Wall clock time and date at job start Fri Apr 10 2020 18:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.58612 * 2 1 4 4 C 1.53194 * 109.58487 * 239.56088 * 2 1 3 5 5 C 1.53037 * 109.31014 * 185.56690 * 4 2 1 6 6 H 1.09005 * 109.45984 * 301.36577 * 5 4 2 7 7 N 1.46502 * 109.45771 * 181.40142 * 5 4 2 8 8 C 1.36939 * 120.00003 * 154.97355 * 7 5 4 9 9 H 1.07999 * 119.99820 * 359.71917 * 8 7 5 10 10 C 1.38811 * 120.00092 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99747 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00202 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46793 * 60.00245 * 12 10 8 14 14 H 1.48504 * 109.47012 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47182 * 300.00527 * 12 10 8 16 16 C 1.53043 * 109.53151 * 61.38515 * 5 4 2 17 17 C 1.53194 * 109.30862 * 298.62809 * 16 5 4 18 18 N 1.46926 * 108.77806 * 54.63516 * 17 16 5 19 19 C 1.34769 * 120.63372 * 126.36746 * 18 17 16 20 20 O 1.21618 * 120.00135 * 174.38722 * 19 18 17 21 21 C 1.47293 * 119.99874 * 354.38105 * 19 18 17 22 22 C 1.36571 * 125.80455 * 186.86722 * 21 19 18 23 23 C 1.40069 * 106.92500 * 179.91069 * 22 21 19 24 24 C 1.36572 * 106.92446 * 0.35640 * 23 22 21 25 25 C 1.47283 * 125.80336 * 179.78152 * 24 23 22 26 26 N 1.34779 * 119.99951 * 179.97438 * 25 24 23 27 27 O 1.21611 * 120.00427 * 359.97203 * 25 24 23 28 28 O 1.34543 * 125.80646 * 7.18467 * 21 19 18 29 29 H 1.08997 * 109.47166 * 306.85796 * 1 2 3 30 30 H 1.09005 * 109.46805 * 66.85755 * 1 2 3 31 31 H 1.08997 * 109.47123 * 186.85675 * 1 2 3 32 32 H 1.08999 * 109.48928 * 65.61989 * 4 2 1 33 33 H 1.09002 * 109.50980 * 305.52469 * 4 2 1 34 34 H 0.97004 * 119.99905 * 334.96193 * 7 5 4 35 35 H 0.97006 * 119.99979 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.49691 * 58.57625 * 16 5 4 37 37 H 1.08992 * 109.49663 * 178.67544 * 16 5 4 38 38 H 1.09003 * 109.58350 * 174.42002 * 17 16 5 39 39 H 1.08998 * 109.58551 * 294.70611 * 17 16 5 40 40 H 1.07997 * 126.54027 * 0.02562 * 22 21 19 41 41 H 1.07996 * 126.53535 * 180.10256 * 23 22 21 42 42 H 0.96998 * 120.00235 * 359.97438 * 26 25 24 43 43 H 0.96998 * 119.99888 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7312 -1.2444 5 6 3.5675 -0.8494 -1.1690 6 1 4.0060 0.1461 -1.0994 7 7 4.0652 -1.5187 -2.3735 8 6 5.3495 -1.3015 -2.7963 9 1 5.9940 -0.6335 -2.2443 10 6 5.8212 -1.9360 -3.9372 11 7 5.0340 -2.7459 -4.6130 12 14 7.5729 -1.6393 -4.5143 13 1 8.5218 -2.0592 -3.4520 14 1 7.8283 -2.4276 -5.7467 15 1 7.7609 -0.1949 -4.8033 16 6 3.9570 -1.6657 0.0656 17 6 3.4651 -0.9453 1.3249 18 7 2.0226 -0.6981 1.1954 19 6 1.1674 -1.1042 2.1545 20 8 -0.0095 -0.8051 2.0864 21 6 1.6580 -1.9106 3.2853 22 6 0.8827 -2.4939 4.2465 23 6 1.7502 -3.1614 5.1204 24 6 3.0185 -2.9504 4.6599 25 6 4.2546 -3.4648 5.2736 26 7 5.4501 -3.1842 4.7180 27 8 4.1968 -4.1426 6.2816 28 8 2.9465 -2.1928 3.5503 29 1 -0.3633 0.6164 0.8222 30 1 -0.3633 0.4039 -0.9450 31 1 -0.3633 -1.0203 0.1227 32 1 1.7659 -0.1699 -2.1365 33 1 1.6031 -1.7273 -1.2890 34 1 3.4851 -2.1157 -2.8714 35 1 5.3635 -3.1890 -5.4105 36 1 3.4983 -2.6529 0.0086 37 1 5.0412 -1.7695 0.1059 38 1 3.6518 -1.5691 2.1991 39 1 3.9921 0.0026 1.4330 40 1 -0.1940 -2.4504 4.3180 41 1 1.4698 -3.7307 5.9943 42 1 5.4963 -2.6438 3.9138 43 1 6.2642 -3.5226 5.1224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044676644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:34 Heat of formation + Delta-G solvation = -20.306532 kcal Electronic energy + Delta-G solvation = -27622.038399 eV Core-core repulsion = 23670.241727 eV Total energy + Delta-G solvation = -3951.796672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.18119 -40.39036 -39.48492 -37.60760 -34.73518 -34.25336 -33.44416 -32.90021 -32.03832 -30.31422 -29.30757 -27.16391 -25.17590 -24.25097 -23.11149 -22.80257 -21.54194 -21.00252 -20.40046 -19.67066 -18.57017 -17.42461 -17.20226 -17.10946 -16.90956 -16.14964 -15.33175 -15.07042 -14.90304 -14.64806 -14.44452 -14.18174 -13.87575 -13.66307 -13.49109 -13.45411 -13.18707 -12.99808 -12.76530 -12.23201 -12.04905 -11.70209 -11.36656 -10.96386 -10.90910 -10.89874 -10.85906 -10.49998 -10.40723 -10.34121 -10.18326 -9.98631 -9.79739 -9.43447 -9.10170 -8.97531 -8.60127 -7.05735 -5.84258 -3.14109 0.35890 1.63781 2.00806 2.77637 2.78610 2.96985 3.14414 3.37522 3.42324 3.43823 4.13646 4.47850 4.50395 4.58427 4.91472 5.03382 5.12849 5.18611 5.21761 5.27504 5.39857 5.46916 5.49730 5.60455 5.74054 5.88898 5.89791 5.91890 6.05274 6.13156 6.18392 6.25915 6.33945 6.35633 6.39684 6.46054 6.60815 6.78025 6.88312 6.94425 7.26142 7.60695 7.70460 7.90723 8.33645 9.44973 10.01671 10.36310 11.38047 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012159 B = 0.003738 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.183813 B = 7488.987638 C = 9411.543602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.147 3.853 3 H 0.077 0.923 4 C -0.136 4.136 5 C 0.178 3.822 6 H 0.049 0.951 7 N -0.723 5.723 8 C -0.243 4.243 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.150 4.150 17 C 0.090 3.910 18 N -0.588 5.588 19 C 0.595 3.405 20 O -0.512 6.512 21 C -0.029 4.029 22 C -0.139 4.139 23 C -0.125 4.125 24 C -0.067 4.067 25 C 0.610 3.390 26 N -0.840 5.840 27 O -0.521 6.521 28 O -0.143 6.143 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.410 0.590 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.144 3.093 17.746 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.045 3.955 3 H 0.095 0.905 4 C -0.175 4.175 5 C 0.068 3.932 6 H 0.067 0.933 7 N -0.363 5.363 8 C -0.375 4.375 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.191 4.191 17 C -0.032 4.032 18 N -0.320 5.320 19 C 0.382 3.618 20 O -0.391 6.391 21 C -0.083 4.083 22 C -0.160 4.160 23 C -0.146 4.146 24 C -0.120 4.120 25 C 0.394 3.606 26 N -0.403 5.403 27 O -0.398 6.398 28 O -0.040 6.040 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.186 0.814 41 H 0.185 0.815 42 H 0.239 0.761 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.521 3.003 18.059 19.122 hybrid contribution 1.266 -0.156 -0.743 1.476 sum -4.256 2.847 17.317 18.058 Atomic orbital electron populations 1.22216 0.92693 1.03711 1.01124 1.21423 0.95588 0.95312 0.83188 0.90488 1.22318 0.97682 1.01065 0.96399 1.20174 0.90853 0.95042 0.87155 0.93329 1.42414 1.12964 1.54260 1.26685 1.19173 0.89163 1.22275 1.06842 0.91207 1.24748 0.98142 0.99715 0.98098 1.69652 1.35471 1.33274 1.19518 0.86289 0.84520 0.77505 0.77964 1.21268 1.21680 1.21233 1.22694 1.01852 1.00066 0.94507 1.22466 0.78903 1.01244 1.00605 1.48183 1.07956 1.56058 1.19774 1.16923 0.85563 0.79090 0.80269 1.90920 1.15997 1.56534 1.75636 1.22819 0.81061 1.04373 1.00058 1.21950 1.01694 0.98676 0.93672 1.21962 0.90362 1.00917 1.01333 1.22485 0.96492 1.02145 0.90923 1.16640 0.81763 0.79258 0.82938 1.43710 1.08093 1.56339 1.32146 1.90917 1.86090 1.38682 1.24148 1.84309 1.28006 1.54568 1.37110 0.90735 0.93100 0.91576 0.90234 0.91632 0.78217 0.93377 0.92126 0.90409 0.88345 0.90897 0.81388 0.81536 0.76079 0.75648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 7.61 37.16 0.28 -1.54 16 2 C 0.15 1.95 3.49 -67.59 -0.24 1.72 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.14 -2.10 4.84 -26.61 -0.13 -2.23 16 5 C 0.18 3.19 2.73 -67.89 -0.19 3.00 16 6 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 7 N -0.72 -16.97 5.12 -53.38 -0.27 -17.24 16 8 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 11 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 12 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 C -0.15 -2.32 5.66 -26.61 -0.15 -2.47 16 17 C 0.09 1.09 6.33 -3.71 -0.02 1.07 16 18 N -0.59 -7.70 2.97 -166.52 -0.49 -8.19 16 19 C 0.59 8.04 7.49 -12.58 -0.09 7.95 16 20 O -0.51 -7.69 12.43 5.26 0.07 -7.62 16 21 C -0.03 -0.35 6.87 -36.50 -0.25 -0.60 16 22 C -0.14 -1.48 10.60 -39.50 -0.42 -1.90 16 23 C -0.13 -1.27 10.60 -39.50 -0.42 -1.69 16 24 C -0.07 -0.72 7.14 -36.51 -0.26 -0.98 16 25 C 0.61 6.43 8.08 -12.58 -0.10 6.33 16 26 N -0.84 -5.95 8.87 30.40 0.27 -5.68 16 27 O -0.52 -7.05 17.70 5.27 0.09 -6.95 16 28 O -0.14 -1.55 6.81 4.37 0.03 -1.52 16 29 H 0.07 1.00 6.64 -51.93 -0.34 0.65 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.95 6.85 -51.93 -0.36 0.59 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.38 9.78 7.80 -40.82 -0.32 9.46 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.10 1.08 3.74 -55.44 -0.21 0.87 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 42 H 0.41 2.32 8.59 -40.82 -0.35 1.97 16 43 H 0.41 2.21 8.93 -40.82 -0.36 1.85 16 LS Contribution 354.57 15.07 5.34 5.34 Total: -1.00 -31.84 354.57 -7.21 -39.05 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.71 Total: 11.13 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.23 Total: 1.74 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.23 Total: -57.63 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.19 Total: -16.10 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.84 -7.21 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044676644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.739 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds