Wall clock time and date at job start Fri Apr 10 2020 18:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.58612 * 2 1 4 4 C 1.53194 * 109.58487 * 239.56088 * 2 1 3 5 5 C 1.53037 * 109.31014 * 185.56690 * 4 2 1 6 6 H 1.09005 * 109.45984 * 301.36577 * 5 4 2 7 7 N 1.46502 * 109.45771 * 181.40142 * 5 4 2 8 8 C 1.36939 * 120.00003 * 154.97355 * 7 5 4 9 9 H 1.07999 * 119.99820 * 359.71917 * 8 7 5 10 10 C 1.38811 * 120.00092 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99747 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00202 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46793 * 60.00245 * 12 10 8 14 14 H 1.48504 * 109.47012 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47182 * 300.00527 * 12 10 8 16 16 C 1.53043 * 109.53151 * 61.38515 * 5 4 2 17 17 C 1.53194 * 109.30862 * 298.62809 * 16 5 4 18 18 N 1.46926 * 108.77806 * 54.63516 * 17 16 5 19 19 C 1.34769 * 120.63372 * 126.36746 * 18 17 16 20 20 O 1.21618 * 120.00135 * 174.38722 * 19 18 17 21 21 C 1.47293 * 119.99874 * 354.38105 * 19 18 17 22 22 C 1.36571 * 125.80455 * 186.86722 * 21 19 18 23 23 C 1.40069 * 106.92500 * 179.91069 * 22 21 19 24 24 C 1.36572 * 106.92446 * 0.35640 * 23 22 21 25 25 C 1.47283 * 125.80336 * 179.78152 * 24 23 22 26 26 N 1.34779 * 119.99951 * 179.97438 * 25 24 23 27 27 O 1.21611 * 120.00427 * 359.97203 * 25 24 23 28 28 O 1.34543 * 125.80646 * 7.18467 * 21 19 18 29 29 H 1.08997 * 109.47166 * 306.85796 * 1 2 3 30 30 H 1.09005 * 109.46805 * 66.85755 * 1 2 3 31 31 H 1.08997 * 109.47123 * 186.85675 * 1 2 3 32 32 H 1.08999 * 109.48928 * 65.61989 * 4 2 1 33 33 H 1.09002 * 109.50980 * 305.52469 * 4 2 1 34 34 H 0.97004 * 119.99905 * 334.96193 * 7 5 4 35 35 H 0.97006 * 119.99979 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.49691 * 58.57625 * 16 5 4 37 37 H 1.08992 * 109.49663 * 178.67544 * 16 5 4 38 38 H 1.09003 * 109.58350 * 174.42002 * 17 16 5 39 39 H 1.08998 * 109.58551 * 294.70611 * 17 16 5 40 40 H 1.07997 * 126.54027 * 0.02562 * 22 21 19 41 41 H 1.07996 * 126.53535 * 180.10256 * 23 22 21 42 42 H 0.96998 * 120.00235 * 359.97438 * 26 25 24 43 43 H 0.96998 * 119.99888 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7312 -1.2444 5 6 3.5675 -0.8494 -1.1690 6 1 4.0060 0.1461 -1.0994 7 7 4.0652 -1.5187 -2.3735 8 6 5.3495 -1.3015 -2.7963 9 1 5.9940 -0.6335 -2.2443 10 6 5.8212 -1.9360 -3.9372 11 7 5.0340 -2.7459 -4.6130 12 14 7.5729 -1.6393 -4.5143 13 1 8.5218 -2.0592 -3.4520 14 1 7.8283 -2.4276 -5.7467 15 1 7.7609 -0.1949 -4.8033 16 6 3.9570 -1.6657 0.0656 17 6 3.4651 -0.9453 1.3249 18 7 2.0226 -0.6981 1.1954 19 6 1.1674 -1.1042 2.1545 20 8 -0.0095 -0.8051 2.0864 21 6 1.6580 -1.9106 3.2853 22 6 0.8827 -2.4939 4.2465 23 6 1.7502 -3.1614 5.1204 24 6 3.0185 -2.9504 4.6599 25 6 4.2546 -3.4648 5.2736 26 7 5.4501 -3.1842 4.7180 27 8 4.1968 -4.1426 6.2816 28 8 2.9465 -2.1928 3.5503 29 1 -0.3633 0.6164 0.8222 30 1 -0.3633 0.4039 -0.9450 31 1 -0.3633 -1.0203 0.1227 32 1 1.7659 -0.1699 -2.1365 33 1 1.6031 -1.7273 -1.2890 34 1 3.4851 -2.1157 -2.8714 35 1 5.3635 -3.1890 -5.4105 36 1 3.4983 -2.6529 0.0086 37 1 5.0412 -1.7695 0.1059 38 1 3.6518 -1.5691 2.1991 39 1 3.9921 0.0026 1.4330 40 1 -0.1940 -2.4504 4.3180 41 1 1.4698 -3.7307 5.9943 42 1 5.4963 -2.6438 3.9138 43 1 6.2642 -3.5226 5.1224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044676644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:33 Heat of formation + Delta-G solvation = -43.721917 kcal Electronic energy + Delta-G solvation = -27623.053766 eV Core-core repulsion = 23670.241727 eV Total energy + Delta-G solvation = -3952.812040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.03638 -41.46520 -40.33514 -38.85060 -36.27949 -35.03219 -34.41847 -33.92629 -33.70532 -31.38269 -30.78420 -28.42087 -26.26370 -25.74064 -24.47289 -23.79274 -22.51178 -21.98087 -21.52573 -20.83411 -19.42239 -19.10041 -18.29669 -17.94728 -17.80875 -17.23512 -16.74067 -16.33023 -15.98453 -15.61877 -15.50262 -15.41191 -15.37675 -14.90515 -14.79679 -14.35527 -14.23242 -14.10732 -14.03478 -13.42080 -13.28567 -13.08429 -12.80651 -12.64368 -12.51030 -12.21411 -12.04040 -11.91766 -11.77044 -11.66363 -11.39794 -11.25055 -10.90835 -10.85044 -10.53639 -10.00731 -9.66433 -8.99279 -7.91274 -5.20016 -0.52267 0.78092 1.10625 1.50148 1.52186 1.58198 1.79158 1.96100 2.00247 2.38312 2.58538 3.21863 3.42334 3.66699 3.72337 3.78554 3.89938 4.02066 4.06702 4.19927 4.31625 4.36740 4.37759 4.54059 4.63679 4.69729 4.71509 4.82339 4.97169 4.98669 5.07455 5.09883 5.15775 5.24325 5.39906 5.44867 5.49491 5.55428 5.64936 5.71739 6.17556 6.23966 6.30065 6.86843 7.01976 7.36453 8.12114 8.34778 9.32147 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012159 B = 0.003738 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.183813 B = 7488.987638 C = 9411.543602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.152 3.848 3 H 0.095 0.905 4 C -0.125 4.125 5 C 0.172 3.828 6 H 0.053 0.947 7 N -0.737 5.737 8 C -0.235 4.235 9 H 0.081 0.919 10 C -0.076 4.076 11 N -0.972 5.972 12 Si 0.969 3.031 13 H -0.276 1.276 14 H -0.302 1.302 15 H -0.278 1.278 16 C -0.138 4.138 17 C 0.099 3.901 18 N -0.591 5.591 19 C 0.595 3.405 20 O -0.531 6.531 21 C -0.050 4.050 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.069 4.069 25 C 0.610 3.390 26 N -0.820 5.820 27 O -0.555 6.555 28 O -0.141 6.141 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.370 0.630 35 H 0.249 0.751 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.182 0.818 41 H 0.182 0.818 42 H 0.419 0.581 43 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 4.185 19.398 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.050 3.950 3 H 0.113 0.887 4 C -0.164 4.164 5 C 0.064 3.936 6 H 0.071 0.929 7 N -0.376 5.376 8 C -0.367 4.367 9 H 0.099 0.901 10 C -0.268 4.268 11 N -0.623 5.623 12 Si 0.798 3.202 13 H -0.202 1.202 14 H -0.228 1.228 15 H -0.204 1.204 16 C -0.179 4.179 17 C -0.023 4.023 18 N -0.322 5.322 19 C 0.383 3.617 20 O -0.411 6.411 21 C -0.103 4.103 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.122 4.122 25 C 0.394 3.606 26 N -0.384 5.384 27 O -0.435 6.435 28 O -0.038 6.038 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.201 0.799 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.113 0.887 40 H 0.199 0.801 41 H 0.200 0.800 42 H 0.250 0.750 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.798 4.144 19.748 20.740 hybrid contribution 1.015 -0.481 -1.183 1.631 sum -3.783 3.663 18.565 19.297 Atomic orbital electron populations 1.22096 0.92323 1.02675 1.01683 1.21383 0.95781 0.95724 0.82157 0.88709 1.22174 0.95899 1.00613 0.97705 1.20436 0.92264 0.94892 0.86043 0.92911 1.42648 1.12157 1.54444 1.28391 1.19605 0.90148 1.20825 1.06136 0.90095 1.25520 1.01845 1.00487 0.98934 1.69819 1.37220 1.35184 1.20077 0.85277 0.80442 0.77363 0.77078 1.20183 1.22835 1.20434 1.22450 1.01389 0.99065 0.94993 1.22448 0.78464 1.02184 0.99163 1.48213 1.08268 1.56073 1.19684 1.17045 0.85318 0.78840 0.80518 1.90911 1.16676 1.57213 1.76265 1.22612 0.81692 1.05603 1.00405 1.22180 1.02401 0.97501 0.92880 1.22207 0.90083 1.00736 1.01669 1.22637 0.96977 1.01859 0.90694 1.16646 0.82388 0.79001 0.82605 1.43606 1.07565 1.55286 1.31922 1.90906 1.86538 1.40403 1.25664 1.84218 1.27554 1.54738 1.37269 0.90858 0.91940 0.93247 0.90598 0.93065 0.79876 0.94245 0.93891 0.90929 0.86795 0.88736 0.80110 0.80040 0.74980 0.74457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 7.61 71.98 0.55 -2.68 16 2 C 0.15 3.78 3.49 44.98 0.16 3.94 16 3 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.12 -3.79 4.84 30.67 0.15 -3.64 16 5 C 0.17 6.00 2.73 45.02 0.12 6.13 16 6 H 0.05 1.82 8.08 -2.38 -0.02 1.80 16 7 N -0.74 -34.75 5.12 -322.80 -1.65 -36.40 16 8 C -0.24 -12.21 9.93 84.03 0.83 -11.37 16 9 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 10 C -0.08 -4.17 5.50 84.86 0.47 -3.70 16 11 N -0.97 -58.07 13.06 21.65 0.28 -57.78 16 12 Si 0.97 44.18 29.55 68.60 2.03 46.20 16 13 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 14 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 16 C -0.14 -4.11 5.66 30.67 0.17 -3.94 16 17 C 0.10 2.17 6.33 86.36 0.55 2.72 16 18 N -0.59 -14.40 2.97 -799.01 -2.37 -16.77 16 19 C 0.60 15.16 7.49 86.63 0.65 15.80 16 20 O -0.53 -15.29 12.43 -4.09 -0.05 -15.34 16 21 C -0.05 -1.10 6.87 24.26 0.17 -0.93 16 22 C -0.13 -2.49 10.60 22.32 0.24 -2.26 16 23 C -0.13 -2.33 10.60 22.32 0.24 -2.09 16 24 C -0.07 -1.34 7.14 24.26 0.17 -1.16 16 25 C 0.61 11.77 8.08 86.62 0.70 12.47 16 26 N -0.82 -9.80 8.87 -175.99 -1.56 -11.37 16 27 O -0.56 -14.32 17.70 -4.07 -0.07 -14.39 16 28 O -0.14 -2.75 6.81 -7.29 -0.05 -2.80 16 29 H 0.07 1.86 6.64 -2.39 -0.02 1.84 16 30 H 0.06 1.37 8.14 -2.38 -0.02 1.36 16 31 H 0.05 1.39 6.85 -2.39 -0.02 1.37 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.37 19.30 7.80 -92.71 -0.72 18.58 16 35 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.12 2.20 3.74 -58.05 -0.22 1.99 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 41 H 0.18 2.73 8.06 -2.91 -0.02 2.70 16 42 H 0.42 3.64 8.59 -92.71 -0.80 2.85 16 43 H 0.42 3.62 8.93 -92.71 -0.83 2.79 16 Total: -1.00 -68.51 354.57 0.24 -68.27 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -1.47 Total: 31.10 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.16 Total: 9.28 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -5.31 Total: -122.32 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.17 Total: -32.53 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -68.51 0.24 -68.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044676644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.547 kcal (2) G-P(sol) polarization free energy of solvation -68.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds