Wall clock time and date at job start Fri Apr 10 2020 18:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.70285 * 2 1 4 4 C 1.53191 * 109.58860 * 239.64485 * 2 1 3 5 5 C 1.53040 * 109.31479 * 294.84862 * 4 2 1 6 6 H 1.08997 * 109.45565 * 58.63940 * 5 4 2 7 7 N 1.46494 * 109.46197 * 178.61567 * 5 4 2 8 8 C 1.36940 * 119.99968 * 205.00048 * 7 5 4 9 9 H 1.07997 * 119.99633 * 359.72504 * 8 7 5 10 10 C 1.38812 * 120.00057 * 179.71855 * 8 7 5 11 11 N 1.31619 * 120.00126 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00079 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46929 * 90.00339 * 12 10 8 14 14 H 1.48501 * 109.47246 * 210.00547 * 12 10 8 15 15 H 1.48501 * 109.46874 * 330.00492 * 12 10 8 16 16 C 1.53044 * 109.53481 * 298.63295 * 5 4 2 17 17 C 1.53194 * 109.31299 * 61.36875 * 16 5 4 18 18 N 1.46927 * 109.58596 * 120.35496 * 2 1 3 19 19 C 1.34771 * 120.62988 * 246.20163 * 18 2 1 20 20 O 1.21609 * 120.00496 * 352.66826 * 19 18 2 21 21 C 1.47291 * 120.00126 * 172.67146 * 19 18 2 22 22 C 1.36571 * 125.81342 * 172.45579 * 21 19 18 23 23 C 1.40055 * 106.93100 * 179.84886 * 22 21 19 24 24 C 1.36567 * 106.92733 * 0.40530 * 23 22 21 25 25 C 1.47293 * 125.80943 * 179.76681 * 24 23 22 26 26 N 1.34776 * 120.00173 * 180.02562 * 25 24 23 27 27 O 1.21615 * 119.99781 * 0.02562 * 25 24 23 28 28 O 1.34552 * 108.38636 * 359.74726 * 24 23 22 29 29 H 1.08996 * 109.46765 * 180.35333 * 1 2 3 30 30 H 1.08992 * 109.46888 * 300.35286 * 1 2 3 31 31 H 1.09000 * 109.46688 * 60.35581 * 1 2 3 32 32 H 1.08996 * 109.49845 * 174.89387 * 4 2 1 33 33 H 1.09001 * 109.52523 * 54.81725 * 4 2 1 34 34 H 0.96998 * 119.99972 * 24.71609 * 7 5 4 35 35 H 0.96999 * 120.00406 * 179.97438 * 11 10 8 36 36 H 1.08996 * 109.49436 * 181.31059 * 16 5 4 37 37 H 1.08994 * 109.50104 * 301.41177 * 16 5 4 38 38 H 1.08996 * 109.58604 * 185.57744 * 17 16 5 39 39 H 1.08994 * 109.70710 * 65.21574 * 17 16 5 40 40 H 1.08007 * 126.53294 * 359.96395 * 22 21 19 41 41 H 1.08001 * 126.53780 * 180.15573 * 23 22 21 42 42 H 0.97002 * 119.99638 * 0.02562 * 26 25 24 43 43 H 0.97001 * 119.99796 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 1.6416 -2.2041 -1.1702 6 1 0.5567 -2.2814 -1.0991 7 7 2.1025 -2.8977 -2.3754 8 6 1.4652 -4.0339 -2.7975 9 1 0.6255 -4.4210 -2.2394 10 6 1.8982 -4.6879 -3.9427 11 7 2.9218 -4.2163 -4.6226 12 14 1.0293 -6.2382 -4.5181 13 1 -0.0732 -5.8731 -5.4436 14 1 1.9976 -7.1157 -5.2235 15 1 0.4726 -6.9581 -3.3446 16 6 2.2802 -2.8464 0.0634 17 6 1.7692 -2.1411 1.3237 18 7 2.0226 -0.6995 1.1945 19 6 2.6936 -0.0316 2.1536 20 8 3.0133 1.1283 1.9766 21 6 3.0400 -0.7064 3.4162 22 6 3.8361 -0.1974 4.4021 23 6 3.8959 -1.1613 5.4164 24 6 3.1412 -2.2215 5.0025 25 6 2.9230 -3.4695 5.7536 26 7 2.1529 -4.4446 5.2314 27 8 3.4379 -3.6202 6.8451 28 8 2.6303 -1.9318 3.7919 29 1 -0.3633 -1.0276 0.0063 30 1 -0.3633 0.5193 0.8868 31 1 -0.3633 0.5083 -0.8932 32 1 3.1297 -0.6503 -1.2913 33 1 1.6081 -0.2786 -2.1371 34 1 2.8566 -2.5499 -2.8767 35 1 3.2247 -4.6735 -5.4227 36 1 2.0124 -3.9021 0.1036 37 1 3.3641 -2.7474 0.0053 38 1 2.2945 -2.5275 2.1971 39 1 0.6990 -2.3154 1.4342 40 1 4.3248 0.7658 4.4008 41 1 4.4390 -1.0829 6.3467 42 1 1.7426 -4.3245 4.3607 43 1 2.0096 -5.2666 5.7259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044676649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:41 Heat of formation + Delta-G solvation = -60.862373 kcal Electronic energy + Delta-G solvation = -27546.842479 eV Core-core repulsion = 23593.287173 eV Total energy + Delta-G solvation = -3953.555306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.04426 -41.34700 -40.33455 -39.03959 -36.32401 -35.03526 -34.39801 -33.86017 -33.44641 -31.40509 -30.83906 -28.63872 -26.36345 -25.69253 -24.48995 -23.71723 -22.78535 -22.10787 -21.57120 -20.23089 -19.40030 -19.00191 -18.54562 -17.96922 -17.84943 -17.35316 -16.71032 -16.29443 -15.84982 -15.66229 -15.51532 -15.33329 -15.21792 -14.95033 -14.71411 -14.42853 -14.25729 -14.18771 -13.98253 -13.85847 -13.12029 -12.94394 -12.84662 -12.65643 -12.46276 -12.16036 -12.08373 -11.93941 -11.83812 -11.69462 -11.37398 -11.24530 -11.11383 -10.90490 -10.84095 -10.08318 -9.71935 -8.98851 -7.91014 -5.19674 -0.54939 0.75548 1.09824 1.50351 1.51232 1.59302 1.77419 1.93387 1.97146 2.38072 2.58743 3.21191 3.42844 3.66225 3.72092 3.82025 3.88474 3.99083 4.06792 4.21209 4.26706 4.35620 4.41177 4.54237 4.54663 4.66063 4.72292 4.81238 4.89449 4.99314 5.04896 5.07017 5.08317 5.24436 5.31439 5.40220 5.51501 5.55651 5.60632 5.71243 6.15748 6.22048 6.30506 6.79294 7.02549 7.36738 8.12637 8.35064 9.32730 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.003510 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.994778 B = 7976.123626 C = 9465.035278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.146 3.854 3 H 0.095 0.905 4 C -0.125 4.125 5 C 0.174 3.826 6 H 0.060 0.940 7 N -0.738 5.738 8 C -0.233 4.233 9 H 0.082 0.918 10 C -0.077 4.077 11 N -0.973 5.973 12 Si 0.968 3.032 13 H -0.290 1.290 14 H -0.302 1.302 15 H -0.265 1.265 16 C -0.140 4.140 17 C 0.104 3.896 18 N -0.588 5.588 19 C 0.597 3.403 20 O -0.549 6.549 21 C -0.048 4.048 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.063 4.063 25 C 0.611 3.389 26 N -0.819 5.819 27 O -0.554 6.554 28 O -0.140 6.140 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.180 0.820 41 H 0.184 0.816 42 H 0.420 0.580 43 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 5.142 20.146 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.113 0.887 4 C -0.164 4.164 5 C 0.066 3.934 6 H 0.077 0.923 7 N -0.377 5.377 8 C -0.364 4.364 9 H 0.100 0.900 10 C -0.269 4.269 11 N -0.624 5.624 12 Si 0.798 3.202 13 H -0.217 1.217 14 H -0.229 1.229 15 H -0.189 1.189 16 C -0.181 4.181 17 C -0.017 4.017 18 N -0.319 5.319 19 C 0.385 3.615 20 O -0.430 6.430 21 C -0.101 4.101 22 C -0.149 4.149 23 C -0.147 4.147 24 C -0.117 4.117 25 C 0.394 3.606 26 N -0.383 5.383 27 O -0.434 6.434 28 O -0.036 6.036 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.200 0.800 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.198 0.802 41 H 0.201 0.799 42 H 0.251 0.749 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -4.346 5.429 20.498 21.645 hybrid contribution 0.181 -0.973 -1.219 1.570 sum -4.165 4.456 19.279 20.221 Atomic orbital electron populations 1.22109 0.92623 1.03298 1.03221 1.21254 0.95605 0.96466 0.82313 0.88658 1.22102 1.00542 0.96126 0.97659 1.20447 0.97182 0.89942 0.85833 0.92255 1.42674 1.37689 1.29123 1.28213 1.19642 1.09910 1.01230 1.05660 0.89986 1.25524 0.99659 1.02756 0.98968 1.69823 1.29800 1.42969 1.19784 0.85209 0.77128 0.79608 0.78248 1.21707 1.22905 1.18947 1.22474 0.99986 1.00466 0.95177 1.22277 1.02936 0.77715 0.98799 1.48225 1.53517 1.10337 1.19808 1.16975 0.77959 0.85156 0.81380 1.90833 1.55406 1.17137 1.79587 1.22282 1.04522 0.85417 0.97927 1.22200 0.98867 1.02091 0.91733 1.22207 0.99688 0.91332 1.01477 1.22600 1.03711 0.98683 0.86685 1.16615 0.78794 0.81395 0.83762 1.43596 1.50514 1.19405 1.24779 1.90913 1.51615 1.79844 1.21039 1.84233 1.58941 1.30438 1.30010 0.91454 0.91579 0.90140 0.93311 0.90508 0.79950 0.94275 0.90913 0.94040 0.87455 0.88644 0.80242 0.79910 0.74899 0.74415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.02 71.98 0.65 -2.52 16 2 C 0.15 3.70 3.22 44.98 0.14 3.85 16 3 H 0.10 2.54 7.00 -2.38 -0.02 2.53 16 4 C -0.13 -3.85 5.02 30.67 0.15 -3.70 16 5 C 0.17 6.05 2.52 45.02 0.11 6.17 16 6 H 0.06 2.00 6.44 -2.39 -0.02 1.98 16 7 N -0.74 -34.77 5.12 -322.82 -1.65 -36.42 16 8 C -0.23 -12.03 9.93 84.03 0.83 -11.20 16 9 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 10 C -0.08 -4.24 5.50 84.86 0.47 -3.78 16 11 N -0.97 -58.24 13.06 21.65 0.28 -57.95 16 12 Si 0.97 44.19 29.55 68.60 2.03 46.21 16 13 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 15 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 16 C -0.14 -4.22 5.66 30.67 0.17 -4.05 16 17 C 0.10 2.30 5.69 86.36 0.49 2.80 16 18 N -0.59 -14.57 2.68 -799.02 -2.14 -16.71 16 19 C 0.60 15.87 7.67 86.62 0.66 16.53 16 20 O -0.55 -17.45 16.30 -4.06 -0.07 -17.51 16 21 C -0.05 -1.07 6.78 24.26 0.16 -0.90 16 22 C -0.13 -2.50 10.60 22.32 0.24 -2.26 16 23 C -0.13 -2.27 10.60 22.32 0.24 -2.03 16 24 C -0.06 -1.18 7.14 24.26 0.17 -1.01 16 25 C 0.61 11.12 8.08 86.62 0.70 11.82 16 26 N -0.82 -8.68 8.87 -175.98 -1.56 -10.24 16 27 O -0.55 -13.76 17.70 -4.08 -0.07 -13.83 16 28 O -0.14 -2.63 6.99 -7.39 -0.05 -2.68 16 29 H 0.07 1.38 5.72 -2.39 -0.01 1.37 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.37 19.33 7.80 -92.71 -0.72 18.61 16 35 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.11 2.09 4.24 -20.23 -0.09 2.01 16 39 H 0.10 1.73 7.49 -2.39 -0.02 1.71 16 40 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 41 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.42 2.98 8.59 -92.71 -0.80 2.19 16 43 H 0.42 3.05 8.93 -92.71 -0.83 2.22 16 Total: -1.00 -70.07 356.32 0.63 -69.44 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -1.33 Total: 29.99 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.20 Total: 9.71 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -5.07 Total: -121.33 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.19 Total: -34.02 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.07 0.63 -69.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044676649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.578 kcal (2) G-P(sol) polarization free energy of solvation -70.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds