Wall clock time and date at job start Fri Apr 10 2020 18:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34861 * 119.09673 * 2 1 4 4 C 1.41672 * 119.33580 * 180.02562 * 3 2 1 5 5 O 1.22088 * 121.06426 * 180.02562 * 4 3 2 6 6 C 1.47098 * 117.86273 * 0.02562 * 4 3 2 7 7 C 1.47292 * 120.87948 * 179.97438 * 6 4 3 8 8 O 1.21623 * 119.99787 * 48.08674 * 7 6 4 9 9 N 1.34769 * 120.00148 * 228.07816 * 7 6 4 10 10 C 1.46510 * 119.99995 * 355.42607 * 9 7 6 11 11 C 1.46506 * 120.00470 * 175.42254 * 9 7 6 12 12 H 1.09002 * 110.77449 * 3.24224 * 11 9 7 13 13 C 1.54316 * 110.72208 * 126.47882 * 11 9 7 14 14 N 1.47016 * 107.27373 * 140.56089 * 13 11 9 15 15 C 1.36937 * 125.65260 * 181.10099 * 14 13 11 16 16 H 1.07999 * 120.00030 * 359.97172 * 15 14 13 17 17 C 1.38816 * 120.00212 * 179.97438 * 15 14 13 18 18 N 1.31615 * 119.99642 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99908 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47202 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47007 * 119.99835 * 19 17 15 22 22 H 1.48505 * 109.46830 * 239.99476 * 19 17 15 23 23 C 1.47429 * 108.70262 * 1.05564 * 14 13 11 24 24 C 1.54909 * 104.83104 * 335.87586 * 23 14 13 25 25 H 1.08998 * 111.00320 * 278.89724 * 24 23 14 26 26 O 1.42905 * 111.00485 * 155.07975 * 24 23 14 27 27 C 1.37982 * 118.23519 * 0.25291 * 6 4 3 28 28 N 1.34349 * 120.37339 * 359.46296 * 27 6 4 29 29 H 0.96999 * 118.79984 * 180.28631 * 28 27 6 30 30 H 1.08997 * 109.47854 * 89.99792 * 1 2 3 31 31 H 1.09004 * 109.47004 * 209.99775 * 1 2 3 32 32 H 1.09001 * 109.47575 * 329.99842 * 1 2 3 33 33 H 1.08002 * 120.33544 * 359.97438 * 3 2 1 34 34 H 1.09005 * 109.46597 * 275.17746 * 10 9 7 35 35 H 1.09000 * 109.46939 * 35.17644 * 10 9 7 36 36 H 1.08994 * 109.47173 * 155.17951 * 10 9 7 37 37 H 1.09008 * 109.88429 * 21.14007 * 13 11 9 38 38 H 1.09007 * 110.01147 * 260.05102 * 13 11 9 39 39 H 0.97000 * 119.99756 * 179.97438 * 18 17 15 40 40 H 1.08996 * 110.37250 * 217.03684 * 23 14 13 41 41 H 1.09007 * 110.36329 * 94.70950 * 23 14 13 42 42 H 0.96695 * 113.99565 * 61.45348 * 26 24 23 43 43 H 1.08004 * 119.80973 * 179.72990 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1784 0.0000 4 6 3.5795 1.1843 -0.0006 5 8 4.2051 2.2327 -0.0001 6 6 4.2724 -0.1132 -0.0017 7 6 5.7436 -0.1846 -0.0029 8 8 6.3856 0.4883 0.7808 9 7 6.3782 -0.9957 -0.8721 10 6 5.6047 -1.8806 -1.7469 11 6 7.8415 -0.9927 -0.9425 12 1 8.2633 -0.3249 -0.1913 13 6 8.3991 -2.4221 -0.7771 14 7 9.5243 -2.5627 -1.7128 15 6 10.2779 -3.6921 -1.8909 16 1 10.0637 -4.5805 -1.3154 17 6 11.3173 -3.6951 -2.8110 18 7 11.5781 -2.6125 -3.5127 19 14 12.3458 -5.2355 -3.0533 20 1 11.8533 -6.3066 -2.1504 21 1 12.2360 -5.6871 -4.4637 22 1 13.7660 -4.9371 -2.7382 23 6 9.7062 -1.2867 -2.4286 24 6 8.3220 -0.5944 -2.3630 25 1 7.6518 -0.9878 -3.1273 26 8 8.4525 0.8238 -2.4808 27 6 3.5075 -1.2617 -0.0075 28 7 2.1663 -1.1846 -0.0011 29 1 1.6510 -2.0064 -0.0012 30 1 -0.3635 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6135 2.1083 -0.0004 34 1 5.3699 -2.8026 -1.2150 35 1 4.6794 -1.3841 -2.0394 36 1 6.1892 -2.1133 -2.6369 37 1 7.6252 -3.1518 -1.0155 38 1 8.7465 -2.5710 0.2454 39 1 12.3046 -2.6144 -4.1554 40 1 9.9899 -1.4701 -3.4649 41 1 10.4596 -0.6764 -1.9304 42 1 8.8417 1.1148 -3.3167 43 1 3.9899 -2.2280 -0.0129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047585757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:20 Heat of formation + Delta-G solvation = -76.178002 kcal Electronic energy + Delta-G solvation = -27643.410300 eV Core-core repulsion = 23689.190859 eV Total energy + Delta-G solvation = -3954.219441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.14044 -40.89596 -39.35997 -38.71840 -36.78169 -36.34565 -34.43157 -33.68218 -32.45171 -30.48964 -29.27374 -28.57988 -27.89962 -26.33674 -24.89914 -23.39834 -22.44545 -22.35039 -20.73446 -19.37148 -19.02813 -18.81934 -18.23942 -17.54621 -17.39623 -17.05780 -16.65895 -16.25415 -15.83793 -15.72873 -15.47774 -15.25674 -14.86693 -14.54134 -14.50062 -14.28430 -13.99283 -13.80118 -13.67967 -13.50865 -13.48684 -13.22628 -13.10781 -13.04437 -12.91663 -12.76074 -12.68500 -11.98995 -11.92517 -11.50390 -11.27937 -10.97647 -10.77754 -10.45445 -10.37450 -9.69238 -9.18813 -8.97526 -7.79989 -5.27460 -0.08161 0.33599 1.49035 1.51099 1.58167 1.61139 1.73949 2.00535 2.48627 2.67305 3.07942 3.32074 3.38510 3.52293 3.65564 3.67368 3.80783 3.97098 4.02023 4.11474 4.19309 4.24160 4.38737 4.45598 4.48200 4.62218 4.78009 4.80567 4.81663 4.85589 4.86866 5.00177 5.23217 5.30096 5.34426 5.45865 5.51906 5.65656 5.70595 6.14266 6.19110 6.38751 6.80243 7.03579 7.05699 7.18167 7.69173 8.32643 9.22399 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024944 B = 0.003039 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.251733 B = 9210.281408 C = 9833.291417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.198 3.802 3 C -0.306 4.306 4 C 0.385 3.615 5 O -0.584 6.584 6 C -0.345 4.345 7 C 0.575 3.425 8 O -0.588 6.588 9 N -0.597 5.597 10 C 0.061 3.939 11 C 0.146 3.854 12 H 0.070 0.930 13 C 0.139 3.861 14 N -0.617 5.617 15 C -0.237 4.237 16 H 0.091 0.909 17 C -0.067 4.067 18 N -0.951 5.951 19 Si 0.986 3.014 20 H -0.262 1.262 21 H -0.288 1.288 22 H -0.298 1.298 23 C 0.138 3.862 24 C 0.080 3.920 25 H 0.082 0.918 26 O -0.577 6.577 27 C 0.222 3.778 28 N -0.545 5.545 29 H 0.452 0.548 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.023 0.977 39 H 0.249 0.751 40 H 0.091 0.909 41 H -0.015 1.015 42 H 0.391 0.609 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.424 -5.366 2.481 30.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 C -0.329 4.329 4 C 0.279 3.721 5 O -0.474 6.474 6 C -0.355 4.355 7 C 0.366 3.634 8 O -0.468 6.468 9 N -0.329 5.329 10 C -0.080 4.080 11 C 0.040 3.960 12 H 0.088 0.912 13 C 0.012 3.988 14 N -0.344 5.344 15 C -0.365 4.365 16 H 0.109 0.891 17 C -0.259 4.259 18 N -0.600 5.600 19 Si 0.814 3.186 20 H -0.186 1.186 21 H -0.215 1.215 22 H -0.226 1.226 23 C 0.011 3.989 24 C 0.019 3.981 25 H 0.099 0.901 26 O -0.384 6.384 27 C 0.087 3.913 28 N -0.153 5.153 29 H 0.295 0.705 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.172 0.828 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.058 0.942 40 H 0.109 0.891 41 H 0.002 0.998 42 H 0.241 0.759 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -29.949 -4.587 3.378 30.486 hybrid contribution 1.858 -0.108 -0.610 1.959 sum -28.091 -4.695 2.769 28.615 Atomic orbital electron populations 1.21307 0.83670 1.06832 1.06199 1.20779 0.96878 0.84235 0.89212 1.22033 0.93407 0.99845 1.17608 1.19005 0.90686 0.87403 0.74983 1.90770 1.71986 1.35998 1.48645 1.21952 0.92363 0.96914 1.24309 1.18209 0.87783 0.78006 0.79439 1.90743 1.68941 1.45306 1.41797 1.47706 1.05226 1.41293 1.38636 1.22326 0.96789 0.94098 0.94764 1.21702 0.80465 0.97104 0.96683 0.91180 1.21583 0.90658 0.93350 0.93162 1.44536 1.35515 1.10175 1.44216 1.19536 1.09021 0.90158 1.17785 0.89093 1.25700 1.00269 1.00750 0.99172 1.69995 1.32737 1.28468 1.28848 0.84898 0.77563 0.78613 0.77527 1.18628 1.21450 1.22590 1.22322 0.91476 0.85341 0.99728 1.23550 0.97351 0.80659 0.96496 0.90080 1.86480 1.85850 1.21684 1.44382 1.22655 0.83188 0.99500 0.85948 1.40965 1.05035 1.10198 1.59053 0.70470 0.87053 0.87016 0.88395 0.82806 0.88262 0.89047 0.90789 0.91615 0.95864 0.94159 0.89080 0.99750 0.75915 0.76628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.36 10.03 71.24 0.71 1.08 16 2 C 0.20 1.36 6.78 41.20 0.28 1.64 16 3 C -0.31 -6.04 9.57 22.34 0.21 -5.82 16 4 C 0.38 13.05 6.95 25.45 0.18 13.23 16 5 O -0.58 -28.07 17.29 -3.39 -0.06 -28.13 16 6 C -0.34 -9.71 5.10 -18.63 -0.10 -9.80 16 7 C 0.58 22.40 7.09 86.63 0.61 23.01 16 8 O -0.59 -30.46 16.13 -1.89 -0.03 -30.49 16 9 N -0.60 -20.14 2.89 -819.96 -2.37 -22.51 16 10 C 0.06 1.24 7.57 127.77 0.97 2.21 16 11 C 0.15 6.16 3.08 46.18 0.14 6.30 16 12 H 0.07 3.57 7.01 -2.39 -0.02 3.56 16 13 C 0.14 5.84 6.87 86.73 0.60 6.43 16 14 N -0.62 -31.68 3.39 -691.98 -2.35 -34.03 16 15 C -0.24 -12.83 10.27 84.03 0.86 -11.97 16 16 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 17 C -0.07 -3.67 5.49 84.86 0.47 -3.21 16 18 N -0.95 -55.77 10.09 21.65 0.22 -55.55 16 19 Si 0.99 44.31 29.55 68.60 2.03 46.33 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 21 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 23 C 0.14 7.06 5.62 86.85 0.49 7.54 16 24 C 0.08 3.42 3.95 31.99 0.13 3.55 16 25 H 0.08 3.11 6.46 -2.39 -0.02 3.09 16 26 O -0.58 -24.97 13.47 -148.98 -2.01 -26.98 16 27 C 0.22 2.42 8.96 84.25 0.76 3.18 16 28 N -0.55 -1.32 5.16 -182.39 -0.94 -2.26 16 29 H 0.45 -3.82 8.70 -92.71 -0.81 -4.63 16 30 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.11 -0.96 8.12 -2.38 -0.02 -0.98 16 32 H 0.10 -0.19 8.05 -2.39 -0.02 -0.21 16 33 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 34 H 0.10 1.14 6.97 -2.38 -0.02 1.13 16 35 H 0.09 1.41 6.24 -2.39 -0.01 1.39 16 36 H 0.07 1.69 6.47 -2.39 -0.02 1.68 16 37 H 0.07 2.34 6.84 -2.38 -0.02 2.32 16 38 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.09 5.05 5.87 -2.39 -0.01 5.04 16 41 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 42 H 0.39 13.30 9.11 -74.06 -0.67 12.63 16 43 H 0.22 0.65 6.20 -2.91 -0.02 0.63 16 Total: -1.00 -106.06 351.28 0.40 -105.66 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -0.40 Total: 10.59 kcal Atomic # 6 Polarization: 31.05 SS G_CDS: 6.31 Total: 37.36 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -5.44 Total: -114.35 kcal Atomic # 8 Polarization: -83.50 SS G_CDS: -2.10 Total: -85.60 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -106.06 0.40 -105.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047585757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.482 kcal (2) G-P(sol) polarization free energy of solvation -106.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds