Wall clock time and date at job start Fri Apr 10 2020 18:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.70038 * 2 1 4 4 C 1.53625 * 109.66411 * 120.59297 * 2 1 3 5 5 C 1.53033 * 109.24124 * 174.55318 * 4 2 1 6 6 H 1.09004 * 109.45207 * 58.52277 * 5 4 2 7 7 N 1.46507 * 109.46080 * 178.48890 * 5 4 2 8 8 C 1.36942 * 120.00094 * 205.06463 * 7 5 4 9 9 H 1.08001 * 119.99735 * 0.02562 * 8 7 5 10 10 C 1.38808 * 119.99818 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99676 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00287 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.46871 * 90.00156 * 12 10 8 14 14 H 1.48497 * 109.47405 * 210.00431 * 12 10 8 15 15 H 1.48506 * 109.47017 * 330.00487 * 12 10 8 16 16 C 1.53045 * 109.54119 * 298.50831 * 5 4 2 17 17 C 1.53200 * 109.30690 * 61.36350 * 16 5 4 18 18 N 1.46917 * 108.77846 * 305.36787 * 17 16 5 19 19 C 1.34772 * 120.63154 * 233.58677 * 18 17 16 20 20 O 1.21621 * 120.00304 * 173.68958 * 19 18 17 21 21 C 1.47290 * 120.00284 * 353.69288 * 19 18 17 22 22 C 1.36565 * 125.80976 * 171.90247 * 21 19 18 23 23 C 1.40061 * 106.92634 * 179.97438 * 22 21 19 24 24 C 1.36571 * 106.93068 * 0.02562 * 23 22 21 25 25 C 1.47289 * 125.81126 * 179.97438 * 24 23 22 26 26 N 1.34775 * 119.99757 * 179.97438 * 25 24 23 27 27 O 1.21607 * 119.99713 * 0.02562 * 25 24 23 28 28 O 1.34552 * 125.79824 * 351.59045 * 21 19 18 29 29 H 1.09007 * 109.46786 * 174.17608 * 1 2 3 30 30 H 1.08998 * 109.47204 * 294.17628 * 1 2 3 31 31 H 1.08999 * 109.47145 * 54.18070 * 1 2 3 32 32 H 1.08993 * 109.63435 * 54.55599 * 4 2 1 33 33 H 1.09007 * 109.45689 * 294.43642 * 4 2 1 34 34 H 0.96993 * 119.99620 * 25.06750 * 7 5 4 35 35 H 0.96997 * 119.99530 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.49740 * 301.41820 * 16 5 4 37 37 H 1.08993 * 109.49824 * 181.31405 * 16 5 4 38 38 H 1.08996 * 109.58027 * 185.57813 * 17 16 5 39 39 H 1.09002 * 109.58567 * 65.16080 * 17 16 5 40 40 H 1.07996 * 126.53654 * 359.97438 * 22 21 19 41 41 H 1.07999 * 126.54013 * 180.02562 * 23 22 21 42 42 H 0.96998 * 120.00546 * 359.97438 * 26 25 24 43 43 H 0.97006 * 119.99713 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0470 -0.7363 1.2453 5 6 3.5711 -0.8497 1.1677 6 1 4.0063 0.1474 1.0990 7 7 4.0726 -1.5193 2.3704 8 6 5.3566 -1.2983 2.7921 9 1 5.9994 -0.6300 2.2383 10 6 5.8319 -1.9331 3.9313 11 7 7.0658 -1.7203 4.3370 12 14 4.7199 -3.0884 4.8896 13 1 4.8665 -4.4683 4.3610 14 1 5.1006 -3.0649 6.3247 15 1 3.3083 -2.6503 4.7447 16 6 3.9616 -1.6627 -0.0688 17 6 3.4657 -0.9418 -1.3264 18 7 2.0226 -0.6995 -1.1945 19 6 1.1676 -1.1061 -2.1536 20 8 -0.0321 -1.0036 -1.9821 21 6 1.6859 -1.6747 -3.4095 22 6 0.9378 -2.2634 -4.3888 23 6 1.8254 -2.6598 -5.3972 24 6 3.0775 -2.2968 -4.9902 25 6 4.3255 -2.5183 -5.7404 26 7 5.5024 -2.1099 -5.2260 27 8 4.2939 -3.0687 -6.8243 28 8 2.9764 -1.6973 -3.7897 29 1 -0.3633 -1.0224 -0.1043 30 1 -0.3633 0.4209 0.9375 31 1 -0.3633 0.6014 -0.8333 32 1 1.6096 -1.7336 1.2890 33 1 1.7687 -0.1776 2.1390 34 1 3.4952 -2.1191 2.8679 35 1 7.3980 -2.1642 5.1328 36 1 3.5062 -2.6514 -0.0128 37 1 5.0461 -1.7628 -0.1107 38 1 3.6533 -1.5636 -2.2017 39 1 3.9878 0.0091 -1.4323 40 1 -0.1337 -2.3976 -4.3862 41 1 1.5687 -3.1577 -6.3205 42 1 5.5276 -1.6699 -4.3619 43 1 6.3244 -2.2555 -5.7202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044676646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:37 Heat of formation + Delta-G solvation = -18.279488 kcal Electronic energy + Delta-G solvation = -27598.290341 eV Core-core repulsion = 23646.581568 eV Total energy + Delta-G solvation = -3951.708773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.21915 -40.46449 -39.52563 -37.69503 -34.88624 -34.29367 -33.45953 -32.97476 -32.06949 -30.44005 -29.76990 -27.32773 -25.22834 -24.28478 -23.05244 -22.66508 -21.59388 -21.01015 -20.39629 -19.84979 -18.60701 -17.73468 -17.37255 -17.14347 -17.00874 -16.14234 -15.32696 -15.23533 -14.92861 -14.65769 -14.56334 -14.20000 -14.00697 -13.77875 -13.51947 -13.39203 -13.17842 -13.11846 -12.64210 -12.45430 -12.22610 -11.98125 -11.54371 -11.10690 -11.01608 -10.99622 -10.92579 -10.62365 -10.41860 -10.35867 -10.21650 -10.02072 -9.67845 -9.48284 -9.14920 -9.01078 -8.66504 -7.37227 -5.85460 -3.21803 0.30964 1.58867 1.98110 2.72349 2.74365 2.90221 3.10960 3.31847 3.35197 3.40488 4.09417 4.44510 4.51871 4.53873 4.84991 4.86054 5.03386 5.11396 5.14499 5.20454 5.31683 5.41807 5.44557 5.49122 5.64887 5.76759 5.81417 5.84885 5.90307 5.99343 6.07505 6.18619 6.19415 6.24922 6.30411 6.38391 6.54508 6.67822 6.82459 6.84799 7.19524 7.66955 7.84725 7.89296 8.33522 9.11376 9.84272 10.03616 11.32600 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013420 B = 0.003634 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.950442 B = 7702.912640 C = 9221.629995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.148 3.852 3 H 0.079 0.921 4 C -0.139 4.139 5 C 0.183 3.817 6 H 0.058 0.942 7 N -0.747 5.747 8 C -0.247 4.247 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.150 4.150 17 C 0.095 3.905 18 N -0.590 5.590 19 C 0.596 3.404 20 O -0.511 6.511 21 C -0.030 4.030 22 C -0.139 4.139 23 C -0.126 4.126 24 C -0.065 4.065 25 C 0.610 3.390 26 N -0.839 5.839 27 O -0.520 6.520 28 O -0.145 6.145 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.410 0.590 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.709 1.991 -17.970 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.045 3.955 3 H 0.097 0.903 4 C -0.178 4.178 5 C 0.073 3.927 6 H 0.076 0.924 7 N -0.389 5.389 8 C -0.377 4.377 9 H 0.108 0.892 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.191 4.191 17 C -0.027 4.027 18 N -0.321 5.321 19 C 0.382 3.618 20 O -0.390 6.390 21 C -0.084 4.084 22 C -0.160 4.160 23 C -0.146 4.146 24 C -0.118 4.118 25 C 0.394 3.606 26 N -0.403 5.403 27 O -0.398 6.398 28 O -0.041 6.041 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.186 0.814 41 H 0.185 0.815 42 H 0.239 0.761 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -10.010 1.909 -18.283 20.931 hybrid contribution -0.204 -0.868 0.959 1.309 sum -10.214 1.042 -17.324 20.138 Atomic orbital electron populations 1.22244 0.92566 1.04142 1.00753 1.21504 0.95639 0.95211 0.83119 0.90278 1.22431 0.97550 1.01063 0.96792 1.20149 0.90711 0.95432 0.86404 0.92430 1.42785 1.13248 1.54685 1.28201 1.19049 0.87527 1.23348 1.07731 0.89153 1.24666 0.96075 1.00016 0.98152 1.69696 1.15059 1.46888 1.26322 0.86573 0.80504 0.81606 0.79959 1.21104 1.21699 1.20297 1.22662 1.02293 0.99804 0.94387 1.22321 0.78753 1.01375 1.00263 1.48168 1.08036 1.56102 1.19833 1.16919 0.85849 0.78260 0.80739 1.90933 1.14261 1.55800 1.77975 1.22787 0.81023 1.06319 0.98291 1.21957 1.01711 0.99951 0.92339 1.21970 0.90359 1.01235 1.01064 1.22437 0.96625 1.05299 0.87429 1.16630 0.81722 0.78142 0.84108 1.43711 1.08774 1.62470 1.25316 1.90920 1.85869 1.42920 1.20054 1.84312 1.27976 1.61374 1.30487 0.90569 0.93245 0.91504 0.91672 0.90235 0.80596 0.92987 0.92204 0.89856 0.88733 0.90772 0.81384 0.81497 0.76058 0.75611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 7.61 37.16 0.28 -1.43 16 2 C 0.15 1.84 3.51 -67.37 -0.24 1.61 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -2.01 4.86 -26.39 -0.13 -2.14 16 5 C 0.18 3.12 2.73 -67.89 -0.19 2.94 16 6 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 7 N -0.75 -16.44 4.92 -53.38 -0.26 -16.71 16 8 C -0.25 -6.54 10.41 -15.06 -0.16 -6.70 16 9 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 10 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -28.28 13.97 55.49 0.78 -27.50 16 12 Si 0.88 21.43 27.74 -169.99 -4.71 16.72 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 15 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 16 C -0.15 -2.24 5.66 -26.60 -0.15 -2.39 16 17 C 0.10 1.11 6.12 -3.71 -0.02 1.08 16 18 N -0.59 -7.33 2.97 -166.28 -0.49 -7.82 16 19 C 0.60 7.69 7.59 -12.58 -0.10 7.59 16 20 O -0.51 -7.39 12.28 5.26 0.06 -7.33 16 21 C -0.03 -0.35 6.77 -36.51 -0.25 -0.59 16 22 C -0.14 -1.41 10.61 -39.50 -0.42 -1.83 16 23 C -0.13 -1.22 10.60 -39.50 -0.42 -1.64 16 24 C -0.06 -0.66 7.14 -36.51 -0.26 -0.92 16 25 C 0.61 6.14 8.08 -12.58 -0.10 6.04 16 26 N -0.84 -5.55 8.87 30.40 0.27 -5.28 16 27 O -0.52 -6.83 17.70 5.27 0.09 -6.73 16 28 O -0.14 -1.49 6.99 4.31 0.03 -1.46 16 29 H 0.08 1.05 6.54 -51.92 -0.34 0.71 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.85 6.94 -51.93 -0.36 0.48 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.36 7.98 5.66 -40.82 -0.23 7.75 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.10 1.00 4.21 -53.16 -0.22 0.78 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.41 2.10 8.59 -40.82 -0.35 1.74 16 43 H 0.41 2.04 8.93 -40.82 -0.36 1.68 16 LS Contribution 351.78 15.07 5.30 5.30 Total: -1.00 -32.76 351.78 -6.86 -39.62 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.69 Total: 9.46 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.24 Total: 1.72 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.29 Total: -57.31 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.19 Total: -15.51 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.76 -6.86 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044676646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.339 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds