Wall clock time and date at job start Fri Apr 10 2020 18:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36013 * 117.00279 * 2 1 4 4 C 1.35852 * 120.31184 * 0.02595 * 3 2 1 5 5 N 1.35450 * 120.77454 * 179.72056 * 4 3 2 6 6 H 0.96996 * 119.29366 * 180.27096 * 5 4 3 7 7 C 1.36429 * 121.40704 * 0.52180 * 5 4 3 8 8 C 1.48073 * 119.71345 * 179.75624 * 7 5 4 9 9 O 1.21516 * 119.99297 * 200.59717 * 8 7 5 10 10 N 1.34776 * 120.00086 * 20.59838 * 8 7 5 11 11 C 1.47423 * 125.64951 * 357.22042 * 10 8 7 12 12 C 1.54914 * 104.83297 * 155.91838 * 11 10 8 13 13 H 1.08995 * 111.00077 * 278.93641 * 12 11 10 14 14 N 1.46494 * 111.00318 * 155.08292 * 12 11 10 15 15 C 1.36936 * 120.00207 * 92.80631 * 14 12 11 16 16 H 1.07994 * 119.99791 * 359.97438 * 15 14 12 17 17 C 1.38812 * 119.99961 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00388 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99587 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46932 * 60.00846 * 19 17 15 21 21 H 1.48500 * 109.46748 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47300 * 300.00177 * 19 17 15 23 23 C 1.55158 * 101.57773 * 37.00822 * 12 11 10 24 24 H 1.08998 * 110.72072 * 82.86732 * 23 12 11 25 25 C 1.53005 * 110.71949 * 206.13405 * 23 12 11 26 26 C 1.47022 * 125.64731 * 177.27489 * 10 8 7 27 27 C 1.36178 * 120.56510 * 359.46991 * 7 5 4 28 28 C 1.41572 * 120.31252 * 179.97438 * 3 2 1 29 29 O 1.22265 * 120.65990 * 0.02562 * 28 3 2 30 30 H 1.09005 * 109.47248 * 300.00340 * 1 2 3 31 31 H 1.08998 * 109.47032 * 60.00035 * 1 2 3 32 32 H 1.09000 * 109.47756 * 179.97438 * 1 2 3 33 33 H 1.07999 * 119.61116 * 359.97162 * 4 3 2 34 34 H 1.08998 * 110.36525 * 37.07810 * 11 10 8 35 35 H 1.09003 * 110.45892 * 274.80416 * 11 10 8 36 36 H 0.97008 * 119.99872 * 272.79903 * 14 12 11 37 37 H 0.96999 * 120.00651 * 179.97438 * 18 17 15 38 38 H 1.09006 * 109.46542 * 59.99854 * 25 23 12 39 39 H 1.08991 * 109.47432 * 180.02562 * 25 23 12 40 40 H 1.08998 * 109.47093 * 300.00493 * 25 23 12 41 41 H 1.09000 * 109.88418 * 61.59046 * 26 10 8 42 42 H 1.09004 * 109.87926 * 300.43036 * 26 10 8 43 43 H 1.07993 * 120.40486 * 180.23389 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3552 0.0005 5 7 1.9180 3.5670 0.0062 6 1 1.3733 4.3695 0.0105 7 6 3.2774 3.6828 0.0010 8 6 3.8996 5.0265 0.0020 9 8 5.0472 5.1648 -0.3726 10 7 3.1930 6.0960 0.4184 11 6 1.7810 6.0809 0.8420 12 6 1.6321 7.3128 1.7695 13 1 1.9911 7.0908 2.7744 14 7 0.2445 7.7813 1.8014 15 6 -0.6100 7.3258 2.7696 16 1 -0.2610 6.6208 3.5095 17 6 -1.9247 7.7702 2.8001 18 7 -2.3502 8.6291 1.8981 19 14 -3.0905 7.1482 4.1206 20 1 -2.5590 7.5083 5.4596 21 1 -4.4262 7.7696 3.9343 22 1 -3.2131 5.6719 4.0172 23 6 2.5518 8.3454 1.0658 24 1 2.0244 8.8380 0.2490 25 6 3.0790 9.3730 2.0694 26 6 3.7023 7.4711 0.5243 27 6 4.0669 2.5732 0.0006 28 6 3.4598 1.2936 0.0005 29 8 4.1430 0.2796 0.0006 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2344 2.2973 0.0005 34 1 1.5589 5.1649 1.3894 35 1 1.1230 6.1748 -0.0219 36 1 -0.0691 8.4144 1.1366 37 1 -3.2690 8.9394 1.9191 38 1 3.6507 8.8632 2.8449 39 1 3.7212 10.0874 1.5544 40 1 2.2404 9.9005 2.5237 41 1 4.0094 7.8293 -0.4583 42 1 4.5468 7.5015 1.2128 43 1 5.1427 2.6679 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054909944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:43 Heat of formation + Delta-G solvation = -35.730748 kcal Electronic energy + Delta-G solvation = -27422.058434 eV Core-core repulsion = 23469.592917 eV Total energy + Delta-G solvation = -3952.465517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63898 -40.06876 -38.34246 -37.84255 -37.64884 -34.43305 -32.92221 -31.68387 -31.14200 -30.63220 -28.02240 -27.85841 -26.71865 -24.70026 -23.79226 -23.22115 -21.77490 -20.94626 -20.12713 -18.90152 -18.14676 -17.54123 -17.22933 -16.53013 -16.26120 -16.08336 -15.98086 -15.19769 -14.97383 -14.53920 -14.46201 -14.22048 -14.01405 -13.84892 -13.43624 -13.32974 -13.20512 -13.04223 -12.93492 -12.81602 -12.16413 -11.93435 -11.68059 -11.55684 -11.33818 -11.23891 -10.95431 -10.85290 -10.50442 -10.45069 -10.24047 -9.97863 -9.58147 -9.53724 -9.27263 -8.81133 -7.75020 -7.36759 -6.08509 -3.41549 0.60088 1.09328 2.41861 2.54220 2.81857 3.11914 3.23167 3.29727 3.30959 3.62703 3.97786 4.31006 4.34933 4.54069 4.69244 4.71868 4.85850 4.94027 4.96013 4.97652 5.21491 5.29701 5.31400 5.36466 5.39419 5.46038 5.59042 5.64651 5.75451 5.85926 5.89277 5.97632 6.03697 6.13704 6.15996 6.40175 6.50471 6.55609 6.60469 7.06660 7.21402 7.40602 7.75897 7.96915 8.07868 9.20742 9.70798 10.05791 11.12446 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010194 B = 0.004313 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.069685 B = 6489.827465 C = 8884.509003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.289 6.289 3 C -0.037 4.037 4 C 0.031 3.969 5 N -0.565 5.565 6 H 0.429 0.571 7 C 0.134 3.866 8 C 0.568 3.432 9 O -0.514 6.514 10 N -0.606 5.606 11 C 0.040 3.960 12 C 0.183 3.817 13 H 0.075 0.925 14 N -0.707 5.707 15 C -0.260 4.260 16 H 0.073 0.927 17 C -0.001 4.001 18 N -0.925 5.925 19 Si 0.908 3.092 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.284 1.284 23 C -0.115 4.115 24 H 0.087 0.913 25 C -0.135 4.135 26 C 0.116 3.884 27 C -0.221 4.221 28 C 0.402 3.598 29 O -0.504 6.504 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.171 0.829 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.389 0.611 37 H 0.260 0.740 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 -5.276 -3.935 8.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.201 6.201 3 C -0.088 4.088 4 C -0.097 4.097 5 N -0.185 5.185 6 H 0.276 0.724 7 C 0.020 3.980 8 C 0.354 3.646 9 O -0.389 6.389 10 N -0.339 5.339 11 C -0.087 4.087 12 C 0.069 3.931 13 H 0.093 0.907 14 N -0.346 5.346 15 C -0.391 4.391 16 H 0.091 0.909 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.738 3.262 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.211 1.211 23 C -0.135 4.135 24 H 0.106 0.894 25 C -0.193 4.193 26 C -0.007 4.007 27 C -0.248 4.248 28 C 0.292 3.708 29 O -0.389 6.389 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.188 0.812 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.223 0.777 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.042 -6.040 -4.008 9.437 hybrid contribution -1.675 0.376 0.433 1.770 sum 4.367 -5.664 -3.576 7.997 Atomic orbital electron populations 1.23148 0.79071 1.04437 1.01213 1.86253 1.20387 1.24318 1.89141 1.20417 0.94781 0.84677 1.08900 1.21787 0.99096 0.84326 1.04480 1.41898 1.05442 1.09535 1.61671 0.72407 1.20309 0.83191 0.95352 0.99125 1.17608 0.85718 0.82309 0.78965 1.90837 1.16527 1.84367 1.47189 1.48508 1.13475 1.08284 1.63676 1.24004 0.79926 1.04308 1.00415 1.21319 0.86810 0.89169 0.95797 0.90721 1.42317 1.04716 1.52301 1.35223 1.19181 0.91215 1.22085 1.06604 0.90930 1.24774 0.97384 0.99026 0.98664 1.69633 1.17069 1.34435 1.35991 0.86278 0.80310 0.78218 0.81389 1.20954 1.21500 1.21098 1.22562 0.95389 0.96284 0.99221 0.89442 1.21664 1.01298 0.98129 0.98165 1.22130 0.97353 0.79657 1.01517 1.22382 1.01968 0.90386 1.10096 1.16735 0.86090 0.89711 0.78226 1.90840 1.65714 1.37519 1.44812 0.92498 0.92700 0.87952 0.81183 0.90360 0.90268 0.77670 0.93026 0.92734 0.92956 0.91131 0.91148 0.90824 0.81671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.29 -3.90 10.33 -35.60 -0.37 -4.27 16 3 C -0.04 -0.50 6.71 -39.17 -0.26 -0.76 16 4 C 0.03 0.33 10.22 -16.81 -0.17 0.16 16 5 N -0.57 -6.22 4.36 -9.57 -0.04 -6.26 16 6 H 0.43 4.32 4.47 -40.82 -0.18 4.14 16 7 C 0.13 1.74 6.55 -82.53 -0.54 1.20 16 8 C 0.57 7.99 7.75 -12.23 -0.09 7.90 16 9 O -0.51 -8.55 16.79 5.35 0.09 -8.46 16 10 N -0.61 -7.78 3.33 -171.55 -0.57 -8.35 16 11 C 0.04 0.52 4.76 -2.53 -0.01 0.50 16 12 C 0.18 2.78 3.16 -65.78 -0.21 2.57 16 13 H 0.07 1.20 8.00 -51.93 -0.42 0.78 16 14 N -0.71 -14.10 5.24 -51.35 -0.27 -14.37 16 15 C -0.26 -6.04 9.96 -15.06 -0.15 -6.19 16 16 H 0.07 1.64 7.83 -52.49 -0.41 1.23 16 17 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 18 N -0.93 -24.47 13.06 55.49 0.72 -23.74 16 19 Si 0.91 19.80 29.55 -169.99 -5.02 14.77 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 C -0.11 -1.45 3.19 -88.79 -0.28 -1.74 16 24 H 0.09 1.14 8.00 -51.93 -0.42 0.72 16 25 C -0.13 -1.60 9.16 37.16 0.34 -1.26 16 26 C 0.12 1.39 6.47 -3.07 -0.02 1.37 16 27 C -0.22 -3.19 9.52 -39.03 -0.37 -3.56 16 28 C 0.40 6.52 6.78 -37.02 -0.25 6.27 16 29 O -0.50 -9.97 17.71 -11.15 -0.20 -10.17 16 30 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.17 1.26 6.21 -52.49 -0.33 0.93 16 34 H 0.08 0.98 6.19 -51.93 -0.32 0.66 16 35 H 0.08 1.00 7.59 -51.93 -0.39 0.61 16 36 H 0.39 8.40 7.76 -40.82 -0.32 8.08 16 37 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 38 H 0.05 0.61 8.06 -51.93 -0.42 0.20 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.87 7.77 -51.93 -0.40 0.46 16 43 H 0.17 2.37 7.72 -52.49 -0.41 1.96 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -31.04 357.04 -7.04 -38.08 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.63 Total: 9.92 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -1.13 Total: 7.47 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.16 Total: -52.73 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.48 Total: -22.89 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.04 -7.04 -38.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054909944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.345 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds