Wall clock time and date at job start Fri Apr 10 2020 18:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58307 * 2 1 4 4 C 1.53161 * 109.59248 * 239.56005 * 2 1 3 5 5 C 1.53039 * 109.32791 * 185.56786 * 4 2 1 6 6 H 1.08999 * 109.45758 * 181.38680 * 5 4 2 7 7 N 1.46505 * 109.46218 * 301.36313 * 5 4 2 8 8 C 1.36930 * 119.99795 * 205.02800 * 7 5 4 9 9 H 1.07997 * 120.00404 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99736 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00397 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99890 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47215 * 59.99603 * 12 10 8 14 14 H 1.48506 * 109.47003 * 299.99384 * 12 10 8 15 15 H 1.48500 * 109.47218 * 179.97438 * 12 10 8 16 16 C 1.53039 * 109.52432 * 61.37626 * 5 4 2 17 17 C 1.53194 * 109.31199 * 298.63821 * 16 5 4 18 18 N 1.46924 * 109.58316 * 120.27687 * 2 1 3 19 19 C 1.34774 * 120.63592 * 353.37713 * 18 2 1 20 20 O 1.21601 * 119.99884 * 358.43659 * 19 18 2 21 21 C 1.47487 * 120.00372 * 178.43464 * 19 18 2 22 22 C 1.37809 * 126.77376 * 27.51138 * 21 19 18 23 23 O 1.33497 * 108.34274 * 179.97438 * 22 21 19 24 24 C 1.34874 * 109.88761 * 0.02562 * 23 22 21 25 25 C 1.46780 * 125.65493 * 180.02562 * 24 23 22 26 26 N 1.34779 * 119.99305 * 359.96780 * 25 24 23 27 27 O 1.21675 * 120.00206 * 179.97438 * 25 24 23 28 28 C 1.36062 * 108.69302 * 359.74347 * 24 23 22 29 29 H 1.08995 * 109.47620 * 306.23738 * 1 2 3 30 30 H 1.09000 * 109.47218 * 66.23988 * 1 2 3 31 31 H 1.08998 * 109.46963 * 186.23479 * 1 2 3 32 32 H 1.09009 * 109.47485 * 65.62331 * 4 2 1 33 33 H 1.08994 * 109.50294 * 305.53773 * 4 2 1 34 34 H 0.96998 * 119.99590 * 25.02113 * 7 5 4 35 35 H 0.97003 * 119.99372 * 0.02562 * 11 10 8 36 36 H 1.08992 * 109.50244 * 58.58884 * 16 5 4 37 37 H 1.09003 * 109.50054 * 178.66158 * 16 5 4 38 38 H 1.09003 * 109.58932 * 174.42309 * 17 16 5 39 39 H 1.09001 * 109.58882 * 294.70801 * 17 16 5 40 40 H 1.08001 * 125.82786 * 359.95886 * 22 21 19 41 41 H 0.96989 * 120.00613 * 0.02562 * 26 25 24 42 42 H 0.97003 * 119.99148 * 180.02562 * 26 25 24 43 43 H 1.08000 * 126.68853 * 180.26766 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2440 5 6 3.5675 -0.8494 -1.1689 6 1 3.9376 -1.3476 -2.0650 7 7 4.1570 0.4885 -1.0754 8 6 5.4410 0.7021 -1.5005 9 1 6.0193 -0.1157 -1.9043 10 6 5.9994 1.9699 -1.4124 11 7 5.2946 2.9668 -0.9208 12 14 7.7509 2.2615 -1.9930 13 1 7.8575 1.9219 -3.4346 14 1 8.6800 1.4054 -1.2126 15 1 8.1072 3.6893 -1.7936 16 6 3.9569 -1.6655 0.0657 17 6 3.4650 -0.9451 1.3250 18 7 2.0224 -0.6979 1.1954 19 6 1.1674 -1.1033 2.1551 20 8 -0.0209 -0.8673 2.0499 21 6 1.6727 -1.8332 3.3329 22 6 2.9325 -1.7392 3.8837 23 8 2.9927 -2.5575 4.9367 24 6 1.8111 -3.1881 5.0958 25 6 1.4966 -4.1635 6.1466 26 7 2.4316 -4.4966 7.0585 27 8 0.3920 -4.6715 6.1943 28 6 0.9570 -2.7655 4.1247 29 1 -0.3634 0.6074 0.8288 30 1 -0.3634 0.4141 -0.9406 31 1 -0.3633 -1.0216 0.1116 32 1 1.7658 -0.1695 -2.1361 33 1 1.6030 -1.7270 -1.2887 34 1 3.6377 1.2230 -0.7125 35 1 4.3849 2.8154 -0.6197 36 1 3.4983 -2.6527 0.0089 37 1 5.0412 -1.7698 0.1059 38 1 3.6517 -1.5687 2.1993 39 1 3.9920 0.0029 1.4331 40 1 3.7342 -1.1109 3.5246 41 1 3.3120 -4.0915 7.0206 42 1 2.2238 -5.1415 7.7527 43 1 -0.0663 -3.0806 3.9836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044685684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:47 Heat of formation + Delta-G solvation = -13.543349 kcal Electronic energy + Delta-G solvation = -27724.172948 eV Core-core repulsion = 23772.669549 eV Total energy + Delta-G solvation = -3951.503399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.14843 -40.32517 -39.50353 -37.56619 -34.58448 -34.34018 -33.76250 -32.44704 -32.12183 -30.08493 -28.93947 -27.18742 -24.75309 -24.33475 -23.54421 -23.16677 -21.71705 -21.13739 -19.99375 -19.18794 -18.09099 -17.44120 -17.25383 -16.99034 -16.76219 -15.94856 -15.84534 -15.36509 -14.82984 -14.63214 -14.55602 -14.13220 -13.87761 -13.64225 -13.47426 -13.38006 -13.29887 -12.82750 -12.75903 -12.15931 -11.99007 -11.65336 -11.36141 -10.91195 -10.85178 -10.79312 -10.61352 -10.40815 -10.32509 -10.24344 -10.19961 -10.02544 -9.24753 -9.13529 -9.04853 -8.91163 -8.33285 -7.13749 -6.17896 -3.19200 0.64000 1.44150 2.24093 2.74418 2.87184 3.19948 3.26631 3.45741 3.48664 3.66445 4.26930 4.33533 4.56906 4.59733 4.88008 5.08535 5.17155 5.22712 5.24467 5.34830 5.45373 5.47433 5.57634 5.59405 5.71380 5.83754 5.85202 5.91074 6.04053 6.16613 6.17353 6.25764 6.34284 6.36935 6.46203 6.59725 6.60383 6.68167 6.85977 6.90257 7.54768 7.70267 7.73006 8.26379 8.66723 9.12766 9.99268 10.14468 11.29638 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016827 B = 0.003333 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.585732 B = 8399.321452 C = 9489.564809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.149 3.851 3 H 0.077 0.923 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.053 0.947 7 N -0.733 5.733 8 C -0.332 4.332 9 H 0.064 0.936 10 C -0.043 4.043 11 N -0.942 5.942 12 Si 1.078 2.922 13 H -0.296 1.296 14 H -0.296 1.296 15 H -0.285 1.285 16 C -0.148 4.148 17 C 0.089 3.911 18 N -0.591 5.591 19 C 0.582 3.418 20 O -0.532 6.532 21 C -0.231 4.231 22 C 0.036 3.964 23 O -0.155 6.155 24 C -0.097 4.097 25 C 0.613 3.387 26 N -0.844 5.844 27 O -0.521 6.521 28 C -0.061 4.061 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.366 0.634 35 H 0.254 0.746 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.236 0.764 41 H 0.408 0.592 42 H 0.409 0.591 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 -12.791 11.917 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.095 0.905 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.071 0.929 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.082 0.918 10 C -0.241 4.241 11 N -0.587 5.587 12 Si 0.909 3.091 13 H -0.223 1.223 14 H -0.223 1.223 15 H -0.211 1.211 16 C -0.189 4.189 17 C -0.032 4.032 18 N -0.323 5.323 19 C 0.370 3.630 20 O -0.411 6.411 21 C -0.235 4.235 22 C -0.036 4.036 23 O -0.049 6.049 24 C -0.148 4.148 25 C 0.398 3.602 26 N -0.407 5.407 27 O -0.399 6.399 28 C -0.082 4.082 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.201 0.799 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.252 0.748 41 H 0.237 0.763 42 H 0.241 0.759 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.339 -11.950 11.651 17.021 hybrid contribution -0.769 -0.988 0.328 1.294 sum -4.107 -12.938 11.980 18.105 Atomic orbital electron populations 1.22210 0.92895 1.03473 1.00684 1.21260 0.95126 0.95615 0.83365 0.90519 1.22272 0.97393 1.00497 0.97271 1.20124 0.90253 0.87680 0.95073 0.92927 1.42520 1.14077 1.04728 1.76379 1.20024 0.90437 0.96989 1.38812 0.91766 1.25730 1.06064 0.91530 1.00782 1.70908 1.10927 1.32317 1.44578 0.83264 0.74362 0.75937 0.75551 1.22319 1.22298 1.21094 1.22487 1.01543 0.98058 0.96837 1.22378 0.79587 1.01870 0.99393 1.48021 1.07578 1.56769 1.19965 1.17257 0.85731 0.78594 0.81381 1.90843 1.15782 1.56810 1.77706 1.20868 0.95046 1.05630 1.01963 1.25957 0.98555 0.93519 0.85577 1.83932 1.34108 1.45058 1.41806 1.21765 0.85446 1.04401 1.03234 1.16480 0.84372 0.79570 0.79765 1.43670 1.16540 1.47892 1.32625 1.90945 1.21875 1.53424 1.73618 1.21848 1.00630 0.94197 0.91505 0.90942 0.93818 0.91563 0.90645 0.91806 0.79907 0.93481 0.93009 0.90587 0.89921 0.89536 0.74807 0.76307 0.75894 0.81335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 7.60 37.16 0.28 -1.81 16 2 C 0.15 2.39 3.19 -67.62 -0.22 2.17 16 3 H 0.08 1.36 6.65 -51.93 -0.35 1.02 16 4 C -0.14 -2.15 5.07 -26.63 -0.13 -2.29 16 5 C 0.18 3.24 3.10 -67.89 -0.21 3.03 16 6 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 7 N -0.73 -16.45 4.31 -53.39 -0.23 -16.68 16 8 C -0.33 -8.56 9.93 -15.06 -0.15 -8.71 16 9 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 10 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 11 N -0.94 -27.59 13.70 55.49 0.76 -26.83 16 12 Si 1.08 24.59 29.92 -169.99 -5.09 19.50 16 13 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.30 -6.40 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 16 C -0.15 -2.29 5.78 -26.61 -0.15 -2.44 16 17 C 0.09 1.27 5.25 -3.71 -0.02 1.25 16 18 N -0.59 -8.93 2.97 -166.47 -0.49 -9.43 16 19 C 0.58 9.02 7.53 -12.49 -0.09 8.93 16 20 O -0.53 -9.50 12.49 5.28 0.07 -9.43 16 21 C -0.23 -3.00 5.78 -104.95 -0.61 -3.60 16 22 C 0.04 0.37 9.89 30.58 0.30 0.67 16 23 O -0.15 -1.50 10.32 6.22 0.06 -1.44 16 24 C -0.10 -1.08 7.09 -36.91 -0.26 -1.34 16 25 C 0.61 6.48 8.06 -12.81 -0.10 6.38 16 26 N -0.84 -5.14 8.87 30.28 0.27 -4.87 16 27 O -0.52 -7.33 17.68 5.21 0.09 -7.24 16 28 C -0.06 -0.77 10.51 -39.03 -0.41 -1.18 16 29 H 0.07 1.21 6.71 -51.93 -0.35 0.86 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.07 6.77 -51.93 -0.35 0.72 16 32 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.37 8.58 4.90 -40.82 -0.20 8.38 16 35 H 0.25 7.32 6.77 -40.82 -0.28 7.04 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 0.92 3.27 -51.93 -0.17 0.75 16 39 H 0.09 1.41 7.74 -51.93 -0.40 1.01 16 40 H 0.24 1.89 5.79 -52.49 -0.30 1.58 16 41 H 0.41 1.63 8.57 -40.82 -0.35 1.28 16 42 H 0.41 1.76 8.93 -40.82 -0.36 1.40 16 43 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -33.15 346.64 -6.48 -39.63 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.27 Total: 11.79 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -1.87 Total: -0.24 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.30 Total: -57.81 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.22 Total: -18.10 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.09 Total: 19.50 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.15 -6.48 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.091 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds