Wall clock time and date at job start Fri Apr 10 2020 18:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58307 * 2 1 4 4 C 1.53161 * 109.59248 * 239.56005 * 2 1 3 5 5 C 1.53039 * 109.32791 * 185.56786 * 4 2 1 6 6 H 1.08999 * 109.45758 * 181.38680 * 5 4 2 7 7 N 1.46505 * 109.46218 * 301.36313 * 5 4 2 8 8 C 1.36930 * 119.99795 * 205.02800 * 7 5 4 9 9 H 1.07997 * 120.00404 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99736 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00397 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99890 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47215 * 59.99603 * 12 10 8 14 14 H 1.48506 * 109.47003 * 299.99384 * 12 10 8 15 15 H 1.48500 * 109.47218 * 179.97438 * 12 10 8 16 16 C 1.53039 * 109.52432 * 61.37626 * 5 4 2 17 17 C 1.53194 * 109.31199 * 298.63821 * 16 5 4 18 18 N 1.46924 * 109.58316 * 120.27687 * 2 1 3 19 19 C 1.34774 * 120.63592 * 353.37713 * 18 2 1 20 20 O 1.21601 * 119.99884 * 358.43659 * 19 18 2 21 21 C 1.47487 * 120.00372 * 178.43464 * 19 18 2 22 22 C 1.37809 * 126.77376 * 27.51138 * 21 19 18 23 23 O 1.33497 * 108.34274 * 179.97438 * 22 21 19 24 24 C 1.34874 * 109.88761 * 0.02562 * 23 22 21 25 25 C 1.46780 * 125.65493 * 180.02562 * 24 23 22 26 26 N 1.34779 * 119.99305 * 359.96780 * 25 24 23 27 27 O 1.21675 * 120.00206 * 179.97438 * 25 24 23 28 28 C 1.36062 * 108.69302 * 359.74347 * 24 23 22 29 29 H 1.08995 * 109.47620 * 306.23738 * 1 2 3 30 30 H 1.09000 * 109.47218 * 66.23988 * 1 2 3 31 31 H 1.08998 * 109.46963 * 186.23479 * 1 2 3 32 32 H 1.09009 * 109.47485 * 65.62331 * 4 2 1 33 33 H 1.08994 * 109.50294 * 305.53773 * 4 2 1 34 34 H 0.96998 * 119.99590 * 25.02113 * 7 5 4 35 35 H 0.97003 * 119.99372 * 0.02562 * 11 10 8 36 36 H 1.08992 * 109.50244 * 58.58884 * 16 5 4 37 37 H 1.09003 * 109.50054 * 178.66158 * 16 5 4 38 38 H 1.09003 * 109.58932 * 174.42309 * 17 16 5 39 39 H 1.09001 * 109.58882 * 294.70801 * 17 16 5 40 40 H 1.08001 * 125.82786 * 359.95886 * 22 21 19 41 41 H 0.96989 * 120.00613 * 0.02562 * 26 25 24 42 42 H 0.97003 * 119.99148 * 180.02562 * 26 25 24 43 43 H 1.08000 * 126.68853 * 180.26766 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2440 5 6 3.5675 -0.8494 -1.1689 6 1 3.9376 -1.3476 -2.0650 7 7 4.1570 0.4885 -1.0754 8 6 5.4410 0.7021 -1.5005 9 1 6.0193 -0.1157 -1.9043 10 6 5.9994 1.9699 -1.4124 11 7 5.2946 2.9668 -0.9208 12 14 7.7509 2.2615 -1.9930 13 1 7.8575 1.9219 -3.4346 14 1 8.6800 1.4054 -1.2126 15 1 8.1072 3.6893 -1.7936 16 6 3.9569 -1.6655 0.0657 17 6 3.4650 -0.9451 1.3250 18 7 2.0224 -0.6979 1.1954 19 6 1.1674 -1.1033 2.1551 20 8 -0.0209 -0.8673 2.0499 21 6 1.6727 -1.8332 3.3329 22 6 2.9325 -1.7392 3.8837 23 8 2.9927 -2.5575 4.9367 24 6 1.8111 -3.1881 5.0958 25 6 1.4966 -4.1635 6.1466 26 7 2.4316 -4.4966 7.0585 27 8 0.3920 -4.6715 6.1943 28 6 0.9570 -2.7655 4.1247 29 1 -0.3634 0.6074 0.8288 30 1 -0.3634 0.4141 -0.9406 31 1 -0.3633 -1.0216 0.1116 32 1 1.7658 -0.1695 -2.1361 33 1 1.6030 -1.7270 -1.2887 34 1 3.6377 1.2230 -0.7125 35 1 4.3849 2.8154 -0.6197 36 1 3.4983 -2.6527 0.0089 37 1 5.0412 -1.7698 0.1059 38 1 3.6517 -1.5687 2.1993 39 1 3.9920 0.0029 1.4331 40 1 3.7342 -1.1109 3.5246 41 1 3.3120 -4.0915 7.0206 42 1 2.2238 -5.1415 7.7527 43 1 -0.0663 -3.0806 3.9836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044685684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:47 Heat of formation + Delta-G solvation = -38.184143 kcal Electronic energy + Delta-G solvation = -27725.241453 eV Core-core repulsion = 23772.669549 eV Total energy + Delta-G solvation = -3952.571904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.05408 -41.57036 -40.35612 -38.94725 -36.18330 -35.29265 -34.69559 -33.84087 -33.48708 -31.06605 -30.58747 -28.54948 -25.97893 -25.49170 -25.25869 -24.29552 -22.93226 -22.07737 -21.13726 -20.33214 -19.38207 -18.98727 -18.08724 -17.95975 -17.65167 -17.22414 -16.95604 -16.83821 -16.19497 -15.77895 -15.54413 -15.51737 -15.28604 -15.10277 -14.73657 -14.59602 -14.35478 -14.18396 -13.87117 -13.45275 -13.36902 -13.15181 -12.69626 -12.61670 -12.24814 -12.08741 -11.92183 -11.81646 -11.72802 -11.67986 -11.26846 -11.14038 -10.91010 -10.86635 -10.34612 -9.90116 -9.63903 -9.04479 -8.29692 -5.24369 -0.23198 0.42674 1.35314 1.63281 1.71581 1.73235 1.87644 1.88419 2.11828 2.44643 2.76133 3.25355 3.47084 3.50525 3.62872 3.73014 3.80145 3.90835 3.95520 4.12083 4.22123 4.24180 4.31329 4.39952 4.55115 4.58100 4.60381 4.75817 4.83883 4.87698 4.96291 5.02377 5.17116 5.17573 5.24403 5.33080 5.39574 5.61572 5.70074 5.71533 6.22084 6.34370 6.57347 7.04765 7.05444 7.16281 8.07205 8.19292 9.21503 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016827 B = 0.003333 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.585732 B = 8399.321452 C = 9489.564809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.150 3.850 3 H 0.055 0.945 4 C -0.124 4.124 5 C 0.172 3.828 6 H 0.045 0.955 7 N -0.741 5.741 8 C -0.319 4.319 9 H 0.067 0.933 10 C -0.103 4.103 11 N -0.978 5.978 12 Si 1.122 2.878 13 H -0.284 1.284 14 H -0.275 1.275 15 H -0.300 1.300 16 C -0.140 4.140 17 C 0.095 3.905 18 N -0.590 5.590 19 C 0.581 3.419 20 O -0.562 6.562 21 C -0.253 4.253 22 C 0.061 3.939 23 O -0.137 6.137 24 C -0.089 4.089 25 C 0.612 3.388 26 N -0.817 5.817 27 O -0.562 6.562 28 C -0.079 4.079 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.360 0.640 35 H 0.243 0.757 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.118 0.882 39 H 0.065 0.935 40 H 0.261 0.739 41 H 0.421 0.579 42 H 0.421 0.579 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 -14.557 12.871 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.047 3.953 3 H 0.073 0.927 4 C -0.163 4.163 5 C 0.063 3.937 6 H 0.063 0.937 7 N -0.385 5.385 8 C -0.451 4.451 9 H 0.085 0.915 10 C -0.294 4.294 11 N -0.627 5.627 12 Si 0.949 3.051 13 H -0.211 1.211 14 H -0.201 1.201 15 H -0.226 1.226 16 C -0.181 4.181 17 C -0.027 4.027 18 N -0.322 5.322 19 C 0.371 3.629 20 O -0.443 6.443 21 C -0.258 4.258 22 C -0.012 4.012 23 O -0.030 6.030 24 C -0.140 4.140 25 C 0.397 3.603 26 N -0.381 5.381 27 O -0.443 6.443 28 C -0.100 4.100 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.193 0.807 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.135 0.865 39 H 0.083 0.917 40 H 0.276 0.724 41 H 0.253 0.747 42 H 0.255 0.745 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.742 -13.788 12.636 18.783 hybrid contribution -1.276 -0.512 0.058 1.376 sum -3.018 -14.300 12.694 19.358 Atomic orbital electron populations 1.22048 0.92375 1.02832 1.00704 1.21144 0.95406 0.94713 0.84068 0.92695 1.22153 0.95880 1.01349 0.96947 1.20348 0.91348 0.85908 0.96083 0.93723 1.42651 1.13226 1.06322 1.76254 1.20322 0.91497 0.96687 1.36578 0.91471 1.26945 1.09043 0.91848 1.01579 1.71010 1.10869 1.33399 1.47395 0.82670 0.71231 0.75235 0.75994 1.21084 1.20086 1.22638 1.22350 1.01445 0.98609 0.95695 1.22385 0.78660 1.01327 1.00297 1.48013 1.07967 1.56559 1.19659 1.17563 0.85354 0.78193 0.81783 1.90829 1.17062 1.57939 1.78450 1.20657 0.96473 1.06698 1.01932 1.26235 0.97816 0.92460 0.84672 1.83967 1.33249 1.44472 1.41272 1.21768 0.85352 1.04092 1.02811 1.16461 0.84381 0.79315 0.80170 1.43489 1.16217 1.47034 1.31331 1.90934 1.23683 1.54961 1.74713 1.21837 1.00741 0.94959 0.92451 0.92426 0.92591 0.92110 0.91130 0.89996 0.80695 0.94669 0.90779 0.91014 0.86478 0.91651 0.72429 0.74677 0.74488 0.82364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.80 7.60 71.98 0.55 -3.25 16 2 C 0.15 4.79 3.19 44.96 0.14 4.93 16 3 H 0.06 2.01 6.65 -2.39 -0.02 2.00 16 4 C -0.12 -3.85 5.07 30.66 0.16 -3.70 16 5 C 0.17 6.03 3.10 45.02 0.14 6.17 16 6 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 7 N -0.74 -33.22 4.31 -322.82 -1.39 -34.61 16 8 C -0.32 -16.32 9.93 84.03 0.83 -15.49 16 9 H 0.07 3.35 7.83 -2.91 -0.02 3.33 16 10 C -0.10 -5.59 5.50 84.86 0.47 -5.12 16 11 N -0.98 -58.22 13.70 21.65 0.30 -57.92 16 12 Si 1.12 49.19 29.92 68.60 2.05 51.25 16 13 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 15 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 16 C -0.14 -4.03 5.78 30.67 0.18 -3.86 16 17 C 0.09 2.50 5.25 86.36 0.45 2.95 16 18 N -0.59 -17.32 2.97 -798.85 -2.37 -19.70 16 19 C 0.58 17.63 7.53 86.68 0.65 18.28 16 20 O -0.56 -20.21 12.49 -4.03 -0.05 -20.26 16 21 C -0.25 -6.19 5.78 -20.08 -0.12 -6.31 16 22 C 0.06 1.06 9.89 67.72 0.67 1.73 16 23 O -0.14 -2.20 10.32 -0.67 -0.01 -2.20 16 24 C -0.09 -1.79 7.09 24.00 0.17 -1.62 16 25 C 0.61 11.84 8.06 86.48 0.70 12.54 16 26 N -0.82 -7.66 8.87 -176.32 -1.56 -9.22 16 27 O -0.56 -15.43 17.68 -4.27 -0.08 -15.51 16 28 C -0.08 -1.93 10.51 22.63 0.24 -1.69 16 29 H 0.06 1.96 6.71 -2.39 -0.02 1.94 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.95 6.77 -2.39 -0.02 1.94 16 32 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.36 17.19 4.90 -92.71 -0.45 16.74 16 35 H 0.24 14.41 6.77 -92.71 -0.63 13.78 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.12 2.24 3.27 -2.39 -0.01 2.23 16 39 H 0.07 2.06 7.74 -2.39 -0.02 2.04 16 40 H 0.26 3.18 5.79 -2.91 -0.02 3.16 16 41 H 0.42 1.88 8.57 -92.72 -0.79 1.08 16 42 H 0.42 2.47 8.93 -92.71 -0.83 1.64 16 43 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -72.70 346.64 1.28 -71.42 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -0.84 Total: 31.18 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 5.23 Total: 5.57 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -5.03 Total: -121.45 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.13 Total: -37.97 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.05 Total: 51.25 kcal Total: -72.70 1.28 -71.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.241 kcal (2) G-P(sol) polarization free energy of solvation -72.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds