Wall clock time and date at job start Fri Apr 10 2020 18:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.58593 * 2 1 4 4 C 1.53193 * 109.58973 * 239.71535 * 2 1 3 5 5 H 1.08997 * 109.50021 * 305.42284 * 4 2 1 6 6 N 1.46503 * 109.49258 * 65.48423 * 4 2 1 7 7 C 1.34776 * 119.99722 * 204.93298 * 6 4 2 8 8 O 1.21606 * 119.99746 * 0.02562 * 7 6 4 9 9 C 1.47487 * 120.00301 * 180.02562 * 7 6 4 10 10 C 1.37810 * 126.76852 * 0.02563 * 9 7 6 11 11 O 1.33501 * 108.34174 * 180.02562 * 10 9 7 12 12 C 1.34887 * 109.88874 * 359.97438 * 11 10 9 13 13 C 1.46771 * 125.65469 * 179.97438 * 12 11 10 14 14 N 1.34772 * 119.99849 * 0.02562 * 13 12 11 15 15 O 1.21678 * 119.99792 * 179.75086 * 13 12 11 16 16 C 1.36064 * 108.69003 * 0.23940 * 12 11 10 17 17 C 1.53035 * 109.34065 * 185.45027 * 4 2 1 18 18 C 1.53044 * 109.54125 * 61.31930 * 17 4 2 19 19 C 1.53194 * 109.33695 * 298.68432 * 18 17 4 20 20 N 1.46926 * 108.77503 * 54.61488 * 19 18 17 21 21 C 1.36941 * 120.63064 * 126.41478 * 20 19 18 22 22 H 1.07995 * 120.00230 * 208.63035 * 21 20 19 23 23 C 1.38811 * 119.99838 * 28.63034 * 21 20 19 24 24 N 1.31622 * 120.00221 * 14.71825 * 23 21 20 25 25 Si 1.86800 * 120.00034 * 194.71834 * 23 21 20 26 26 H 1.48504 * 109.47344 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47272 * 119.99907 * 25 23 21 28 28 H 1.48497 * 109.47272 * 240.00021 * 25 23 21 29 29 H 1.09004 * 109.46850 * 180.28051 * 1 2 3 30 30 H 1.08994 * 109.47516 * 300.28154 * 1 2 3 31 31 H 1.09000 * 109.46928 * 60.28367 * 1 2 3 32 32 H 0.96999 * 120.00408 * 24.93783 * 6 4 2 33 33 H 1.07993 * 125.83132 * 359.97438 * 10 9 7 34 34 H 0.96996 * 119.99664 * 179.72201 * 14 13 12 35 35 H 0.96994 * 120.00221 * 359.72514 * 14 13 12 36 36 H 1.07994 * 126.68970 * 179.71576 * 16 12 11 37 37 H 1.08998 * 109.46582 * 181.36873 * 17 4 2 38 38 H 1.09003 * 109.46646 * 301.33453 * 17 4 2 39 39 H 1.08997 * 109.50190 * 178.71732 * 18 17 4 40 40 H 1.08993 * 109.49592 * 58.64472 * 18 17 4 41 41 H 1.09003 * 109.58497 * 294.83130 * 19 18 17 42 42 H 1.09005 * 109.70565 * 174.47190 * 19 18 17 43 43 H 0.96998 * 119.99926 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.6045 -1.7244 -1.2925 6 7 1.6676 0.0281 -2.4436 7 6 1.5455 -0.6030 -3.6282 8 8 1.7470 -1.7999 -3.7030 9 6 1.1675 0.1580 -4.8337 10 6 0.9088 1.5095 -4.9087 11 8 0.6018 1.8089 -6.1729 12 6 0.6510 0.6958 -6.9331 13 6 0.3743 0.6302 -8.3730 14 7 0.0375 1.7482 -9.0461 15 8 0.4539 -0.4327 -8.9600 16 6 0.9939 -0.3572 -6.1426 17 6 3.5678 -0.8440 -1.1733 18 6 3.9604 -1.6608 0.0600 19 6 3.4685 -0.9436 1.3211 20 7 2.0254 -0.6991 1.1936 21 6 1.1585 -1.1144 2.1689 22 1 0.1392 -1.3649 1.9145 23 6 1.5898 -1.2134 3.4846 24 7 2.7188 -0.6449 3.8516 25 14 0.5680 -2.1533 4.7343 26 1 -0.6471 -2.6944 4.0739 27 1 1.3704 -3.2736 5.2878 28 1 0.1685 -1.2397 5.8347 29 1 -0.3633 -1.0277 0.0050 30 1 -0.3634 0.5182 0.8874 31 1 -0.3633 0.5094 -0.8925 32 1 1.5066 0.9828 -2.3838 33 1 0.9469 2.2071 -4.0852 34 1 -0.1414 1.7056 -9.9985 35 1 -0.0259 2.5954 -8.5782 36 1 1.1120 -1.3850 -6.4524 37 1 3.9377 -1.3400 -2.0706 38 1 4.0050 0.1520 -1.1027 39 1 5.0449 -1.7625 0.0989 40 1 3.5042 -2.6490 0.0022 41 1 3.9920 0.0064 1.4288 42 1 3.6577 -1.5663 2.1955 43 1 3.0204 -0.7144 4.7709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993624544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:25 Heat of formation + Delta-G solvation = -41.056681 kcal Electronic energy + Delta-G solvation = -26992.942638 eV Core-core repulsion = 23040.246172 eV Total energy + Delta-G solvation = -3952.696466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.16347 -39.73136 -39.50415 -37.62829 -34.39949 -34.31887 -33.43348 -32.58128 -31.75306 -30.48225 -29.06834 -26.34231 -25.09424 -24.12896 -23.97700 -21.79958 -21.21751 -20.74398 -20.02041 -19.56658 -18.77664 -17.49481 -16.87780 -16.78571 -16.44453 -16.12994 -15.70266 -14.99389 -14.87233 -14.68957 -14.56910 -13.89915 -13.78682 -13.57450 -13.48553 -13.44288 -12.93334 -12.81268 -12.57565 -11.75140 -11.58226 -11.17015 -10.95131 -10.91400 -10.79141 -10.60028 -10.38484 -10.31525 -10.26385 -10.18691 -10.04404 -10.02906 -9.69406 -9.41541 -9.16889 -8.73983 -8.48645 -6.71870 -5.82196 -3.26826 0.57182 1.35190 2.15477 2.70657 2.95566 3.31026 3.34549 3.35393 3.43928 3.45756 4.18934 4.28647 4.46236 4.64331 5.13302 5.15472 5.26264 5.36296 5.37834 5.48681 5.57514 5.75449 5.82143 5.93392 6.03238 6.10801 6.16701 6.28739 6.30182 6.35707 6.49515 6.58210 6.66695 6.72730 6.79836 6.82455 6.93259 7.01997 7.38319 7.63723 7.65292 7.66971 7.78899 8.31207 8.41915 9.17061 9.79582 10.34954 11.26167 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029598 B = 0.002533 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.773103 B =11052.903357 C =11318.495799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.028 0.972 4 C 0.131 3.869 5 H 0.088 0.912 6 N -0.713 5.713 7 C 0.582 3.418 8 O -0.532 6.532 9 C -0.230 4.230 10 C 0.046 3.954 11 O -0.155 6.155 12 C -0.097 4.097 13 C 0.613 3.387 14 N -0.844 5.844 15 O -0.519 6.519 16 C -0.058 4.058 17 C -0.117 4.117 18 C -0.140 4.140 19 C 0.168 3.832 20 N -0.582 5.582 21 C -0.251 4.251 22 H 0.072 0.928 23 C 0.003 3.997 24 N -0.903 5.903 25 Si 0.902 3.098 26 H -0.277 1.277 27 H -0.289 1.289 28 H -0.291 1.291 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.393 0.607 33 H 0.223 0.777 34 H 0.410 0.590 35 H 0.407 0.593 36 H 0.171 0.829 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.019 0.981 42 H 0.092 0.908 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.289 9.775 -19.941 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.026 3.974 5 H 0.106 0.894 6 N -0.362 5.362 7 C 0.367 3.633 8 O -0.409 6.409 9 C -0.235 4.235 10 C -0.027 4.027 11 O -0.049 6.049 12 C -0.148 4.148 13 C 0.397 3.603 14 N -0.408 5.408 15 O -0.396 6.396 16 C -0.080 4.080 17 C -0.156 4.156 18 C -0.180 4.180 19 C 0.042 3.958 20 N -0.305 5.305 21 C -0.380 4.380 22 H 0.089 0.911 23 C -0.196 4.196 24 N -0.547 5.547 25 Si 0.732 3.268 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.218 1.218 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.226 0.774 33 H 0.239 0.761 34 H 0.241 0.759 35 H 0.236 0.764 36 H 0.189 0.811 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.110 0.890 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.071 8.417 -20.148 22.050 hybrid contribution -0.507 0.420 0.736 0.988 sum -3.578 8.837 -19.411 21.626 Atomic orbital electron populations 1.21828 0.95637 1.01845 1.00187 1.20550 0.93218 0.93546 0.86661 0.95502 1.21860 0.95232 0.96955 0.83394 0.89360 1.45990 1.70016 1.11958 1.08276 1.17191 0.77381 0.86722 0.81961 1.90816 1.50382 1.14331 1.85376 1.20906 1.12547 0.93976 0.96046 1.25152 0.96678 0.96147 0.84705 1.83886 1.67348 1.34871 1.18771 1.21772 1.15335 0.85093 0.92608 1.16476 0.76347 0.84338 0.83103 1.43666 1.72652 1.10725 1.13721 1.90959 1.52462 1.29020 1.67158 1.21936 0.95274 1.00430 0.90313 1.21768 0.95216 1.00121 0.98486 1.22186 0.99287 0.99753 0.96794 1.20885 0.82931 0.97314 0.94635 1.44052 1.03197 1.65087 1.18197 1.19221 0.94721 1.37841 0.86220 0.91080 1.25071 0.97784 0.99747 0.96961 1.70021 1.22881 1.44862 1.16971 0.86226 0.79693 0.79490 0.81384 1.20224 1.21550 1.21751 0.92570 0.91723 0.94334 0.77376 0.76124 0.75860 0.76378 0.81143 0.93097 0.92739 0.92953 0.92475 0.96331 0.89025 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.84 37.16 0.29 -2.12 16 2 C 0.17 3.20 3.03 -67.60 -0.20 3.00 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.13 2.26 1.99 -67.81 -0.14 2.13 16 5 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 6 N -0.71 -9.55 4.56 -54.74 -0.25 -9.80 16 7 C 0.58 8.56 7.78 -12.49 -0.10 8.46 16 8 O -0.53 -10.16 16.60 5.27 0.09 -10.08 16 9 C -0.23 -2.62 6.16 -104.95 -0.65 -3.27 16 10 C 0.05 0.34 11.64 30.58 0.36 0.70 16 11 O -0.15 -1.20 10.33 6.17 0.06 -1.14 16 12 C -0.10 -0.96 7.09 -36.92 -0.26 -1.22 16 13 C 0.61 5.93 8.06 -12.81 -0.10 5.83 16 14 N -0.84 -4.31 8.87 30.28 0.27 -4.04 16 15 O -0.52 -6.99 17.68 5.21 0.09 -6.90 16 16 C -0.06 -0.69 10.41 -39.03 -0.41 -1.10 16 17 C -0.12 -2.04 5.46 -26.69 -0.15 -2.19 16 18 C -0.14 -2.72 6.08 -26.61 -0.16 -2.88 16 19 C 0.17 3.87 5.29 -3.71 -0.02 3.85 16 20 N -0.58 -13.75 2.99 -164.77 -0.49 -14.24 16 21 C -0.25 -6.51 8.63 -15.06 -0.13 -6.64 16 22 H 0.07 1.82 6.20 -52.49 -0.33 1.49 16 23 C 0.00 0.08 4.97 -17.43 -0.09 -0.01 16 24 N -0.90 -25.34 11.09 55.49 0.62 -24.72 16 25 Si 0.90 21.24 29.58 -169.99 -5.03 16.21 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H 0.06 1.06 7.42 -51.93 -0.39 0.67 16 30 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 31 H 0.04 0.54 7.78 -51.93 -0.40 0.13 16 32 H 0.39 3.87 7.55 -40.82 -0.31 3.56 16 33 H 0.22 0.70 7.46 -52.49 -0.39 0.31 16 34 H 0.41 1.42 8.93 -40.82 -0.36 1.06 16 35 H 0.41 1.14 8.57 -40.82 -0.35 0.79 16 36 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 2.39 6.01 -51.93 -0.31 2.08 16 43 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -34.15 357.83 -6.73 -40.88 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.73 Total: 3.89 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -1.75 Total: 4.54 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.14 Total: -52.81 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.24 Total: -18.12 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.15 -6.73 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993624544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.175 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds