Wall clock time and date at job start Fri Apr 10 2020 18:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.58593 * 2 1 4 4 C 1.53193 * 109.58973 * 239.71535 * 2 1 3 5 5 H 1.08997 * 109.50021 * 305.42284 * 4 2 1 6 6 N 1.46503 * 109.49258 * 65.48423 * 4 2 1 7 7 C 1.34776 * 119.99722 * 204.93298 * 6 4 2 8 8 O 1.21606 * 119.99746 * 0.02562 * 7 6 4 9 9 C 1.47487 * 120.00301 * 180.02562 * 7 6 4 10 10 C 1.37810 * 126.76852 * 0.02563 * 9 7 6 11 11 O 1.33501 * 108.34174 * 180.02562 * 10 9 7 12 12 C 1.34887 * 109.88874 * 359.97438 * 11 10 9 13 13 C 1.46771 * 125.65469 * 179.97438 * 12 11 10 14 14 N 1.34772 * 119.99849 * 0.02562 * 13 12 11 15 15 O 1.21678 * 119.99792 * 179.75086 * 13 12 11 16 16 C 1.36064 * 108.69003 * 0.23940 * 12 11 10 17 17 C 1.53035 * 109.34065 * 185.45027 * 4 2 1 18 18 C 1.53044 * 109.54125 * 61.31930 * 17 4 2 19 19 C 1.53194 * 109.33695 * 298.68432 * 18 17 4 20 20 N 1.46926 * 108.77503 * 54.61488 * 19 18 17 21 21 C 1.36941 * 120.63064 * 126.41478 * 20 19 18 22 22 H 1.07995 * 120.00230 * 208.63035 * 21 20 19 23 23 C 1.38811 * 119.99838 * 28.63034 * 21 20 19 24 24 N 1.31622 * 120.00221 * 14.71825 * 23 21 20 25 25 Si 1.86800 * 120.00034 * 194.71834 * 23 21 20 26 26 H 1.48504 * 109.47344 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47272 * 119.99907 * 25 23 21 28 28 H 1.48497 * 109.47272 * 240.00021 * 25 23 21 29 29 H 1.09004 * 109.46850 * 180.28051 * 1 2 3 30 30 H 1.08994 * 109.47516 * 300.28154 * 1 2 3 31 31 H 1.09000 * 109.46928 * 60.28367 * 1 2 3 32 32 H 0.96999 * 120.00408 * 24.93783 * 6 4 2 33 33 H 1.07993 * 125.83132 * 359.97438 * 10 9 7 34 34 H 0.96996 * 119.99664 * 179.72201 * 14 13 12 35 35 H 0.96994 * 120.00221 * 359.72514 * 14 13 12 36 36 H 1.07994 * 126.68970 * 179.71576 * 16 12 11 37 37 H 1.08998 * 109.46582 * 181.36873 * 17 4 2 38 38 H 1.09003 * 109.46646 * 301.33453 * 17 4 2 39 39 H 1.08997 * 109.50190 * 178.71732 * 18 17 4 40 40 H 1.08993 * 109.49592 * 58.64472 * 18 17 4 41 41 H 1.09003 * 109.58497 * 294.83130 * 19 18 17 42 42 H 1.09005 * 109.70565 * 174.47190 * 19 18 17 43 43 H 0.96998 * 119.99926 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.6045 -1.7244 -1.2925 6 7 1.6676 0.0281 -2.4436 7 6 1.5455 -0.6030 -3.6282 8 8 1.7470 -1.7999 -3.7030 9 6 1.1675 0.1580 -4.8337 10 6 0.9088 1.5095 -4.9087 11 8 0.6018 1.8089 -6.1729 12 6 0.6510 0.6958 -6.9331 13 6 0.3743 0.6302 -8.3730 14 7 0.0375 1.7482 -9.0461 15 8 0.4539 -0.4327 -8.9600 16 6 0.9939 -0.3572 -6.1426 17 6 3.5678 -0.8440 -1.1733 18 6 3.9604 -1.6608 0.0600 19 6 3.4685 -0.9436 1.3211 20 7 2.0254 -0.6991 1.1936 21 6 1.1585 -1.1144 2.1689 22 1 0.1392 -1.3649 1.9145 23 6 1.5898 -1.2134 3.4846 24 7 2.7188 -0.6449 3.8516 25 14 0.5680 -2.1533 4.7343 26 1 -0.6471 -2.6944 4.0739 27 1 1.3704 -3.2736 5.2878 28 1 0.1685 -1.2397 5.8347 29 1 -0.3633 -1.0277 0.0050 30 1 -0.3634 0.5182 0.8874 31 1 -0.3633 0.5094 -0.8925 32 1 1.5066 0.9828 -2.3838 33 1 0.9469 2.2071 -4.0852 34 1 -0.1414 1.7056 -9.9985 35 1 -0.0259 2.5954 -8.5782 36 1 1.1120 -1.3850 -6.4524 37 1 3.9377 -1.3400 -2.0706 38 1 4.0050 0.1520 -1.1027 39 1 5.0449 -1.7625 0.0989 40 1 3.5042 -2.6490 0.0022 41 1 3.9920 0.0064 1.4288 42 1 3.6577 -1.5663 2.1955 43 1 3.0204 -0.7144 4.7709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993624544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:24 Heat of formation + Delta-G solvation = -68.134568 kcal Electronic energy + Delta-G solvation = -26994.116823 eV Core-core repulsion = 23040.246172 eV Total energy + Delta-G solvation = -3953.870652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.90931 -40.96745 -40.32075 -39.14924 -35.92657 -35.01239 -34.42661 -34.04750 -33.38883 -31.55961 -30.47349 -27.89933 -26.87915 -25.17325 -24.83612 -23.27361 -22.31826 -22.05780 -21.24958 -20.78387 -19.76871 -18.26955 -18.14287 -17.60026 -17.49460 -17.21344 -17.12138 -16.64293 -15.97879 -15.63035 -15.56296 -15.52472 -15.34600 -14.93520 -14.78747 -14.48648 -14.31085 -14.24143 -13.74393 -13.33126 -13.22561 -12.82766 -12.69885 -12.48710 -12.34654 -11.98699 -11.81001 -11.76586 -11.73812 -11.62381 -11.24379 -11.21799 -11.03641 -10.88084 -10.51480 -10.09133 -9.83815 -8.63996 -7.83799 -5.29201 -0.13392 0.45506 1.44288 1.46266 1.50056 1.58420 1.93277 2.01024 2.30113 2.49261 2.56837 3.31957 3.38150 3.65324 3.67357 3.87456 3.95059 4.06001 4.22934 4.29154 4.38533 4.40245 4.56014 4.64916 4.73819 4.80566 4.90640 4.94027 4.96063 5.06500 5.15252 5.23742 5.30903 5.45279 5.48161 5.50900 5.62946 5.72744 5.74538 5.80430 6.26689 6.43895 6.57851 7.09260 7.18115 7.23927 7.89275 8.39325 9.22901 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029598 B = 0.002533 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.773103 B =11052.903357 C =11318.495799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.166 3.834 3 H 0.043 0.957 4 C 0.147 3.853 5 H 0.055 0.945 6 N -0.696 5.696 7 C 0.585 3.415 8 O -0.586 6.586 9 C -0.263 4.263 10 C 0.097 3.903 11 O -0.136 6.136 12 C -0.093 4.093 13 C 0.610 3.390 14 N -0.816 5.816 15 O -0.567 6.567 16 C -0.083 4.083 17 C -0.110 4.110 18 C -0.131 4.131 19 C 0.174 3.826 20 N -0.601 5.601 21 C -0.249 4.249 22 H 0.072 0.928 23 C -0.050 4.050 24 N -0.933 5.933 25 Si 0.958 3.042 26 H -0.269 1.269 27 H -0.295 1.295 28 H -0.291 1.291 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.415 0.585 33 H 0.275 0.725 34 H 0.420 0.580 35 H 0.422 0.578 36 H 0.148 0.852 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.040 0.960 41 H 0.007 0.993 42 H 0.056 0.944 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.262 12.738 -21.447 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.059 3.941 3 H 0.060 0.940 4 C 0.040 3.960 5 H 0.073 0.927 6 N -0.347 5.347 7 C 0.374 3.626 8 O -0.467 6.467 9 C -0.268 4.268 10 C 0.023 3.977 11 O -0.029 6.029 12 C -0.144 4.144 13 C 0.395 3.605 14 N -0.380 5.380 15 O -0.448 6.448 16 C -0.105 4.105 17 C -0.148 4.148 18 C -0.171 4.171 19 C 0.049 3.951 20 N -0.325 5.325 21 C -0.379 4.379 22 H 0.090 0.910 23 C -0.245 4.245 24 N -0.580 5.580 25 Si 0.788 3.212 26 H -0.194 1.194 27 H -0.222 1.222 28 H -0.219 1.219 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.253 0.747 33 H 0.290 0.710 34 H 0.254 0.746 35 H 0.254 0.746 36 H 0.166 0.834 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.025 0.975 42 H 0.074 0.926 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.082 11.480 -21.704 24.890 hybrid contribution -0.225 -0.415 1.130 1.224 sum -4.306 11.065 -20.574 23.754 Atomic orbital electron populations 1.21761 0.94387 1.01000 1.01613 1.20731 0.94283 0.93751 0.85318 0.93964 1.21343 0.94854 0.95614 0.84164 0.92681 1.45635 1.69597 1.12771 1.06727 1.17562 0.76092 0.86194 0.82768 1.90795 1.52804 1.16904 1.86175 1.20546 1.16251 0.95681 0.94314 1.26006 0.91611 0.94944 0.85132 1.83942 1.66592 1.33557 1.18776 1.21589 1.15062 0.84997 0.92761 1.16521 0.76290 0.84625 0.83080 1.43475 1.70274 1.10068 1.14224 1.90941 1.54879 1.30957 1.67987 1.21879 0.96804 1.00311 0.91494 1.21691 0.95363 1.00592 0.97200 1.22030 1.00259 0.98722 0.96051 1.20665 0.83158 0.96316 0.94976 1.44287 1.03110 1.65969 1.19147 1.19475 0.94985 1.36654 0.86770 0.90991 1.25716 0.98974 1.01140 0.98682 1.70152 1.24395 1.46552 1.16855 0.85335 0.78543 0.78032 0.79324 1.19370 1.22225 1.21853 0.94519 0.93080 0.90085 0.74733 0.70967 0.74607 0.74586 0.83403 0.92971 0.90951 0.91057 0.94084 0.97476 0.92583 0.94278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.84 71.98 0.56 -3.74 16 2 C 0.17 6.04 3.03 44.97 0.14 6.18 16 3 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 4 C 0.15 4.88 1.99 45.07 0.09 4.97 16 5 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 6 N -0.70 -16.67 4.56 -445.37 -2.03 -18.70 16 7 C 0.59 16.38 7.78 86.68 0.67 17.05 16 8 O -0.59 -22.76 16.60 -4.05 -0.07 -22.83 16 9 C -0.26 -5.39 6.16 -20.08 -0.12 -5.52 16 10 C 0.10 0.95 11.64 67.72 0.79 1.73 16 11 O -0.14 -1.51 10.33 -0.83 -0.01 -1.52 16 12 C -0.09 -1.65 7.09 24.00 0.17 -1.48 16 13 C 0.61 10.98 8.06 86.47 0.70 11.68 16 14 N -0.82 -6.16 8.87 -176.33 -1.56 -7.72 16 15 O -0.57 -15.39 17.68 -4.28 -0.08 -15.47 16 16 C -0.08 -1.95 10.41 22.63 0.24 -1.71 16 17 C -0.11 -3.67 5.46 30.62 0.17 -3.50 16 18 C -0.13 -5.05 6.08 30.67 0.19 -4.87 16 19 C 0.17 8.17 5.29 86.36 0.46 8.63 16 20 N -0.60 -28.46 2.99 -675.22 -2.02 -30.48 16 21 C -0.25 -13.02 8.63 84.03 0.73 -12.29 16 22 H 0.07 3.69 6.20 -2.91 -0.02 3.67 16 23 C -0.05 -2.72 4.97 84.86 0.42 -2.29 16 24 N -0.93 -53.58 11.09 21.65 0.24 -53.34 16 25 Si 0.96 44.36 29.58 68.60 2.03 46.39 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 28 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 29 H 0.04 1.34 7.42 -2.38 -0.02 1.32 16 30 H 0.05 1.82 7.66 -2.39 -0.02 1.80 16 31 H 0.08 1.95 7.78 -2.39 -0.02 1.93 16 32 H 0.42 6.12 7.55 -92.71 -0.70 5.42 16 33 H 0.27 -0.39 7.46 -2.91 -0.02 -0.41 16 34 H 0.42 1.87 8.93 -92.71 -0.83 1.05 16 35 H 0.42 0.78 8.57 -92.71 -0.79 -0.02 16 36 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.06 3.02 6.01 -2.38 -0.01 3.01 16 43 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -79.44 357.83 0.45 -78.99 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -1.24 Total: 9.84 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 5.19 Total: 14.83 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -5.38 Total: -110.23 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.15 Total: -39.81 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -79.44 0.45 -78.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993624544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.853 kcal (2) G-P(sol) polarization free energy of solvation -79.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds