Wall clock time and date at job start Fri Apr 10 2020 18:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36010 * 116.99998 * 2 1 4 4 C 1.35863 * 120.31416 * 0.27291 * 3 2 1 5 5 N 1.35437 * 120.77315 * 180.28374 * 4 3 2 6 6 H 0.97004 * 119.29282 * 179.72235 * 5 4 3 7 7 C 1.36428 * 121.41174 * 359.43323 * 5 4 3 8 8 C 1.48070 * 119.72254 * 180.26167 * 7 5 4 9 9 O 1.21514 * 120.00322 * 172.75189 * 8 7 5 10 10 N 1.34785 * 119.99372 * 352.75076 * 8 7 5 11 11 C 1.47425 * 125.64356 * 184.54225 * 10 8 7 12 12 C 1.55124 * 104.72317 * 155.82044 * 11 10 8 13 13 H 1.09009 * 111.22161 * 279.17380 * 12 11 10 14 14 C 1.53004 * 110.90970 * 155.27312 * 12 11 10 15 15 C 1.55153 * 101.48907 * 37.29037 * 12 11 10 16 16 H 1.09003 * 110.72586 * 205.97351 * 15 12 11 17 17 N 1.46505 * 110.72039 * 82.69665 * 15 12 11 18 18 C 1.36935 * 119.99811 * 160.02570 * 17 15 12 19 19 H 1.07994 * 120.00530 * 0.02562 * 18 17 15 20 20 C 1.38819 * 119.99457 * 180.02562 * 18 17 15 21 21 N 1.31612 * 119.99584 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00233 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47062 * 89.99655 * 22 20 18 24 24 H 1.48495 * 109.47023 * 210.00057 * 22 20 18 25 25 H 1.48507 * 109.47057 * 330.00086 * 22 20 18 26 26 C 1.47022 * 125.65139 * 4.84763 * 10 8 7 27 27 C 1.36180 * 120.56348 * 0.28189 * 7 5 4 28 28 C 1.41569 * 120.31247 * 180.02562 * 3 2 1 29 29 O 1.22263 * 120.65419 * 0.02562 * 28 3 2 30 30 H 1.08997 * 109.47255 * 59.99779 * 1 2 3 31 31 H 1.08998 * 109.47259 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46822 * 300.00371 * 1 2 3 33 33 H 1.07995 * 119.61048 * 0.02562 * 4 3 2 34 34 H 1.09008 * 110.36570 * 274.74660 * 11 10 8 35 35 H 1.08999 * 110.37091 * 37.06387 * 11 10 8 36 36 H 1.08995 * 109.46893 * 307.97599 * 14 12 11 37 37 H 1.08996 * 109.46897 * 67.97516 * 14 12 11 38 38 H 1.09000 * 109.46762 * 187.97395 * 14 12 11 39 39 H 0.96998 * 119.99571 * 340.02672 * 17 15 12 40 40 H 0.97007 * 120.00200 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.87977 * 300.44359 * 26 10 8 42 42 H 1.08997 * 109.87580 * 61.45193 * 26 10 8 43 43 H 1.07999 * 120.40967 * 180.02562 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3553 0.0056 5 7 1.9180 3.5670 -0.0001 6 1 1.3732 4.3696 -0.0001 7 6 3.2773 3.6829 -0.0001 8 6 3.8996 5.0265 -0.0006 9 8 5.1022 5.1392 0.1322 10 7 3.1319 6.1245 -0.1483 11 6 3.6256 7.5090 -0.2615 12 6 2.5004 8.2687 -1.0118 13 1 2.5593 8.0997 -2.0871 14 6 2.5437 9.7642 -0.6915 15 6 1.2300 7.6085 -0.4140 16 1 0.3960 7.6738 -1.1128 17 7 0.8818 8.2227 0.8697 18 6 -0.3879 8.0970 1.3668 19 1 -1.1326 7.5447 0.8130 20 6 -0.7179 8.6795 2.5829 21 7 -1.9381 8.5582 3.0610 22 14 0.5698 9.6354 3.5407 23 1 0.5342 11.0621 3.1301 24 1 0.2840 9.5313 4.9942 25 1 1.9150 9.0728 3.2591 26 6 1.6634 6.1405 -0.2170 27 6 4.0669 2.5733 -0.0001 28 6 3.4598 1.2937 -0.0005 29 8 4.1429 0.2797 -0.0015 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2344 2.2974 0.0105 34 1 3.7816 7.9382 0.7283 35 1 4.5506 7.5361 -0.8376 36 1 2.5530 9.9041 0.3894 37 1 3.4441 10.2021 -1.1223 38 1 1.6648 10.2517 -1.1135 39 1 1.5507 8.7185 1.3674 40 1 -2.1689 8.9656 3.9106 41 1 1.3252 5.5377 -1.0598 42 1 1.2448 5.7491 0.7101 43 1 5.1427 2.6679 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054909941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:35 Heat of formation + Delta-G solvation = -20.941857 kcal Electronic energy + Delta-G solvation = -27668.724326 eV Core-core repulsion = 23716.900104 eV Total energy + Delta-G solvation = -3951.824222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67777 -40.13911 -38.44124 -37.93860 -37.65309 -34.47010 -32.89895 -31.67857 -31.26904 -30.64481 -28.68001 -27.87854 -26.75317 -24.75429 -23.62957 -23.20285 -22.20577 -20.91581 -19.83809 -18.81705 -18.31639 -17.96288 -17.23690 -16.41092 -16.22981 -16.15093 -16.00830 -15.30867 -14.92730 -14.67089 -14.52424 -14.40608 -14.16453 -13.91968 -13.63235 -13.33386 -13.15794 -12.94291 -12.84114 -12.55040 -12.42469 -12.13231 -11.75231 -11.69297 -11.56054 -11.29340 -11.08018 -10.85293 -10.58510 -10.43529 -10.26563 -9.85346 -9.57421 -9.54343 -9.30442 -8.84588 -7.74764 -7.65561 -6.07240 -3.46876 0.57913 1.09546 2.43138 2.65934 2.74781 3.11624 3.16626 3.18920 3.27582 3.63961 3.97104 4.31324 4.32279 4.49856 4.57655 4.61938 4.75411 4.84715 4.94582 4.95140 4.96839 5.19149 5.27995 5.28839 5.32666 5.39855 5.52254 5.57070 5.64831 5.70150 5.83395 5.88371 5.99223 6.04959 6.06961 6.26509 6.42376 6.51149 6.61428 7.06621 7.19854 7.63745 7.75491 7.97384 8.10789 8.86356 9.59103 9.75724 11.09613 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.003965 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.603341 B = 7060.092733 C = 8298.271317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.289 6.289 3 C -0.038 4.038 4 C 0.030 3.970 5 N -0.570 5.570 6 H 0.429 0.571 7 C 0.132 3.868 8 C 0.570 3.430 9 O -0.513 6.513 10 N -0.604 5.604 11 C 0.113 3.887 12 C -0.115 4.115 13 H 0.089 0.911 14 C -0.134 4.134 15 C 0.184 3.816 16 H 0.087 0.913 17 N -0.734 5.734 18 C -0.264 4.264 19 H 0.094 0.906 20 C 0.017 3.983 21 N -0.923 5.923 22 Si 0.879 3.121 23 H -0.280 1.280 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.040 3.960 27 C -0.219 4.219 28 C 0.401 3.599 29 O -0.505 6.505 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.171 0.829 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.366 0.634 40 H 0.263 0.737 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.910 -5.529 -9.647 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.201 6.201 3 C -0.089 4.089 4 C -0.098 4.098 5 N -0.194 5.194 6 H 0.280 0.720 7 C 0.018 3.982 8 C 0.356 3.644 9 O -0.388 6.388 10 N -0.337 5.337 11 C -0.009 4.009 12 C -0.135 4.135 13 H 0.108 0.892 14 C -0.192 4.192 15 C 0.071 3.929 16 H 0.105 0.895 17 N -0.376 5.376 18 C -0.394 4.394 19 H 0.111 0.889 20 C -0.180 4.180 21 N -0.568 5.568 22 Si 0.708 3.292 23 H -0.206 1.206 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.086 4.086 27 C -0.247 4.247 28 C 0.292 3.708 29 O -0.389 6.389 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.188 0.812 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.201 0.799 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.727 -6.289 -9.486 12.324 hybrid contribution -0.015 1.103 0.980 1.476 sum 4.712 -5.186 -8.505 11.020 Atomic orbital electron populations 1.23145 0.79110 1.04426 1.01166 1.86255 1.20360 1.24348 1.89157 1.20428 0.94795 0.84685 1.08970 1.21791 0.99067 0.84467 1.04450 1.42363 1.05644 1.09900 1.61538 0.71951 1.20313 0.83304 0.95284 0.99288 1.17589 0.86288 0.82275 0.78211 1.90833 1.13262 1.85452 1.49214 1.48448 1.07810 1.06874 1.70602 1.22455 0.97726 0.79660 1.01035 1.22725 0.94879 0.96106 0.99827 0.89230 1.21578 1.01798 0.93488 1.02312 1.21117 0.94983 0.87294 0.89466 0.89547 1.42838 1.11279 1.63279 1.20218 1.18998 0.86658 1.30587 1.03112 0.88869 1.24665 0.96011 0.99867 0.97479 1.69677 1.17850 1.48259 1.21047 0.86667 0.81509 0.80732 0.80256 1.20614 1.21442 1.20316 1.23654 0.79304 1.04483 1.01172 1.22415 1.02080 0.90391 1.09809 1.16737 0.86103 0.89707 0.78261 1.90839 1.65727 1.37508 1.44861 0.92698 0.87960 0.92552 0.81227 0.90826 0.90179 0.92173 0.92859 0.91341 0.79911 0.92649 0.91273 0.89190 0.81593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.29 -3.86 10.33 -35.60 -0.37 -4.23 16 3 C -0.04 -0.51 6.71 -39.16 -0.26 -0.78 16 4 C 0.03 0.32 10.22 -16.81 -0.17 0.14 16 5 N -0.57 -6.29 4.96 -9.58 -0.05 -6.34 16 6 H 0.43 4.29 3.14 -40.95 -0.13 4.16 16 7 C 0.13 1.75 6.72 -82.53 -0.55 1.20 16 8 C 0.57 8.28 7.82 -12.22 -0.10 8.19 16 9 O -0.51 -8.80 16.59 5.35 0.09 -8.71 16 10 N -0.60 -7.94 3.33 -171.51 -0.57 -8.51 16 11 C 0.11 1.42 6.34 -2.41 -0.02 1.40 16 12 C -0.12 -1.31 3.53 -88.35 -0.31 -1.62 16 13 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 14 C -0.13 -1.55 8.85 37.16 0.33 -1.22 16 15 C 0.18 2.54 3.36 -66.09 -0.22 2.32 16 16 H 0.09 1.15 8.12 -51.93 -0.42 0.73 16 17 N -0.73 -13.67 4.42 -51.65 -0.23 -13.90 16 18 C -0.26 -6.18 10.46 -15.06 -0.16 -6.34 16 19 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 20 C 0.02 0.45 5.50 -17.43 -0.10 0.35 16 21 N -0.92 -25.98 13.97 55.49 0.78 -25.21 16 22 Si 0.88 19.79 27.74 -169.99 -4.71 15.07 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -5.89 6.52 56.52 0.37 -5.52 16 26 C 0.04 0.49 4.77 -3.06 -0.01 0.48 16 27 C -0.22 -3.22 9.53 -39.03 -0.37 -3.59 16 28 C 0.40 6.55 6.78 -37.02 -0.25 6.30 16 29 O -0.50 -10.02 17.71 -11.15 -0.20 -10.22 16 30 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 33 H 0.17 1.18 6.21 -52.49 -0.33 0.85 16 34 H 0.07 1.01 7.99 -51.92 -0.41 0.60 16 35 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.06 0.81 6.37 -51.93 -0.33 0.47 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.37 6.98 3.96 -40.82 -0.16 6.82 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.07 0.65 6.97 -51.93 -0.36 0.29 16 42 H 0.09 1.23 6.93 -51.93 -0.36 0.87 16 43 H 0.17 2.44 7.59 -52.49 -0.40 2.04 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -32.90 349.79 -6.60 -39.49 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.40 Total: 9.33 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -1.20 Total: 7.95 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.07 Total: -53.96 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.48 Total: -23.16 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.71 Total: 15.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.90 -6.60 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054909941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.551 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds