Wall clock time and date at job start Fri Apr 10 2020 18:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.70038 * 2 1 4 4 C 1.53625 * 109.66411 * 120.59297 * 2 1 3 5 5 C 1.53033 * 109.24124 * 174.55318 * 4 2 1 6 6 H 1.09004 * 109.45207 * 58.52277 * 5 4 2 7 7 N 1.46507 * 109.46080 * 178.48890 * 5 4 2 8 8 C 1.36942 * 120.00094 * 205.06463 * 7 5 4 9 9 H 1.08001 * 119.99735 * 0.02562 * 8 7 5 10 10 C 1.38808 * 119.99818 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99676 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00287 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.46871 * 90.00156 * 12 10 8 14 14 H 1.48497 * 109.47405 * 210.00431 * 12 10 8 15 15 H 1.48506 * 109.47017 * 330.00487 * 12 10 8 16 16 C 1.53045 * 109.54119 * 298.50831 * 5 4 2 17 17 C 1.53200 * 109.30690 * 61.36350 * 16 5 4 18 18 N 1.46917 * 108.77846 * 305.36787 * 17 16 5 19 19 C 1.34772 * 120.63154 * 233.58677 * 18 17 16 20 20 O 1.21621 * 120.00304 * 173.68958 * 19 18 17 21 21 C 1.47290 * 120.00284 * 353.69288 * 19 18 17 22 22 C 1.36565 * 125.80976 * 171.90247 * 21 19 18 23 23 C 1.40061 * 106.92634 * 179.97438 * 22 21 19 24 24 C 1.36571 * 106.93068 * 0.02562 * 23 22 21 25 25 C 1.47289 * 125.81126 * 179.97438 * 24 23 22 26 26 N 1.34775 * 119.99757 * 179.97438 * 25 24 23 27 27 O 1.21607 * 119.99713 * 0.02562 * 25 24 23 28 28 O 1.34552 * 125.79824 * 351.59045 * 21 19 18 29 29 H 1.09007 * 109.46786 * 174.17608 * 1 2 3 30 30 H 1.08998 * 109.47204 * 294.17628 * 1 2 3 31 31 H 1.08999 * 109.47145 * 54.18070 * 1 2 3 32 32 H 1.08993 * 109.63435 * 54.55599 * 4 2 1 33 33 H 1.09007 * 109.45689 * 294.43642 * 4 2 1 34 34 H 0.96993 * 119.99620 * 25.06750 * 7 5 4 35 35 H 0.96997 * 119.99530 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.49740 * 301.41820 * 16 5 4 37 37 H 1.08993 * 109.49824 * 181.31405 * 16 5 4 38 38 H 1.08996 * 109.58027 * 185.57813 * 17 16 5 39 39 H 1.09002 * 109.58567 * 65.16080 * 17 16 5 40 40 H 1.07996 * 126.53654 * 359.97438 * 22 21 19 41 41 H 1.07999 * 126.54013 * 180.02562 * 23 22 21 42 42 H 0.96998 * 120.00546 * 359.97438 * 26 25 24 43 43 H 0.97006 * 119.99713 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0470 -0.7363 1.2453 5 6 3.5711 -0.8497 1.1677 6 1 4.0063 0.1474 1.0990 7 7 4.0726 -1.5193 2.3704 8 6 5.3566 -1.2983 2.7921 9 1 5.9994 -0.6300 2.2383 10 6 5.8319 -1.9331 3.9313 11 7 7.0658 -1.7203 4.3370 12 14 4.7199 -3.0884 4.8896 13 1 4.8665 -4.4683 4.3610 14 1 5.1006 -3.0649 6.3247 15 1 3.3083 -2.6503 4.7447 16 6 3.9616 -1.6627 -0.0688 17 6 3.4657 -0.9418 -1.3264 18 7 2.0226 -0.6995 -1.1945 19 6 1.1676 -1.1061 -2.1536 20 8 -0.0321 -1.0036 -1.9821 21 6 1.6859 -1.6747 -3.4095 22 6 0.9378 -2.2634 -4.3888 23 6 1.8254 -2.6598 -5.3972 24 6 3.0775 -2.2968 -4.9902 25 6 4.3255 -2.5183 -5.7404 26 7 5.5024 -2.1099 -5.2260 27 8 4.2939 -3.0687 -6.8243 28 8 2.9764 -1.6973 -3.7897 29 1 -0.3633 -1.0224 -0.1043 30 1 -0.3633 0.4209 0.9375 31 1 -0.3633 0.6014 -0.8333 32 1 1.6096 -1.7336 1.2890 33 1 1.7687 -0.1776 2.1390 34 1 3.4952 -2.1191 2.8679 35 1 7.3980 -2.1642 5.1328 36 1 3.5062 -2.6514 -0.0128 37 1 5.0461 -1.7628 -0.1107 38 1 3.6533 -1.5636 -2.2017 39 1 3.9878 0.0091 -1.4323 40 1 -0.1337 -2.3976 -4.3862 41 1 1.5687 -3.1577 -6.3205 42 1 5.5276 -1.6699 -4.3619 43 1 6.3244 -2.2555 -5.7202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044676646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:36 Heat of formation + Delta-G solvation = -42.770105 kcal Electronic energy + Delta-G solvation = -27599.352334 eV Core-core repulsion = 23646.581568 eV Total energy + Delta-G solvation = -3952.770766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.02673 -41.48336 -40.33807 -38.89693 -36.39605 -35.02984 -34.38883 -33.95472 -33.79847 -31.71977 -30.98008 -28.49445 -26.24648 -25.63002 -24.34416 -23.74867 -22.50982 -21.98032 -21.54994 -20.93546 -19.65450 -19.32485 -18.27060 -17.95228 -17.84592 -17.17230 -16.74625 -16.33419 -16.06214 -15.88407 -15.55357 -15.43985 -15.13577 -14.89558 -14.71945 -14.36310 -14.26934 -14.21993 -14.04033 -13.74694 -13.40087 -13.16118 -12.98081 -12.65700 -12.61326 -12.10438 -12.05005 -11.96453 -11.78622 -11.76178 -11.40028 -11.23206 -10.91790 -10.90539 -10.49686 -10.00329 -9.67351 -9.30242 -8.00542 -5.33296 -0.52589 0.77614 1.12868 1.39295 1.40547 1.48107 1.78927 1.95610 1.99049 2.38878 2.49509 3.22371 3.31468 3.48144 3.67437 3.77520 3.87960 3.98489 4.02910 4.19192 4.30238 4.34317 4.37190 4.51338 4.56243 4.64428 4.71068 4.80849 4.92127 4.96736 5.04346 5.08159 5.13602 5.22073 5.37324 5.45161 5.45953 5.64192 5.71147 5.80137 6.17444 6.22756 6.23890 6.86601 7.02025 7.09799 7.86513 8.04116 9.20714 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013420 B = 0.003634 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.950442 B = 7702.912640 C = 9221.629995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.151 3.849 3 H 0.094 0.906 4 C -0.129 4.129 5 C 0.175 3.825 6 H 0.054 0.946 7 N -0.752 5.752 8 C -0.223 4.223 9 H 0.064 0.936 10 C -0.062 4.062 11 N -0.983 5.983 12 Si 0.947 3.053 13 H -0.283 1.283 14 H -0.299 1.299 15 H -0.253 1.253 16 C -0.141 4.141 17 C 0.105 3.895 18 N -0.592 5.592 19 C 0.596 3.404 20 O -0.530 6.530 21 C -0.049 4.049 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.066 4.066 25 C 0.610 3.390 26 N -0.820 5.820 27 O -0.555 6.555 28 O -0.142 6.142 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.363 0.637 35 H 0.256 0.744 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.181 0.819 41 H 0.182 0.818 42 H 0.419 0.581 43 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 2.013 -19.055 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.112 0.888 4 C -0.168 4.168 5 C 0.067 3.933 6 H 0.072 0.928 7 N -0.395 5.395 8 C -0.354 4.354 9 H 0.082 0.918 10 C -0.253 4.253 11 N -0.634 5.634 12 Si 0.776 3.224 13 H -0.209 1.209 14 H -0.226 1.226 15 H -0.178 1.178 16 C -0.182 4.182 17 C -0.017 4.017 18 N -0.323 5.323 19 C 0.384 3.616 20 O -0.409 6.409 21 C -0.103 4.103 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.120 4.120 25 C 0.394 3.606 26 N -0.384 5.384 27 O -0.435 6.435 28 O -0.039 6.039 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.196 0.804 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.199 0.801 41 H 0.199 0.801 42 H 0.251 0.749 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -11.592 1.961 -19.394 22.680 hybrid contribution 0.306 -0.812 1.190 1.473 sum -11.286 1.149 -18.204 21.450 Atomic orbital electron populations 1.22114 0.92095 1.03166 1.01333 1.21503 0.95886 0.95594 0.82190 0.88770 1.22307 0.95163 1.01223 0.98127 1.20412 0.92525 0.94984 0.85341 0.92839 1.42843 1.11656 1.55130 1.29841 1.19038 0.88794 1.21064 1.06488 0.91790 1.25401 0.97483 1.02583 0.99835 1.69864 1.17298 1.49046 1.27190 0.85523 0.79823 0.79390 0.77712 1.20940 1.22641 1.17755 1.22448 1.01379 0.99382 0.94962 1.22266 0.78479 1.02119 0.98873 1.48186 1.08171 1.56089 1.19854 1.17023 0.85630 0.77855 0.81080 1.90929 1.14958 1.56517 1.78522 1.22596 0.81622 1.07760 0.98322 1.22178 1.02391 0.98672 0.91746 1.22208 0.90090 1.00979 1.01488 1.22567 0.97036 1.05059 0.87290 1.16647 0.82336 0.77984 0.83678 1.43614 1.08276 1.61002 1.25496 1.90908 1.86336 1.44782 1.21503 1.84242 1.27536 1.61504 1.30571 0.92128 0.91901 0.91810 0.92145 0.89972 0.80450 0.93504 0.92999 0.91276 0.87304 0.89033 0.80131 0.80093 0.74938 0.74473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 7.61 71.98 0.55 -2.36 16 2 C 0.15 3.42 3.51 45.12 0.16 3.57 16 3 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.13 -3.48 4.86 30.82 0.15 -3.33 16 5 C 0.18 5.75 2.73 45.02 0.12 5.87 16 6 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 7 N -0.75 -32.36 4.92 -322.80 -1.59 -33.95 16 8 C -0.22 -11.87 10.41 84.03 0.87 -11.00 16 9 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 10 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 11 N -0.98 -61.06 13.97 21.65 0.30 -60.76 16 12 Si 0.95 44.23 27.74 68.60 1.90 46.14 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 15 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 16 C -0.14 -4.02 5.66 30.68 0.17 -3.84 16 17 C 0.10 2.20 6.12 86.37 0.53 2.73 16 18 N -0.59 -13.40 2.97 -798.22 -2.37 -15.77 16 19 C 0.60 14.22 7.59 86.62 0.66 14.87 16 20 O -0.53 -14.42 12.28 -4.10 -0.05 -14.47 16 21 C -0.05 -1.02 6.77 24.26 0.16 -0.86 16 22 C -0.13 -2.35 10.61 22.32 0.24 -2.11 16 23 C -0.13 -2.21 10.60 22.32 0.24 -1.97 16 24 C -0.07 -1.22 7.14 24.26 0.17 -1.05 16 25 C 0.61 11.27 8.08 86.62 0.70 11.97 16 26 N -0.82 -9.21 8.87 -175.99 -1.56 -10.77 16 27 O -0.56 -13.94 17.70 -4.05 -0.07 -14.02 16 28 O -0.14 -2.59 6.99 -7.49 -0.05 -2.64 16 29 H 0.06 1.56 6.54 -2.38 -0.02 1.55 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.49 6.94 -2.39 -0.02 1.47 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.36 15.37 5.66 -92.71 -0.52 14.85 16 35 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.11 2.03 4.21 -21.79 -0.09 1.94 16 39 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 42 H 0.42 3.30 8.59 -92.71 -0.80 2.51 16 43 H 0.42 3.38 8.93 -92.70 -0.83 2.55 16 Total: -1.00 -70.86 351.78 0.50 -70.36 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -1.21 Total: 26.39 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.19 Total: 9.49 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -5.22 Total: -121.25 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.17 Total: -31.13 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.90 Total: 46.14 kcal Total: -70.86 0.50 -70.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044676646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.589 kcal (2) G-P(sol) polarization free energy of solvation -70.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds