Wall clock time and date at job start Fri Apr 10 2020 18:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.70062 * 2 1 4 4 C 1.53189 * 109.58422 * 120.35451 * 2 1 3 5 5 C 1.53042 * 109.31067 * 174.42365 * 4 2 1 6 6 H 1.09008 * 109.44810 * 178.62081 * 5 4 2 7 7 N 1.46499 * 109.46005 * 58.65629 * 5 4 2 8 8 C 1.36937 * 120.00039 * 154.93578 * 7 5 4 9 9 H 1.07995 * 120.00365 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99778 * 179.97438 * 8 7 5 11 11 N 1.31626 * 119.99553 * 179.97438 * 10 8 7 12 12 Si 1.86792 * 120.00237 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47482 * 89.99705 * 12 10 8 14 14 H 1.48504 * 109.47266 * 209.99809 * 12 10 8 15 15 H 1.48503 * 109.47008 * 329.99746 * 12 10 8 16 16 C 1.53042 * 109.53951 * 298.63226 * 5 4 2 17 17 C 1.53188 * 109.30951 * 61.36256 * 16 5 4 18 18 N 1.46922 * 108.89823 * 305.29727 * 17 16 5 19 19 C 1.34773 * 120.63094 * 233.67549 * 18 17 16 20 20 O 1.21607 * 120.00006 * 186.59538 * 19 18 17 21 21 C 1.47491 * 120.00142 * 6.59538 * 19 18 17 22 22 C 1.37812 * 126.77165 * 27.25026 * 21 19 18 23 23 O 1.33499 * 108.34249 * 179.83009 * 22 21 19 24 24 C 1.34893 * 109.88689 * 0.44365 * 23 22 21 25 25 C 1.46761 * 125.65403 * 179.68946 * 24 23 22 26 26 N 1.34782 * 120.00380 * 0.03844 * 25 24 23 27 27 O 1.21680 * 120.00214 * 180.02562 * 25 24 23 28 28 C 1.36058 * 108.69009 * 359.72256 * 24 23 22 29 29 H 1.08997 * 109.47086 * 290.74924 * 1 2 3 30 30 H 1.08993 * 109.47013 * 50.75112 * 1 2 3 31 31 H 1.09003 * 109.46685 * 170.75018 * 1 2 3 32 32 H 1.08997 * 109.50588 * 54.47147 * 4 2 1 33 33 H 1.09001 * 109.50036 * 294.36768 * 4 2 1 34 34 H 0.97001 * 120.00194 * 334.92634 * 7 5 4 35 35 H 0.96998 * 119.99607 * 180.02562 * 11 10 8 36 36 H 1.08995 * 109.49457 * 301.41678 * 16 5 4 37 37 H 1.08999 * 109.52474 * 181.33004 * 16 5 4 38 38 H 1.09003 * 109.58972 * 65.15678 * 17 16 5 39 39 H 1.09000 * 109.58533 * 185.43520 * 17 16 5 40 40 H 1.08001 * 125.82533 * 359.97438 * 22 21 19 41 41 H 0.97008 * 119.99397 * 0.02562 * 26 25 24 42 42 H 0.96997 * 120.00055 * 179.97438 * 26 25 24 43 43 H 1.08001 * 126.68895 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5675 -0.8479 1.1702 6 1 3.9376 -1.3449 2.0670 7 7 4.1570 0.4898 1.0750 8 6 5.4409 0.7041 1.5003 9 1 6.0188 -0.1129 1.9062 10 6 5.9996 1.9716 1.4096 11 7 7.2336 2.1777 1.8188 12 14 5.0000 3.3850 0.7082 13 1 4.2605 4.0605 1.8046 14 1 5.9105 4.3579 0.0525 15 1 4.0341 2.8605 -0.2904 16 6 3.9570 -1.6657 -0.0634 17 6 3.4651 -0.9470 -1.3236 18 7 2.0223 -0.6998 -1.1979 19 6 1.1694 -1.1081 -2.1582 20 8 -0.0042 -0.7941 -2.1028 21 6 1.6592 -1.9359 -3.2763 22 6 2.7393 -2.7917 -3.2578 23 8 2.8495 -3.3551 -4.4631 24 6 1.8807 -2.8890 -5.2778 25 6 1.6848 -3.2729 -6.6807 26 7 2.5142 -4.1651 -7.2575 27 8 0.7734 -2.7859 -7.3232 28 6 1.1158 -2.0035 -4.5836 29 1 -0.3633 0.3641 0.9610 30 1 -0.3633 0.6502 -0.7958 31 1 -0.3633 -1.0143 -0.1652 32 1 1.6030 -1.7253 1.2915 33 1 1.7661 -0.1667 2.1368 34 1 3.6380 1.2238 0.7106 35 1 7.6239 3.0634 1.7558 36 1 3.4984 -2.6528 -0.0051 37 1 5.0412 -1.7700 -0.1039 38 1 3.9903 0.0020 -1.4317 39 1 3.6542 -1.5708 -2.1973 40 1 3.3847 -2.9768 -2.4119 41 1 3.2405 -4.5538 -6.7452 42 1 2.3844 -4.4191 -8.1846 43 1 0.2613 -1.4581 -4.9562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044685683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:44 Heat of formation + Delta-G solvation = -39.277946 kcal Electronic energy + Delta-G solvation = -27788.391224 eV Core-core repulsion = 23835.771889 eV Total energy + Delta-G solvation = -3952.619335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.02358 -41.51238 -40.34520 -38.92001 -36.01209 -35.24110 -34.66516 -33.82465 -33.46058 -31.46430 -30.95478 -28.60911 -25.97891 -25.23230 -25.12830 -24.28502 -22.83956 -22.04520 -21.11440 -20.07941 -19.76536 -19.01269 -18.06038 -18.01522 -17.64272 -17.15581 -16.93716 -16.69195 -16.24229 -15.61631 -15.58371 -15.49931 -15.16008 -15.02683 -14.65484 -14.54833 -14.32981 -14.31324 -13.97586 -13.60921 -13.34953 -13.04590 -12.96420 -12.64074 -12.53076 -12.11876 -12.00346 -11.93491 -11.74326 -11.68390 -11.44212 -11.22427 -10.95124 -10.89339 -10.35666 -9.89391 -9.59708 -9.24415 -7.98607 -5.29391 -0.20752 0.44581 1.36881 1.38097 1.38397 1.44838 1.77197 1.90001 2.14901 2.46419 2.48927 3.28788 3.34136 3.54374 3.62906 3.66704 3.84797 3.93177 4.01573 4.15058 4.24787 4.29549 4.31028 4.45939 4.60810 4.63625 4.69927 4.81001 4.89470 4.91339 5.02942 5.12827 5.23455 5.24464 5.30417 5.39693 5.43134 5.68294 5.72408 5.85355 6.23433 6.26054 6.38235 7.06408 7.07965 7.12863 7.90471 8.06813 9.23065 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.003520 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.237736 B = 7953.582814 C = 8562.372662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.143 3.857 3 H 0.053 0.947 4 C -0.125 4.125 5 C 0.169 3.831 6 H 0.057 0.943 7 N -0.749 5.749 8 C -0.212 4.212 9 H 0.067 0.933 10 C -0.059 4.059 11 N -0.983 5.983 12 Si 0.938 3.062 13 H -0.284 1.284 14 H -0.301 1.301 15 H -0.259 1.259 16 C -0.145 4.145 17 C 0.093 3.907 18 N -0.594 5.594 19 C 0.584 3.416 20 O -0.562 6.562 21 C -0.257 4.257 22 C 0.068 3.932 23 O -0.137 6.137 24 C -0.090 4.090 25 C 0.611 3.389 26 N -0.817 5.817 27 O -0.564 6.564 28 C -0.081 4.081 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.361 0.639 35 H 0.255 0.745 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.115 0.885 40 H 0.266 0.734 41 H 0.422 0.578 42 H 0.421 0.579 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.178 -16.433 -12.875 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.041 3.959 3 H 0.071 0.929 4 C -0.164 4.164 5 C 0.061 3.939 6 H 0.075 0.925 7 N -0.393 5.393 8 C -0.343 4.343 9 H 0.085 0.915 10 C -0.251 4.251 11 N -0.634 5.634 12 Si 0.767 3.233 13 H -0.211 1.211 14 H -0.229 1.229 15 H -0.185 1.185 16 C -0.185 4.185 17 C -0.028 4.028 18 N -0.327 5.327 19 C 0.374 3.626 20 O -0.442 6.442 21 C -0.261 4.261 22 C -0.004 4.004 23 O -0.030 6.030 24 C -0.142 4.142 25 C 0.396 3.604 26 N -0.381 5.381 27 O -0.445 6.445 28 C -0.103 4.103 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.194 0.806 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.281 0.719 41 H 0.254 0.746 42 H 0.255 0.745 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.980 -16.153 -13.136 23.088 hybrid contribution 0.091 1.522 -0.194 1.537 sum -9.888 -14.631 -13.329 22.125 Atomic orbital electron populations 1.22028 0.92353 1.03031 1.00815 1.21292 0.95511 0.94871 0.84246 0.92941 1.22201 0.95410 1.02112 0.96662 1.20449 0.91535 0.85144 0.96753 0.92512 1.42931 1.12779 1.07464 1.76133 1.19043 0.89449 0.94713 1.31098 0.91464 1.25288 0.97021 0.99742 1.03032 1.69847 1.15564 1.22272 1.55761 0.85675 0.78339 0.80551 0.78691 1.21057 1.22859 1.18459 1.22436 1.01910 0.99293 0.94891 1.22303 0.78531 1.01838 1.00175 1.48103 1.07837 1.56879 1.19837 1.17517 0.85052 0.79068 0.80995 1.90824 1.18244 1.58415 1.76742 1.20677 1.02164 1.07077 0.96191 1.26185 0.95854 0.91480 0.86887 1.83967 1.44435 1.54358 1.20194 1.21705 0.94667 1.04709 0.93091 1.16492 0.81821 0.79325 0.82788 1.43494 1.32936 1.43882 1.17769 1.90935 1.33995 1.56640 1.62940 1.21857 0.99626 0.97048 0.91745 0.92013 0.92885 0.91910 0.88919 0.90327 0.80577 0.93645 0.88794 0.90738 0.92718 0.86770 0.71918 0.74634 0.74540 0.82689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 7.63 71.98 0.55 -2.89 16 2 C 0.14 4.07 3.20 44.92 0.14 4.21 16 3 H 0.05 1.71 6.64 -2.39 -0.02 1.70 16 4 C -0.13 -3.22 5.06 30.67 0.16 -3.07 16 5 C 0.17 5.18 3.10 45.02 0.14 5.32 16 6 H 0.06 1.83 8.08 -2.38 -0.02 1.81 16 7 N -0.75 -30.63 4.11 -322.80 -1.33 -31.96 16 8 C -0.21 -10.91 10.41 84.03 0.87 -10.03 16 9 H 0.07 3.75 8.06 -2.91 -0.02 3.73 16 10 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 11 N -0.98 -60.49 13.97 21.65 0.30 -60.19 16 12 Si 0.94 44.37 27.74 68.60 1.90 46.28 16 13 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 14 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 15 H -0.26 -11.26 6.52 99.48 0.65 -10.61 16 16 C -0.15 -3.45 5.61 30.67 0.17 -3.28 16 17 C 0.09 2.23 5.55 86.36 0.48 2.71 16 18 N -0.59 -15.79 2.98 -798.15 -2.38 -18.17 16 19 C 0.58 16.38 7.43 86.68 0.64 17.02 16 20 O -0.56 -19.03 12.68 -4.05 -0.05 -19.09 16 21 C -0.26 -5.81 5.73 -20.08 -0.11 -5.93 16 22 C 0.07 1.01 9.89 67.72 0.67 1.68 16 23 O -0.14 -1.98 10.33 -0.88 -0.01 -1.99 16 24 C -0.09 -1.75 7.09 23.99 0.17 -1.58 16 25 C 0.61 11.66 8.06 86.47 0.70 12.36 16 26 N -0.82 -7.39 8.87 -176.33 -1.56 -8.95 16 27 O -0.56 -15.53 17.68 -4.29 -0.08 -15.60 16 28 C -0.08 -1.95 10.51 22.63 0.24 -1.71 16 29 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 30 H 0.05 1.66 6.80 -2.39 -0.02 1.64 16 31 H 0.06 1.78 6.71 -2.39 -0.02 1.76 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.36 14.91 3.92 -92.71 -0.36 14.54 16 35 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.05 1.69 7.74 -2.39 -0.02 1.67 16 39 H 0.11 1.94 3.20 -2.39 -0.01 1.94 16 40 H 0.27 2.10 5.94 -2.91 -0.02 2.08 16 41 H 0.42 1.63 8.57 -92.70 -0.79 0.83 16 42 H 0.42 2.40 8.93 -92.71 -0.83 1.57 16 43 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -75.48 345.51 1.13 -74.35 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.95 Total: 23.36 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 5.28 Total: 11.97 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -4.97 Total: -119.28 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -0.14 Total: -36.68 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.90 Total: 46.28 kcal Total: -75.48 1.13 -74.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.070 kcal (2) G-P(sol) polarization free energy of solvation -75.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds