Wall clock time and date at job start Fri Apr 10 2020 18:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.70285 * 2 1 4 4 C 1.53191 * 109.58860 * 239.64485 * 2 1 3 5 5 C 1.53040 * 109.31479 * 294.84862 * 4 2 1 6 6 H 1.08997 * 109.45565 * 58.63940 * 5 4 2 7 7 N 1.46494 * 109.46197 * 178.61567 * 5 4 2 8 8 C 1.36940 * 119.99968 * 205.00048 * 7 5 4 9 9 H 1.07997 * 119.99633 * 359.72504 * 8 7 5 10 10 C 1.38812 * 120.00057 * 179.71855 * 8 7 5 11 11 N 1.31619 * 120.00126 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00079 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46929 * 90.00339 * 12 10 8 14 14 H 1.48501 * 109.47246 * 210.00547 * 12 10 8 15 15 H 1.48501 * 109.46874 * 330.00492 * 12 10 8 16 16 C 1.53044 * 109.53481 * 298.63295 * 5 4 2 17 17 C 1.53194 * 109.31299 * 61.36875 * 16 5 4 18 18 N 1.46927 * 109.58596 * 120.35496 * 2 1 3 19 19 C 1.34771 * 120.62988 * 246.20163 * 18 2 1 20 20 O 1.21609 * 120.00496 * 352.66826 * 19 18 2 21 21 C 1.47291 * 120.00126 * 172.67146 * 19 18 2 22 22 C 1.36571 * 125.81342 * 172.45579 * 21 19 18 23 23 C 1.40055 * 106.93100 * 179.84886 * 22 21 19 24 24 C 1.36567 * 106.92733 * 0.40530 * 23 22 21 25 25 C 1.47293 * 125.80943 * 179.76681 * 24 23 22 26 26 N 1.34776 * 120.00173 * 180.02562 * 25 24 23 27 27 O 1.21615 * 119.99781 * 0.02562 * 25 24 23 28 28 O 1.34552 * 108.38636 * 359.74726 * 24 23 22 29 29 H 1.08996 * 109.46765 * 180.35333 * 1 2 3 30 30 H 1.08992 * 109.46888 * 300.35286 * 1 2 3 31 31 H 1.09000 * 109.46688 * 60.35581 * 1 2 3 32 32 H 1.08996 * 109.49845 * 174.89387 * 4 2 1 33 33 H 1.09001 * 109.52523 * 54.81725 * 4 2 1 34 34 H 0.96998 * 119.99972 * 24.71609 * 7 5 4 35 35 H 0.96999 * 120.00406 * 179.97438 * 11 10 8 36 36 H 1.08996 * 109.49436 * 181.31059 * 16 5 4 37 37 H 1.08994 * 109.50104 * 301.41177 * 16 5 4 38 38 H 1.08996 * 109.58604 * 185.57744 * 17 16 5 39 39 H 1.08994 * 109.70710 * 65.21574 * 17 16 5 40 40 H 1.08007 * 126.53294 * 359.96395 * 22 21 19 41 41 H 1.08001 * 126.53780 * 180.15573 * 23 22 21 42 42 H 0.97002 * 119.99638 * 0.02562 * 26 25 24 43 43 H 0.97001 * 119.99796 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 1.6416 -2.2041 -1.1702 6 1 0.5567 -2.2814 -1.0991 7 7 2.1025 -2.8977 -2.3754 8 6 1.4652 -4.0339 -2.7975 9 1 0.6255 -4.4210 -2.2394 10 6 1.8982 -4.6879 -3.9427 11 7 2.9218 -4.2163 -4.6226 12 14 1.0293 -6.2382 -4.5181 13 1 -0.0732 -5.8731 -5.4436 14 1 1.9976 -7.1157 -5.2235 15 1 0.4726 -6.9581 -3.3446 16 6 2.2802 -2.8464 0.0634 17 6 1.7692 -2.1411 1.3237 18 7 2.0226 -0.6995 1.1945 19 6 2.6936 -0.0316 2.1536 20 8 3.0133 1.1283 1.9766 21 6 3.0400 -0.7064 3.4162 22 6 3.8361 -0.1974 4.4021 23 6 3.8959 -1.1613 5.4164 24 6 3.1412 -2.2215 5.0025 25 6 2.9230 -3.4695 5.7536 26 7 2.1529 -4.4446 5.2314 27 8 3.4379 -3.6202 6.8451 28 8 2.6303 -1.9318 3.7919 29 1 -0.3633 -1.0276 0.0063 30 1 -0.3633 0.5193 0.8868 31 1 -0.3633 0.5083 -0.8932 32 1 3.1297 -0.6503 -1.2913 33 1 1.6081 -0.2786 -2.1371 34 1 2.8566 -2.5499 -2.8767 35 1 3.2247 -4.6735 -5.4227 36 1 2.0124 -3.9021 0.1036 37 1 3.3641 -2.7474 0.0053 38 1 2.2945 -2.5275 2.1971 39 1 0.6990 -2.3154 1.4342 40 1 4.3248 0.7658 4.4008 41 1 4.4390 -1.0829 6.3467 42 1 1.7426 -4.3245 4.3607 43 1 2.0096 -5.2666 5.7259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044676649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:42 Heat of formation + Delta-G solvation = -36.912883 kcal Electronic energy + Delta-G solvation = -27545.803951 eV Core-core repulsion = 23593.287173 eV Total energy + Delta-G solvation = -3952.516778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.19806 -40.24495 -39.50695 -37.80161 -34.74535 -34.28989 -33.46013 -32.65738 -31.92518 -30.35783 -29.38575 -27.40323 -25.31995 -24.13393 -23.19257 -22.73180 -21.67875 -21.05442 -20.66111 -19.14283 -18.40566 -17.65665 -17.23923 -17.08647 -16.97650 -16.20630 -15.27059 -15.04997 -14.95013 -14.65107 -14.22790 -14.13225 -13.86592 -13.64782 -13.55232 -13.43062 -13.30982 -13.04242 -12.78344 -12.61818 -11.91138 -11.61744 -11.37654 -11.00443 -10.96155 -10.94721 -10.83884 -10.57362 -10.43027 -10.26047 -10.24547 -10.21654 -9.81331 -9.70768 -9.16028 -8.97237 -8.66202 -7.04966 -5.83999 -3.13718 0.32726 1.61034 1.99899 2.75236 2.77032 2.93634 3.12417 3.37451 3.42349 3.44703 4.12661 4.46672 4.50844 4.56000 4.89923 5.04254 5.12337 5.15914 5.18840 5.25948 5.36094 5.44803 5.50065 5.58953 5.69630 5.76874 5.80793 5.87197 5.95940 6.09441 6.13172 6.18412 6.27032 6.34690 6.37965 6.43373 6.51945 6.78567 6.84516 6.95126 7.24600 7.61331 7.67190 7.86010 8.33965 9.45336 10.02374 10.36815 11.38409 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.003510 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.994778 B = 7976.123626 C = 9465.035278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.099 0.901 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.724 5.724 8 C -0.242 4.242 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 C -0.150 4.150 17 C 0.095 3.905 18 N -0.587 5.587 19 C 0.597 3.403 20 O -0.521 6.521 21 C -0.027 4.027 22 C -0.139 4.139 23 C -0.125 4.125 24 C -0.065 4.065 25 C 0.611 3.389 26 N -0.840 5.840 27 O -0.520 6.520 28 O -0.144 6.144 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.410 0.590 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 5.626 18.272 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.117 0.883 4 C -0.173 4.173 5 C 0.068 3.932 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.191 4.191 17 C -0.027 4.027 18 N -0.319 5.319 19 C 0.383 3.617 20 O -0.399 6.399 21 C -0.081 4.081 22 C -0.159 4.159 23 C -0.146 4.146 24 C -0.118 4.118 25 C 0.395 3.605 26 N -0.403 5.403 27 O -0.397 6.397 28 O -0.041 6.041 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.187 0.813 41 H 0.185 0.815 42 H 0.239 0.761 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.749 5.932 18.590 19.707 hybrid contribution -0.296 -1.157 -0.713 1.391 sum -3.046 4.775 17.877 18.753 Atomic orbital electron populations 1.22157 0.94566 1.03013 1.02188 1.21327 0.94227 0.97139 0.83409 0.88280 1.22232 1.01574 0.97256 0.96271 1.20200 0.96815 0.89081 0.87081 0.93011 1.42427 1.38174 1.29242 1.26528 1.19209 1.10527 1.01201 1.06394 0.91176 1.24748 0.98445 0.99450 0.98106 1.69658 1.27665 1.41368 1.19200 0.86220 0.78589 0.83010 0.78511 1.21690 1.21779 1.20770 1.22697 1.01350 1.00569 0.94523 1.22297 1.01465 0.78677 1.00282 1.48184 1.53687 1.10029 1.19953 1.16811 0.78606 0.85393 0.80866 1.90852 1.54312 1.15878 1.78825 1.22581 1.02877 0.84561 0.98059 1.21974 0.99967 1.01703 0.92253 1.21969 0.99781 0.91752 1.01052 1.22422 1.04059 0.98399 0.86961 1.16627 0.78623 0.81088 0.84210 1.43707 1.52153 1.19886 1.24561 1.90922 1.49963 1.79231 1.19630 1.84310 1.58912 1.30983 1.29864 0.91479 0.92771 0.90928 0.91643 0.90220 0.78237 0.93433 0.90411 0.92121 0.89010 0.91022 0.81329 0.81459 0.76079 0.75646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.02 37.16 0.34 -1.51 16 2 C 0.14 1.88 3.22 -67.60 -0.22 1.66 16 3 H 0.10 1.36 7.00 -51.92 -0.36 1.00 16 4 C -0.13 -2.08 5.02 -26.61 -0.13 -2.21 16 5 C 0.18 3.17 2.52 -67.89 -0.17 3.00 16 6 H 0.05 0.92 6.44 -51.93 -0.33 0.59 16 7 N -0.72 -16.95 5.12 -53.39 -0.27 -17.22 16 8 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 9 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 11 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 12 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C -0.15 -2.35 5.66 -26.61 -0.15 -2.50 16 17 C 0.10 1.16 5.69 -3.71 -0.02 1.14 16 18 N -0.59 -7.75 2.68 -166.53 -0.45 -8.19 16 19 C 0.60 8.32 7.67 -12.58 -0.10 8.22 16 20 O -0.52 -8.46 16.30 5.27 0.09 -8.37 16 21 C -0.03 -0.32 6.78 -36.50 -0.25 -0.57 16 22 C -0.14 -1.47 10.60 -39.50 -0.42 -1.89 16 23 C -0.13 -1.25 10.60 -39.50 -0.42 -1.67 16 24 C -0.07 -0.68 7.14 -36.51 -0.26 -0.94 16 25 C 0.61 6.20 8.08 -12.58 -0.10 6.10 16 26 N -0.84 -5.55 8.87 30.40 0.27 -5.28 16 27 O -0.52 -6.86 17.70 5.26 0.09 -6.76 16 28 O -0.14 -1.53 6.99 4.34 0.03 -1.50 16 29 H 0.07 0.79 5.72 -51.93 -0.30 0.49 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.38 9.78 7.80 -40.82 -0.32 9.46 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.02 4.24 -53.06 -0.22 0.79 16 39 H 0.07 0.78 7.49 -51.93 -0.39 0.39 16 40 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.41 2.09 8.59 -40.82 -0.35 1.74 16 43 H 0.41 2.01 8.93 -40.82 -0.36 1.65 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -32.39 356.32 -6.89 -39.28 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.57 Total: 10.79 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -2.15 Total: 1.95 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.27 Total: -57.22 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.21 Total: -16.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.39 -6.89 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044676649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.368 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds