.33 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.48 Total: -21.32 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.09 Total: 19.03 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.80 -6.95 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986557334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.580 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds