Wall clock time and date at job start Fri Apr 10 2020 18:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34861 * 119.09673 * 2 1 4 4 C 1.41672 * 119.33580 * 180.02562 * 3 2 1 5 5 O 1.22088 * 121.06426 * 180.02562 * 4 3 2 6 6 C 1.47098 * 117.86273 * 0.02562 * 4 3 2 7 7 C 1.47292 * 120.87948 * 179.97438 * 6 4 3 8 8 O 1.21623 * 119.99787 * 48.08674 * 7 6 4 9 9 N 1.34769 * 120.00148 * 228.07816 * 7 6 4 10 10 C 1.46510 * 119.99995 * 355.42607 * 9 7 6 11 11 C 1.46506 * 120.00470 * 175.42254 * 9 7 6 12 12 H 1.09002 * 110.77449 * 3.24224 * 11 9 7 13 13 C 1.54316 * 110.72208 * 126.47882 * 11 9 7 14 14 N 1.47016 * 107.27373 * 140.56089 * 13 11 9 15 15 C 1.36937 * 125.65260 * 181.10099 * 14 13 11 16 16 H 1.07999 * 120.00030 * 359.97172 * 15 14 13 17 17 C 1.38816 * 120.00212 * 179.97438 * 15 14 13 18 18 N 1.31615 * 119.99642 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99908 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47202 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47007 * 119.99835 * 19 17 15 22 22 H 1.48505 * 109.46830 * 239.99476 * 19 17 15 23 23 C 1.47429 * 108.70262 * 1.05564 * 14 13 11 24 24 C 1.54909 * 104.83104 * 335.87586 * 23 14 13 25 25 H 1.08998 * 111.00320 * 278.89724 * 24 23 14 26 26 O 1.42905 * 111.00485 * 155.07975 * 24 23 14 27 27 C 1.37982 * 118.23519 * 0.25291 * 6 4 3 28 28 N 1.34349 * 120.37339 * 359.46296 * 27 6 4 29 29 H 0.96999 * 118.79984 * 180.28631 * 28 27 6 30 30 H 1.08997 * 109.47854 * 89.99792 * 1 2 3 31 31 H 1.09004 * 109.47004 * 209.99775 * 1 2 3 32 32 H 1.09001 * 109.47575 * 329.99842 * 1 2 3 33 33 H 1.08002 * 120.33544 * 359.97438 * 3 2 1 34 34 H 1.09005 * 109.46597 * 275.17746 * 10 9 7 35 35 H 1.09000 * 109.46939 * 35.17644 * 10 9 7 36 36 H 1.08994 * 109.47173 * 155.17951 * 10 9 7 37 37 H 1.09008 * 109.88429 * 21.14007 * 13 11 9 38 38 H 1.09007 * 110.01147 * 260.05102 * 13 11 9 39 39 H 0.97000 * 119.99756 * 179.97438 * 18 17 15 40 40 H 1.08996 * 110.37250 * 217.03684 * 23 14 13 41 41 H 1.09007 * 110.36329 * 94.70950 * 23 14 13 42 42 H 0.96695 * 113.99565 * 61.45348 * 26 24 23 43 43 H 1.08004 * 119.80973 * 179.72990 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1784 0.0000 4 6 3.5795 1.1843 -0.0006 5 8 4.2051 2.2327 -0.0001 6 6 4.2724 -0.1132 -0.0017 7 6 5.7436 -0.1846 -0.0029 8 8 6.3856 0.4883 0.7808 9 7 6.3782 -0.9957 -0.8721 10 6 5.6047 -1.8806 -1.7469 11 6 7.8415 -0.9927 -0.9425 12 1 8.2633 -0.3249 -0.1913 13 6 8.3991 -2.4221 -0.7771 14 7 9.5243 -2.5627 -1.7128 15 6 10.2779 -3.6921 -1.8909 16 1 10.0637 -4.5805 -1.3154 17 6 11.3173 -3.6951 -2.8110 18 7 11.5781 -2.6125 -3.5127 19 14 12.3458 -5.2355 -3.0533 20 1 11.8533 -6.3066 -2.1504 21 1 12.2360 -5.6871 -4.4637 22 1 13.7660 -4.9371 -2.7382 23 6 9.7062 -1.2867 -2.4286 24 6 8.3220 -0.5944 -2.3630 25 1 7.6518 -0.9878 -3.1273 26 8 8.4525 0.8238 -2.4808 27 6 3.5075 -1.2617 -0.0075 28 7 2.1663 -1.1846 -0.0011 29 1 1.6510 -2.0064 -0.0012 30 1 -0.3635 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6135 2.1083 -0.0004 34 1 5.3699 -2.8026 -1.2150 35 1 4.6794 -1.3841 -2.0394 36 1 6.1892 -2.1133 -2.6369 37 1 7.6252 -3.1518 -1.0155 38 1 8.7465 -2.5710 0.2454 39 1 12.3046 -2.6144 -4.1554 40 1 9.9899 -1.4701 -3.4649 41 1 10.4596 -0.6764 -1.9304 42 1 8.8417 1.1148 -3.3167 43 1 3.9899 -2.2280 -0.0129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047585757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:20 Heat of formation + Delta-G solvation = -40.264976 kcal Electronic energy + Delta-G solvation = -27641.852994 eV Core-core repulsion = 23689.190859 eV Total energy + Delta-G solvation = -3952.662135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.25119 -39.53662 -37.95142 -37.39115 -35.11557 -34.74465 -33.58574 -32.04739 -31.33466 -28.98966 -28.08522 -27.23052 -26.61917 -24.59111 -23.91560 -22.48684 -21.23231 -20.45571 -19.32615 -18.23352 -17.88572 -17.07451 -16.87212 -16.49028 -16.05907 -15.72624 -15.42249 -14.82419 -14.68315 -14.49122 -13.90789 -13.78202 -13.59170 -13.42400 -13.33264 -13.06143 -13.02930 -12.90915 -12.77895 -12.36331 -12.31308 -12.00489 -11.70407 -11.39042 -11.20423 -10.95237 -10.85870 -10.16910 -9.94459 -9.88722 -9.68271 -9.67183 -9.34151 -9.14338 -8.73130 -8.30087 -8.19869 -6.93418 -5.72760 -3.16300 0.76091 1.09133 2.36783 2.92386 3.20946 3.35578 3.41147 3.43781 3.68484 3.91125 4.23667 4.39550 4.43062 4.58889 4.75968 4.81474 4.83179 5.06277 5.17441 5.23265 5.29472 5.39847 5.43019 5.51529 5.59665 5.64111 5.65783 5.87098 5.95346 6.07611 6.17990 6.21983 6.43111 6.52624 6.53871 6.63940 6.99224 7.37231 7.51741 7.66788 7.73598 8.05381 8.20257 8.33011 8.51894 9.12136 9.72876 10.35872 11.30837 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024944 B = 0.003039 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.251733 B = 9210.281408 C = 9833.291417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.155 3.845 3 C -0.271 4.271 4 C 0.410 3.590 5 O -0.489 6.489 6 C -0.285 4.285 7 C 0.581 3.419 8 O -0.517 6.517 9 N -0.601 5.601 10 C 0.073 3.927 11 C 0.138 3.862 12 H 0.112 0.888 13 C 0.132 3.868 14 N -0.599 5.599 15 C -0.224 4.224 16 H 0.080 0.920 17 C -0.010 4.010 18 N -0.921 5.921 19 Si 0.917 3.083 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.128 3.872 24 C 0.064 3.936 25 H 0.058 0.942 26 O -0.561 6.561 27 C 0.161 3.839 28 N -0.580 5.580 29 H 0.420 0.580 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.151 0.849 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.031 0.969 38 H 0.032 0.968 39 H 0.253 0.747 40 H 0.112 0.888 41 H 0.025 0.975 42 H 0.374 0.626 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.688 -0.978 2.901 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 C -0.295 4.295 4 C 0.296 3.704 5 O -0.370 6.370 6 C -0.296 4.296 7 C 0.368 3.632 8 O -0.391 6.391 9 N -0.334 5.334 10 C -0.070 4.070 11 C 0.035 3.965 12 H 0.130 0.870 13 C 0.005 3.995 14 N -0.327 5.327 15 C -0.352 4.352 16 H 0.098 0.902 17 C -0.206 4.206 18 N -0.570 5.570 19 Si 0.748 3.252 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.002 3.998 24 C 0.003 3.997 25 H 0.076 0.924 26 O -0.365 6.365 27 C 0.031 3.969 28 N -0.187 5.187 29 H 0.256 0.744 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.169 0.831 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.129 0.871 41 H 0.043 0.957 42 H 0.220 0.780 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -25.088 -0.101 3.821 25.377 hybrid contribution 0.577 -1.340 -0.756 1.643 sum -24.511 -1.441 3.065 24.744 Atomic orbital electron populations 1.21089 0.87948 1.04834 1.04326 1.20261 0.94735 0.85576 0.94627 1.22203 0.96104 0.97355 1.13861 1.18168 0.88366 0.87715 0.76136 1.90826 1.70071 1.33410 1.42712 1.22470 0.94621 0.95280 1.17254 1.17475 0.85874 0.79313 0.80552 1.90799 1.66985 1.42550 1.38782 1.47683 1.06749 1.40649 1.38290 1.21896 0.96651 0.93107 0.95374 1.22138 0.77758 0.98363 0.98284 0.86957 1.21528 0.91097 0.92325 0.94503 1.44288 1.34553 1.10537 1.43312 1.19121 1.08703 0.89379 1.17951 0.90168 1.24817 0.98898 0.97770 0.99102 1.69767 1.32399 1.26518 1.28305 0.85959 0.80030 0.81758 0.77486 1.20487 1.21711 1.21657 1.22595 0.90171 0.85410 1.01640 1.23741 0.99420 0.80957 0.95593 0.92378 1.86494 1.85690 1.21647 1.42702 1.22318 0.82359 1.00234 0.92017 1.40687 1.05875 1.08844 1.63266 0.74374 0.89231 0.90507 0.88801 0.83100 0.92779 0.91607 0.89974 0.95088 0.95018 0.93614 0.87076 0.95661 0.77959 0.80861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.22 10.03 36.00 0.36 0.14 16 2 C 0.16 0.91 6.78 -82.14 -0.56 0.35 16 3 C -0.27 -2.79 9.57 -39.47 -0.38 -3.17 16 4 C 0.41 6.58 6.95 -34.68 -0.24 6.33 16 5 O -0.49 -10.50 17.29 2.52 0.04 -10.46 16 6 C -0.29 -4.09 5.10 -102.72 -0.52 -4.62 16 7 C 0.58 10.90 7.09 -12.58 -0.09 10.81 16 8 O -0.52 -12.25 16.13 2.94 0.05 -12.21 16 9 N -0.60 -10.25 2.89 -173.15 -0.50 -10.75 16 10 C 0.07 0.88 7.57 59.85 0.45 1.33 16 11 C 0.14 2.82 3.08 -66.10 -0.20 2.62 16 12 H 0.11 2.63 7.01 -51.93 -0.36 2.27 16 13 C 0.13 2.81 6.87 -3.07 -0.02 2.78 16 14 N -0.60 -15.18 3.39 -170.07 -0.58 -15.76 16 15 C -0.22 -6.07 10.27 -15.06 -0.15 -6.23 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 18 N -0.92 -26.31 10.09 55.49 0.56 -25.75 16 19 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.13 3.13 5.62 -2.53 -0.01 3.11 16 24 C 0.06 1.32 3.95 -24.58 -0.10 1.22 16 25 H 0.06 1.13 6.46 -51.93 -0.34 0.79 16 26 O -0.56 -11.51 13.47 -35.23 -0.47 -11.98 16 27 C 0.16 1.28 8.96 -16.54 -0.15 1.13 16 28 N -0.58 -2.63 5.16 -9.00 -0.05 -2.67 16 29 H 0.42 0.10 8.70 -40.82 -0.35 -0.26 16 30 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.08 -0.01 8.12 -51.93 -0.42 -0.43 16 32 H 0.09 0.15 8.05 -51.93 -0.42 -0.27 16 33 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.05 0.49 6.97 -51.93 -0.36 0.13 16 35 H 0.07 0.66 6.24 -51.93 -0.32 0.33 16 36 H 0.08 1.09 6.47 -51.93 -0.34 0.75 16 37 H 0.03 0.60 6.84 -51.92 -0.35 0.25 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.11 2.95 5.87 -51.93 -0.30 2.65 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.37 6.02 9.11 45.56 0.42 6.44 16 43 H 0.17 0.92 6.20 -52.48 -0.33 0.59 16 LS Contribution 351.28 15.07 5.29 5.29 Total: -1.00 -41.40 351.28 -7.11 -48.50 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.72 Total: 3.78 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: -1.71 Total: 15.44 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.56 Total: -54.94 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.38 Total: -34.64 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -41.40 -7.11 -48.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047585757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.239 kcal (2) G-P(sol) polarization free energy of solvation -41.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds