Wall clock time and date at job start Fri Apr 10 2020 18:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.70442 * 2 1 4 4 C 1.53191 * 109.58635 * 239.62962 * 2 1 3 5 5 C 1.53042 * 109.31272 * 185.56769 * 4 2 1 6 6 H 1.09012 * 109.45821 * 301.36791 * 5 4 2 7 7 N 1.46498 * 109.46214 * 181.40192 * 5 4 2 8 8 C 1.36935 * 120.00202 * 154.97297 * 7 5 4 9 9 H 1.07995 * 119.99991 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99480 * 179.97438 * 8 7 5 11 11 N 1.31612 * 120.00738 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99579 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47104 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47009 * 239.99953 * 12 10 8 15 15 H 1.48499 * 109.47179 * 120.00024 * 12 10 8 16 16 C 1.53037 * 109.52877 * 61.37907 * 5 4 2 17 17 C 1.53190 * 109.31820 * 298.63007 * 16 5 4 18 18 N 1.46926 * 109.58822 * 120.35102 * 2 1 3 19 19 C 1.34778 * 120.62906 * 353.37655 * 18 2 1 20 20 O 1.21682 * 120.00249 * 354.46051 * 19 18 2 21 21 C 1.46779 * 120.00394 * 174.46436 * 19 18 2 22 22 C 1.36055 * 125.65418 * 186.98405 * 21 19 18 23 23 C 1.41742 * 106.62039 * 179.84949 * 22 21 19 24 24 C 1.47489 * 126.77127 * 180.14687 * 23 22 21 25 25 N 1.34776 * 119.99692 * 180.27495 * 24 23 22 26 26 O 1.21597 * 120.00063 * 0.27832 * 24 23 22 27 27 C 1.37809 * 106.45068 * 0.40191 * 23 22 21 28 28 O 1.33495 * 108.34588 * 359.75026 * 27 23 22 29 29 H 1.09005 * 109.47038 * 306.78560 * 1 2 3 30 30 H 1.08999 * 109.46684 * 66.78464 * 1 2 3 31 31 H 1.08996 * 109.47307 * 186.78608 * 1 2 3 32 32 H 1.08996 * 109.48860 * 65.62253 * 4 2 1 33 33 H 1.09001 * 109.50785 * 305.51782 * 4 2 1 34 34 H 0.97007 * 119.99492 * 334.96146 * 7 5 4 35 35 H 0.97004 * 119.99790 * 359.97438 * 11 10 8 36 36 H 1.09003 * 109.49439 * 58.58411 * 16 5 4 37 37 H 1.09005 * 109.49685 * 178.67788 * 16 5 4 38 38 H 1.08996 * 109.59150 * 174.41849 * 17 16 5 39 39 H 1.08998 * 109.58679 * 294.70768 * 17 16 5 40 40 H 1.07999 * 126.69035 * 359.97398 * 22 21 19 41 41 H 0.96999 * 120.00415 * 0.02562 * 25 24 23 42 42 H 0.97005 * 119.99511 * 180.02562 * 25 24 23 43 43 H 1.07997 * 125.82248 * 179.72903 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7297 -1.2452 5 6 3.5675 -0.8481 -1.1700 6 1 4.0060 0.1475 -1.0992 7 7 4.0653 -1.5158 -2.3753 8 6 5.3495 -1.2982 -2.7977 9 1 5.9953 -0.6340 -2.2426 10 6 5.8212 -1.9313 -3.9394 11 7 5.0341 -2.7404 -4.6162 12 14 7.5729 -1.6339 -4.5161 13 1 8.2455 -0.6886 -3.5892 14 1 7.5523 -1.0552 -5.8836 15 1 8.3133 -2.9211 -4.5344 16 6 3.9569 -1.6656 0.0636 17 6 3.4651 -0.9469 1.3239 18 7 2.0226 -0.6994 1.1945 19 6 1.1675 -1.1061 2.1537 20 8 -0.0102 -0.8075 2.0853 21 6 1.6566 -1.9089 3.2808 22 6 0.8814 -2.4909 4.2355 23 6 1.7624 -3.1648 5.1179 24 6 1.3892 -3.9468 6.3115 25 7 2.3455 -4.5298 7.0612 26 8 0.2188 -4.0655 6.6190 27 6 3.0368 -2.9404 4.6439 28 8 2.9498 -2.1874 3.5450 29 1 -0.3633 0.6154 0.8231 30 1 -0.3633 0.4051 -0.9445 31 1 -0.3634 -1.0204 0.1214 32 1 1.7659 -0.1673 -2.1366 33 1 1.6032 -1.7258 -1.2909 34 1 3.4851 -2.1122 -2.8739 35 1 4.1243 -2.8946 -4.3169 36 1 3.4983 -2.6528 0.0054 37 1 5.0412 -1.7695 0.1039 38 1 3.6518 -1.5716 2.1973 39 1 3.9921 0.0009 1.4331 40 1 -0.1955 -2.4492 4.3060 41 1 3.2792 -4.4348 6.8160 42 1 2.1000 -5.0444 7.8460 43 1 3.9499 -3.3103 5.0862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044741058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:00 Heat of formation + Delta-G solvation = -21.614827 kcal Electronic energy + Delta-G solvation = -27294.465118 eV Core-core repulsion = 23342.611713 eV Total energy + Delta-G solvation = -3951.853404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.23593 -40.35069 -39.47945 -37.61463 -34.89169 -34.28945 -33.35979 -32.96348 -32.14624 -30.17510 -29.03976 -27.05620 -24.56082 -24.49086 -23.56145 -23.02905 -21.47087 -21.16760 -20.23770 -19.65701 -18.21493 -17.34863 -17.19070 -17.07573 -16.84972 -16.17794 -16.08818 -15.23565 -14.89798 -14.73857 -14.55118 -14.25487 -13.94516 -13.76908 -13.54435 -13.39444 -13.23190 -13.03952 -12.87738 -12.22769 -12.06884 -11.67496 -11.42279 -10.89964 -10.87742 -10.61173 -10.60364 -10.44940 -10.36699 -10.16862 -10.16236 -10.08846 -9.48860 -9.21285 -9.14037 -8.95680 -8.57716 -7.09989 -6.15271 -3.15967 0.63619 1.25387 2.16466 2.79076 2.87463 3.08074 3.13075 3.47427 3.54065 3.63073 4.05610 4.19303 4.44666 4.60334 4.82519 5.01321 5.09158 5.11652 5.18334 5.24502 5.30594 5.39879 5.52561 5.60191 5.72264 5.80077 5.87562 5.91579 6.02130 6.09743 6.20188 6.28969 6.31461 6.32393 6.36574 6.45524 6.60451 6.75650 6.85222 6.90609 7.29582 7.75711 7.82084 7.95804 8.70402 9.16775 10.03286 10.18304 11.33086 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.002997 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.609975 B = 9340.891279 C =10565.241915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.148 3.852 3 H 0.076 0.924 4 C -0.137 4.137 5 C 0.184 3.816 6 H 0.050 0.950 7 N -0.735 5.735 8 C -0.332 4.332 9 H 0.065 0.935 10 C -0.045 4.045 11 N -0.944 5.944 12 Si 1.085 2.915 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.148 4.148 17 C 0.091 3.909 18 N -0.591 5.591 19 C 0.598 3.402 20 O -0.515 6.515 21 C -0.070 4.070 22 C -0.072 4.072 23 C -0.243 4.243 24 C 0.594 3.406 25 N -0.852 5.852 26 O -0.535 6.535 27 C 0.033 3.967 28 O -0.139 6.139 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.367 0.633 35 H 0.256 0.744 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.170 0.830 41 H 0.400 0.600 42 H 0.407 0.593 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 0.935 21.685 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.046 3.954 3 H 0.094 0.906 4 C -0.176 4.176 5 C 0.073 3.927 6 H 0.068 0.932 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.083 0.917 10 C -0.242 4.242 11 N -0.589 5.589 12 Si 0.916 3.084 13 H -0.221 1.221 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.190 4.190 17 C -0.031 4.031 18 N -0.323 5.323 19 C 0.385 3.615 20 O -0.394 6.394 21 C -0.121 4.121 22 C -0.093 4.093 23 C -0.248 4.248 24 C 0.380 3.620 25 N -0.416 5.416 26 O -0.412 6.412 27 C -0.040 4.040 28 O -0.033 6.033 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.200 0.800 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.187 0.813 41 H 0.228 0.772 42 H 0.239 0.761 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.653 1.037 20.371 20.569 hybrid contribution -0.659 -0.233 1.425 1.587 sum -3.312 0.803 21.795 22.060 Atomic orbital electron populations 1.22210 0.92634 1.03748 1.01094 1.21378 0.95598 0.95248 0.83198 0.90565 1.22331 0.97661 1.00985 0.96592 1.20113 0.90702 0.95056 0.86801 0.93242 1.42446 1.13102 1.54763 1.27365 1.20080 0.89587 1.26336 1.10305 0.91662 1.25768 1.06272 0.97568 0.94641 1.70814 1.08209 1.38397 1.41483 0.83161 0.74189 0.75507 0.75572 1.22113 1.22001 1.22031 1.22651 1.01858 0.99887 0.94570 1.22442 0.78841 1.01226 1.00556 1.48164 1.07941 1.56304 1.19857 1.16772 0.85534 0.78967 0.80242 1.90938 1.15992 1.56662 1.75810 1.22326 0.80640 1.07674 1.01413 1.21805 1.01472 0.94781 0.91282 1.20595 0.93677 1.09147 1.01375 1.17254 0.85242 0.77935 0.81594 1.43658 1.09802 1.56461 1.31632 1.90858 1.18246 1.61008 1.71094 1.25249 0.98971 0.93059 0.86699 1.84238 1.28072 1.53820 1.37164 0.90642 0.93209 0.91571 0.90397 0.91790 0.80013 0.93264 0.92336 0.90443 0.88001 0.91032 0.81264 0.77204 0.76126 0.76720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.61 37.16 0.28 -1.64 16 2 C 0.15 2.08 3.49 -67.60 -0.24 1.84 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.20 4.84 -26.61 -0.13 -2.33 16 5 C 0.18 3.44 2.73 -67.89 -0.19 3.25 16 6 H 0.05 0.95 8.08 -51.92 -0.42 0.54 16 7 N -0.74 -17.66 5.12 -53.38 -0.27 -17.93 16 8 C -0.33 -8.97 9.93 -15.06 -0.15 -9.12 16 9 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 10 C -0.04 -1.27 5.50 -17.43 -0.10 -1.36 16 11 N -0.94 -28.70 13.70 55.49 0.76 -27.94 16 12 Si 1.08 25.36 29.92 -169.99 -5.09 20.27 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 C -0.15 -2.43 5.66 -26.61 -0.15 -2.59 16 17 C 0.09 1.18 6.33 -3.71 -0.02 1.16 16 18 N -0.59 -8.18 2.97 -166.72 -0.50 -8.68 16 19 C 0.60 8.55 7.47 -12.81 -0.10 8.45 16 20 O -0.52 -8.28 12.42 5.20 0.06 -8.22 16 21 C -0.07 -0.86 6.84 -36.92 -0.25 -1.11 16 22 C -0.07 -0.87 10.42 -39.03 -0.41 -1.27 16 23 C -0.24 -2.34 6.16 -104.95 -0.65 -2.99 16 24 C 0.59 5.83 8.09 -12.49 -0.10 5.73 16 25 N -0.85 -4.08 8.86 30.45 0.27 -3.81 16 26 O -0.54 -7.67 17.77 5.28 0.09 -7.58 16 27 C 0.03 0.22 11.64 30.58 0.36 0.58 16 28 O -0.14 -1.37 6.98 6.18 0.04 -1.33 16 29 H 0.07 1.07 6.64 -51.93 -0.34 0.73 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.00 6.85 -51.93 -0.36 0.65 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.37 9.24 6.63 -40.82 -0.27 8.97 16 35 H 0.26 7.68 6.77 -40.82 -0.28 7.40 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.10 1.18 3.71 -55.63 -0.21 0.97 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.17 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.40 0.55 7.78 -40.82 -0.32 0.24 16 42 H 0.41 1.51 8.93 -40.82 -0.36 1.15 16 43 H 0.22 0.32 7.46 -52.49 -0.39 -0.07 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -35.67 351.50 -6.70 -42.36 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.54 Total: 8.94 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.83 Total: -1.38 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.26 Total: -58.36 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.20 Total: -17.13 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.09 Total: 20.27 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.67 -6.70 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044741058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.750 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds